Wall clock time and date at job start Tue Mar 31 2020 18:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21275 * 120.00321 * 2 1 4 4 N 1.34775 * 119.99577 * 180.02562 * 2 1 3 5 5 C 1.39299 * 119.99691 * 184.00915 * 4 2 1 6 6 C 1.38775 * 120.15109 * 325.34733 * 5 4 2 7 7 C 1.38097 * 120.13883 * 179.97438 * 6 5 4 8 8 C 1.38431 * 120.45468 * 0.02661 * 7 6 5 9 9 C 1.38147 * 120.29601 * 359.97438 * 8 7 6 10 10 F 1.35101 * 120.07269 * 180.02562 * 9 8 7 11 11 C 1.39942 * 119.84919 * 359.72445 * 9 8 7 12 12 C 1.47381 * 120.21867 * 180.27807 * 11 9 8 13 13 O 1.21602 * 119.99910 * 270.24743 * 12 11 9 14 14 N 1.34778 * 119.99656 * 90.25158 * 12 11 9 15 15 C 1.46505 * 119.99703 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46924 * 179.97438 * 15 14 12 17 17 H 1.08996 * 112.96760 * 306.68282 * 16 15 14 18 18 C 1.53945 * 113.76739 * 174.99837 * 16 15 14 19 19 C 1.53937 * 86.29079 * 222.09543 * 18 16 15 20 20 N 1.47575 * 86.12138 * 23.60909 * 19 18 16 21 21 C 1.36934 * 134.49926 * 155.36206 * 20 19 18 22 22 H 1.08004 * 120.00473 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99874 * 359.97438 * 21 20 19 24 24 N 1.31621 * 119.99871 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00196 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47321 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47324 * 120.00447 * 25 23 21 28 28 H 1.48502 * 109.47242 * 240.00375 * 25 23 21 29 29 H 1.09002 * 109.47005 * 239.99673 * 1 2 3 30 30 H 1.08995 * 109.46903 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47470 * 119.99691 * 1 2 3 32 32 H 0.97000 * 120.00483 * 4.29230 * 4 2 1 33 33 H 1.07999 * 119.93131 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.77281 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.84955 * 180.02562 * 8 7 6 36 36 H 0.96999 * 120.00309 * 0.02562 * 14 12 11 37 37 H 1.08998 * 109.47236 * 299.99830 * 15 14 12 38 38 H 1.08998 * 109.46981 * 59.99800 * 15 14 12 39 39 H 1.09008 * 113.74000 * 336.44035 * 18 16 15 40 40 H 1.08996 * 113.74115 * 107.64272 * 18 16 15 41 41 H 1.09008 * 113.77341 * 137.91160 * 19 18 16 42 42 H 1.08999 * 113.76954 * 269.19528 * 19 18 16 43 43 H 0.97003 * 119.99932 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5713 -1.1688 0.0838 6 6 4.3073 -0.1589 -0.5197 7 6 5.6857 -0.1604 -0.4354 8 6 6.3458 -1.1663 0.2492 9 6 5.6313 -2.1806 0.8568 10 9 6.2800 -3.1599 1.5242 11 6 4.2337 -2.1880 0.7847 12 6 3.4631 -3.2628 1.4351 13 8 3.1977 -4.2781 0.8207 14 7 3.0525 -3.1204 2.7109 15 6 2.2860 -4.1885 3.3573 16 6 1.9480 -3.7774 4.7917 17 1 2.8246 -3.4781 5.3661 18 6 1.0371 -4.7782 5.5257 19 6 0.2880 -3.5468 6.0661 20 7 0.8188 -2.8321 4.8891 21 6 0.4229 -1.7332 4.1744 22 1 1.0039 -1.4025 3.3262 23 6 -0.7259 -1.0448 4.5395 24 7 -1.4343 -1.4480 5.5730 25 14 -1.2665 0.4538 3.5642 26 1 -0.3061 0.6974 2.4581 27 1 -2.6198 0.2160 3.0008 28 1 -1.3037 1.6391 4.4580 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6979 -2.0061 -0.0638 33 1 3.8011 0.6299 -1.0563 34 1 6.2527 0.6287 -0.9070 35 1 7.4240 -1.1577 0.3093 36 1 3.2639 -2.3103 3.2009 37 1 1.3643 -4.3616 2.8018 38 1 2.8786 -5.1032 3.3719 39 1 0.4385 -5.3980 4.8581 40 1 1.5496 -5.3549 6.2956 41 1 -0.7967 -3.6554 6.0618 42 1 0.6747 -3.1794 7.0167 43 1 -2.2369 -0.9668 5.8283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038778005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:17 Heat of formation + Delta-G solvation = -30.376673 kcal Electronic energy + Delta-G solvation = -29866.437920 eV Core-core repulsion = 25635.206650 eV Total energy + Delta-G solvation = -4231.231270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.04236 -40.86432 -39.40821 -38.27873 -37.73779 -34.90706 -34.16765 -32.27555 -31.31859 -30.83608 -28.77299 -28.06758 -27.63325 -24.06929 -23.44864 -23.27143 -22.08629 -20.64038 -20.51547 -19.26232 -18.41639 -17.72602 -17.42965 -16.63771 -16.37948 -15.99817 -15.83896 -15.48508 -15.39382 -15.24253 -15.13020 -14.40707 -14.18753 -13.89797 -13.78293 -13.39696 -13.33751 -13.01836 -12.74024 -12.61530 -12.33591 -12.13760 -11.98281 -11.82479 -11.49215 -11.18298 -11.10104 -10.76704 -10.58698 -10.51427 -10.14019 -9.97056 -9.85994 -9.76693 -9.46103 -8.97394 -8.88406 -8.74213 -8.39811 -6.97120 -5.84190 -3.17053 0.77486 0.97423 2.45392 2.60351 2.87164 3.24989 3.26922 3.32694 3.38900 3.48960 4.07388 4.33496 4.56345 4.68964 4.72871 4.89168 5.06717 5.10356 5.16105 5.29588 5.31901 5.43681 5.55410 5.60176 5.68033 5.83037 5.84279 5.91690 5.96667 6.01194 6.13277 6.21885 6.23316 6.34620 6.54994 6.60005 6.69712 6.75131 7.17348 7.17703 7.34116 7.51651 7.68494 7.89934 7.94851 8.30383 8.95668 9.62692 10.52019 11.32239 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.005451 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.803648 B = 5135.265096 C = 7187.440915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.525 3.475 3 O -0.523 6.523 4 N -0.673 5.673 5 C 0.216 3.784 6 C -0.137 4.137 7 C -0.059 4.059 8 C -0.174 4.174 9 C 0.150 3.850 10 F -0.129 7.129 11 C -0.190 4.190 12 C 0.561 3.439 13 O -0.538 6.538 14 N -0.698 5.698 15 C 0.122 3.878 16 C 0.125 3.875 17 H 0.050 0.950 18 C -0.155 4.155 19 C 0.159 3.841 20 N -0.602 5.602 21 C -0.218 4.218 22 H 0.076 0.924 23 C -0.007 4.007 24 N -0.917 5.917 25 Si 0.894 3.106 26 H -0.267 1.267 27 H -0.290 1.290 28 H -0.292 1.292 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.419 0.581 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.405 0.595 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.323 -0.701 -10.264 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.314 3.686 3 O -0.399 6.399 4 N -0.318 5.318 5 C 0.119 3.881 6 C -0.157 4.157 7 C -0.077 4.077 8 C -0.194 4.194 9 C 0.129 3.871 10 F -0.107 7.107 11 C -0.197 4.197 12 C 0.345 3.655 13 O -0.416 6.416 14 N -0.347 5.347 15 C -0.002 4.002 16 C 0.017 3.983 17 H 0.067 0.933 18 C -0.194 4.194 19 C 0.034 3.966 20 N -0.328 5.328 21 C -0.346 4.346 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.564 5.564 25 Si 0.725 3.275 26 H -0.192 1.192 27 H -0.217 1.217 28 H -0.220 1.220 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.256 0.744 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.240 0.760 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.232 -0.422 -10.708 14.817 hybrid contribution -0.306 0.736 0.113 0.805 sum 9.926 0.313 -10.596 14.522 Atomic orbital electron populations 1.22160 0.90141 1.06281 1.05385 1.21039 0.91100 0.82517 0.73902 1.90688 1.70502 1.31123 1.47541 1.43577 1.04518 1.11018 1.72641 1.17347 0.83283 0.93837 0.93660 1.21326 0.93780 0.99623 1.00993 1.20998 0.93736 0.96938 0.96061 1.21030 1.00957 0.95217 1.02153 1.17288 0.88088 0.87187 0.94515 1.91539 1.80988 1.60295 1.77909 1.19726 0.92915 1.00790 1.06243 1.17838 0.79496 0.85986 0.82218 1.90805 1.57216 1.29323 1.64255 1.46030 1.54285 1.21891 1.12458 1.21861 0.95222 0.88889 0.94274 1.22516 0.92634 0.90958 0.92176 0.93259 1.23762 0.98820 0.97427 0.99344 1.22191 0.99246 0.85753 0.89421 1.46098 1.23965 1.31343 1.31400 1.18923 1.05910 1.02314 1.07419 0.90580 1.24761 0.98021 0.99300 0.98249 1.69821 1.17659 1.41216 1.27713 0.86399 0.78518 0.82937 0.79666 1.19162 1.21658 1.21953 0.87703 0.88439 0.88966 0.74427 0.83145 0.84265 0.84127 0.76005 0.90680 0.91852 0.90472 0.92749 0.90777 0.95587 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.50 36.01 0.34 -1.98 16 2 C 0.52 7.85 7.78 -10.98 -0.09 7.76 16 3 O -0.52 -9.09 14.50 5.56 0.08 -9.01 16 4 N -0.67 -9.49 5.01 -9.69 -0.05 -9.54 16 5 C 0.22 3.12 6.31 -83.49 -0.53 2.59 16 6 C -0.14 -1.75 8.68 -39.43 -0.34 -2.09 16 7 C -0.06 -0.60 10.02 -39.56 -0.40 -1.00 16 8 C -0.17 -1.89 10.00 -39.54 -0.40 -2.28 16 9 C 0.15 2.06 7.29 -38.98 -0.28 1.78 16 10 F -0.13 -1.88 16.83 2.25 0.04 -1.85 16 11 C -0.19 -2.88 5.65 -104.76 -0.59 -3.48 16 12 C 0.56 9.58 5.97 -12.54 -0.07 9.51 16 13 O -0.54 -10.53 17.11 5.28 0.09 -10.44 16 14 N -0.70 -11.79 5.52 -61.40 -0.34 -12.13 16 15 C 0.12 2.11 5.54 -4.04 -0.02 2.09 16 16 C 0.12 2.32 4.33 -66.86 -0.29 2.03 16 17 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.15 -2.71 7.86 -25.81 -0.20 -2.91 16 19 C 0.16 3.52 7.51 -2.98 -0.02 3.50 16 20 N -0.60 -13.99 3.57 -170.76 -0.61 -14.60 16 21 C -0.22 -5.53 10.51 -15.06 -0.16 -5.68 16 22 H 0.08 1.85 7.80 -52.48 -0.41 1.44 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 24 N -0.92 -25.98 11.38 55.49 0.63 -25.35 16 25 Si 0.89 20.43 28.66 -169.99 -4.87 15.56 16 26 H -0.27 -5.54 5.31 56.52 0.30 -5.24 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.10 1.54 6.25 -51.93 -0.32 1.22 16 30 H 0.10 1.24 8.12 -51.93 -0.42 0.82 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.42 5.56 8.19 -40.82 -0.33 5.22 16 33 H 0.15 1.96 6.20 -52.49 -0.33 1.63 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.41 6.87 8.46 -40.82 -0.35 6.52 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.32 8.10 -51.92 -0.42 0.90 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.83 7.15 -51.92 -0.37 1.46 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -31.91 368.10 -8.20 -40.11 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.57 Total: 12.14 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -3.15 Total: 9.56 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.37 Total: -61.63 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.45 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.87 Total: 15.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.91 -8.20 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038778005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.733 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds