Wall clock time and date at job start Tue Mar 31 2020 18:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21275 * 120.00321 * 2 1 4 4 N 1.34775 * 119.99577 * 180.02562 * 2 1 3 5 5 C 1.39299 * 119.99691 * 184.00915 * 4 2 1 6 6 C 1.38775 * 120.15109 * 325.34733 * 5 4 2 7 7 C 1.38097 * 120.13883 * 179.97438 * 6 5 4 8 8 C 1.38431 * 120.45468 * 0.02661 * 7 6 5 9 9 C 1.38147 * 120.29601 * 359.97438 * 8 7 6 10 10 F 1.35101 * 120.07269 * 180.02562 * 9 8 7 11 11 C 1.39942 * 119.84919 * 359.72445 * 9 8 7 12 12 C 1.47381 * 120.21867 * 180.27807 * 11 9 8 13 13 O 1.21602 * 119.99910 * 270.24743 * 12 11 9 14 14 N 1.34778 * 119.99656 * 90.25158 * 12 11 9 15 15 C 1.46505 * 119.99703 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46924 * 179.97438 * 15 14 12 17 17 H 1.08996 * 112.96760 * 306.68282 * 16 15 14 18 18 C 1.53945 * 113.76739 * 174.99837 * 16 15 14 19 19 C 1.53937 * 86.29079 * 222.09543 * 18 16 15 20 20 N 1.47575 * 86.12138 * 23.60909 * 19 18 16 21 21 C 1.36934 * 134.49926 * 155.36206 * 20 19 18 22 22 H 1.08004 * 120.00473 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99874 * 359.97438 * 21 20 19 24 24 N 1.31621 * 119.99871 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00196 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47321 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47324 * 120.00447 * 25 23 21 28 28 H 1.48502 * 109.47242 * 240.00375 * 25 23 21 29 29 H 1.09002 * 109.47005 * 239.99673 * 1 2 3 30 30 H 1.08995 * 109.46903 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47470 * 119.99691 * 1 2 3 32 32 H 0.97000 * 120.00483 * 4.29230 * 4 2 1 33 33 H 1.07999 * 119.93131 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.77281 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.84955 * 180.02562 * 8 7 6 36 36 H 0.96999 * 120.00309 * 0.02562 * 14 12 11 37 37 H 1.08998 * 109.47236 * 299.99830 * 15 14 12 38 38 H 1.08998 * 109.46981 * 59.99800 * 15 14 12 39 39 H 1.09008 * 113.74000 * 336.44035 * 18 16 15 40 40 H 1.08996 * 113.74115 * 107.64272 * 18 16 15 41 41 H 1.09008 * 113.77341 * 137.91160 * 19 18 16 42 42 H 1.08999 * 113.76954 * 269.19528 * 19 18 16 43 43 H 0.97003 * 119.99932 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5713 -1.1688 0.0838 6 6 4.3073 -0.1589 -0.5197 7 6 5.6857 -0.1604 -0.4354 8 6 6.3458 -1.1663 0.2492 9 6 5.6313 -2.1806 0.8568 10 9 6.2800 -3.1599 1.5242 11 6 4.2337 -2.1880 0.7847 12 6 3.4631 -3.2628 1.4351 13 8 3.1977 -4.2781 0.8207 14 7 3.0525 -3.1204 2.7109 15 6 2.2860 -4.1885 3.3573 16 6 1.9480 -3.7774 4.7917 17 1 2.8246 -3.4781 5.3661 18 6 1.0371 -4.7782 5.5257 19 6 0.2880 -3.5468 6.0661 20 7 0.8188 -2.8321 4.8891 21 6 0.4229 -1.7332 4.1744 22 1 1.0039 -1.4025 3.3262 23 6 -0.7259 -1.0448 4.5395 24 7 -1.4343 -1.4480 5.5730 25 14 -1.2665 0.4538 3.5642 26 1 -0.3061 0.6974 2.4581 27 1 -2.6198 0.2160 3.0008 28 1 -1.3037 1.6391 4.4580 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6979 -2.0061 -0.0638 33 1 3.8011 0.6299 -1.0563 34 1 6.2527 0.6287 -0.9070 35 1 7.4240 -1.1577 0.3093 36 1 3.2639 -2.3103 3.2009 37 1 1.3643 -4.3616 2.8018 38 1 2.8786 -5.1032 3.3719 39 1 0.4385 -5.3980 4.8581 40 1 1.5496 -5.3549 6.2956 41 1 -0.7967 -3.6554 6.0618 42 1 0.6747 -3.1794 7.0167 43 1 -2.2369 -0.9668 5.8283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038778005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:16 Heat of formation + Delta-G solvation = -52.290052 kcal Electronic energy + Delta-G solvation = -29867.388155 eV Core-core repulsion = 25635.206650 eV Total energy + Delta-G solvation = -4232.181506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.10692 -41.99016 -40.74675 -39.70325 -39.01216 -35.99953 -35.62122 -34.20283 -32.40870 -31.86227 -29.96170 -29.73201 -29.09938 -25.29196 -25.25123 -24.29878 -23.54546 -21.81627 -21.73090 -20.89572 -19.58902 -19.00518 -18.53102 -18.28348 -17.58382 -17.30919 -16.99551 -16.87221 -16.63237 -16.49660 -16.30650 -15.87968 -15.62654 -15.37539 -15.06733 -14.83136 -14.59630 -14.40554 -13.83083 -13.66608 -13.49814 -13.44314 -13.22972 -13.10866 -12.96902 -12.90255 -12.71772 -12.46839 -12.11560 -11.80703 -11.64125 -11.53878 -11.43724 -11.11246 -11.02010 -10.83551 -10.17428 -10.00337 -9.41769 -8.88532 -7.85190 -5.17581 -0.22630 -0.00913 1.27684 1.33756 1.41759 1.48134 1.54738 1.81548 2.02495 2.44879 2.48382 3.06840 3.29948 3.38599 3.51157 3.58848 3.81247 3.89518 3.97936 4.07882 4.17729 4.21175 4.32564 4.35473 4.45307 4.58979 4.67993 4.72177 4.86011 4.90439 4.92559 5.00863 5.06054 5.06274 5.18905 5.26731 5.28633 5.33816 5.61293 5.73063 5.74348 5.97841 6.08704 6.31856 6.82450 6.94012 6.96911 7.66520 8.61061 9.31339 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.005451 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.803648 B = 5135.265096 C = 7187.440915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.521 3.479 3 O -0.551 6.551 4 N -0.670 5.670 5 C 0.197 3.803 6 C -0.143 4.143 7 C -0.042 4.042 8 C -0.158 4.158 9 C 0.134 3.866 10 F -0.138 7.138 11 C -0.210 4.210 12 C 0.565 3.435 13 O -0.567 6.567 14 N -0.696 5.696 15 C 0.131 3.869 16 C 0.130 3.870 17 H 0.065 0.935 18 C -0.128 4.128 19 C 0.150 3.850 20 N -0.626 5.626 21 C -0.206 4.206 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.949 3.051 26 H -0.238 1.238 27 H -0.291 1.291 28 H -0.312 1.312 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.420 0.580 33 H 0.148 0.852 34 H 0.180 0.820 35 H 0.175 0.825 36 H 0.405 0.595 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.018 0.982 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.749 -0.489 -11.782 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.312 3.688 3 O -0.429 6.429 4 N -0.314 5.314 5 C 0.100 3.900 6 C -0.164 4.164 7 C -0.060 4.060 8 C -0.177 4.177 9 C 0.114 3.886 10 F -0.116 7.116 11 C -0.216 4.216 12 C 0.351 3.649 13 O -0.448 6.448 14 N -0.345 5.345 15 C 0.007 3.993 16 C 0.024 3.976 17 H 0.082 0.918 18 C -0.167 4.167 19 C 0.025 3.975 20 N -0.353 5.353 21 C -0.334 4.334 22 H 0.101 0.899 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.779 3.221 26 H -0.161 1.161 27 H -0.218 1.218 28 H -0.241 1.241 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.257 0.743 33 H 0.166 0.834 34 H 0.198 0.802 35 H 0.193 0.807 36 H 0.240 0.760 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.703 -0.244 -12.245 17.646 hybrid contribution -0.942 0.633 0.571 1.271 sum 11.761 0.389 -11.674 16.575 Atomic orbital electron populations 1.22192 0.88703 1.06757 1.06225 1.21395 0.91851 0.82250 0.73299 1.90666 1.71160 1.31955 1.49077 1.43567 1.04748 1.10884 1.72239 1.17556 0.83413 0.94465 0.94540 1.21479 0.94997 0.98973 1.00906 1.21460 0.92812 0.97220 0.94508 1.21423 1.02527 0.93625 1.00164 1.17589 0.87744 0.87967 0.95328 1.91515 1.80982 1.60863 1.78242 1.19633 0.93572 1.00837 1.07587 1.18107 0.78930 0.86035 0.81853 1.90779 1.58415 1.30744 1.64813 1.46022 1.54080 1.21717 1.12646 1.21678 0.94828 0.89704 0.93113 1.22656 0.92033 0.89746 0.93174 0.91814 1.23553 0.97571 0.95921 0.99626 1.22150 0.97815 0.88428 0.89144 1.46444 1.25953 1.31298 1.31592 1.19248 1.05124 1.02038 1.07038 0.89900 1.25490 0.98805 1.02246 0.99627 1.70010 1.18095 1.42532 1.29786 0.85526 0.78576 0.79106 0.78937 1.16139 1.21841 1.24057 0.89436 0.88149 0.85437 0.74289 0.83418 0.80225 0.80745 0.75990 0.92616 0.90060 0.89956 0.89021 0.94065 0.96410 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.36 9.50 71.24 0.68 -3.68 16 2 C 0.52 15.05 7.78 87.66 0.68 15.73 16 3 O -0.55 -18.55 14.50 -3.01 -0.04 -18.59 16 4 N -0.67 -18.42 5.01 -302.96 -1.52 -19.94 16 5 C 0.20 5.47 6.31 38.59 0.24 5.71 16 6 C -0.14 -3.36 8.68 22.36 0.19 -3.16 16 7 C -0.04 -0.70 10.02 22.28 0.22 -0.48 16 8 C -0.16 -2.84 10.00 22.29 0.22 -2.62 16 9 C 0.13 3.42 7.29 22.66 0.17 3.59 16 10 F -0.14 -3.79 16.83 44.97 0.76 -3.03 16 11 C -0.21 -6.14 5.65 -19.95 -0.11 -6.25 16 12 C 0.57 18.99 5.97 86.65 0.52 19.51 16 13 O -0.57 -22.07 17.11 -4.04 -0.07 -22.13 16 14 N -0.70 -22.96 5.52 -466.41 -2.58 -25.53 16 15 C 0.13 4.39 5.54 86.38 0.48 4.87 16 16 C 0.13 4.64 4.33 45.09 0.20 4.83 16 17 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 18 C -0.13 -4.26 7.86 31.25 0.25 -4.01 16 19 C 0.15 6.71 7.51 86.48 0.65 7.36 16 20 N -0.63 -29.13 3.57 -694.15 -2.48 -31.61 16 21 C -0.21 -10.50 10.51 84.03 0.88 -9.61 16 22 H 0.08 4.01 7.80 -2.91 -0.02 3.99 16 23 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 24 N -0.95 -56.00 11.38 21.65 0.25 -55.75 16 25 Si 0.95 42.90 28.66 68.60 1.97 44.87 16 26 H -0.24 -9.46 5.31 99.48 0.53 -8.93 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 29 H 0.09 2.47 6.25 -2.39 -0.01 2.45 16 30 H 0.10 2.37 8.12 -2.39 -0.02 2.35 16 31 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.42 11.03 8.19 -92.71 -0.76 10.28 16 33 H 0.15 3.58 6.20 -2.91 -0.02 3.57 16 34 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 36 H 0.41 13.40 8.46 -92.71 -0.78 12.62 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.08 2.68 8.10 -2.38 -0.02 2.66 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.04 2.10 7.15 -2.38 -0.02 2.09 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -71.47 368.10 1.36 -70.10 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.65 Total: 33.12 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 5.73 Total: 28.50 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -6.33 Total: -132.83 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.11 Total: -40.73 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.76 Total: -3.03 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.97 Total: 44.87 kcal Total: -71.47 1.36 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038778005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.812 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds