Wall clock time and date at job start Tue Mar 31 2020 18:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21294 * 120.00246 * 2 1 4 4 N 1.34776 * 119.99943 * 180.02562 * 2 1 3 5 5 C 1.40072 * 120.00232 * 185.52850 * 4 2 1 6 6 C 1.38468 * 120.00547 * 24.82043 * 5 4 2 7 7 C 1.39572 * 119.80417 * 179.97438 * 6 5 4 8 8 C 1.47740 * 120.09022 * 180.02562 * 7 6 5 9 9 O 1.21570 * 119.99786 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99901 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99616 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46863 * 179.97438 * 11 10 8 13 13 H 1.09001 * 112.96019 * 53.32640 * 12 11 10 14 14 C 1.53940 * 113.76771 * 184.99826 * 12 11 10 15 15 C 1.53941 * 86.28833 * 137.91106 * 14 12 11 16 16 N 1.47574 * 86.11713 * 336.39096 * 15 14 12 17 17 C 1.36940 * 134.49441 * 204.63971 * 16 15 14 18 18 H 1.08000 * 119.99830 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99863 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99630 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47449 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46805 * 120.00370 * 21 19 17 24 24 H 1.48497 * 109.46822 * 240.00175 * 21 19 17 25 25 C 1.39660 * 119.82095 * 359.73316 * 7 6 5 26 26 C 1.37897 * 120.01416 * 0.54563 * 25 7 6 27 27 C 1.38509 * 120.19161 * 359.45350 * 26 25 7 28 28 F 1.35099 * 119.90749 * 180.25579 * 27 26 25 29 29 H 1.09001 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46817 * 300.00240 * 1 2 3 31 31 H 1.09006 * 109.47273 * 59.99700 * 1 2 3 32 32 H 0.97006 * 119.99956 * 5.52564 * 4 2 1 33 33 H 1.07996 * 120.09974 * 0.02562 * 6 5 4 34 34 H 0.96998 * 120.00390 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47054 * 299.99785 * 11 10 8 36 36 H 1.08997 * 109.47260 * 60.00264 * 11 10 8 37 37 H 1.09007 * 113.74102 * 252.25447 * 14 12 11 38 38 H 1.08995 * 113.74543 * 23.45650 * 14 12 11 39 39 H 1.09005 * 113.77499 * 90.69797 * 15 14 12 40 40 H 1.09004 * 113.77224 * 221.98082 * 15 14 12 41 41 H 0.96995 * 120.00219 * 180.02562 * 20 19 17 42 42 H 1.08006 * 119.99569 * 180.28937 * 25 7 6 43 43 H 1.07999 * 119.90523 * 179.72646 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1701 0.1163 6 6 4.2226 -0.1090 0.7280 7 6 5.6136 -0.1166 0.8427 8 6 6.3092 1.0121 1.4947 9 8 5.6699 1.9488 1.9326 10 7 7.6525 1.0031 1.6039 11 6 8.3422 2.1221 2.2510 12 6 9.8503 1.8642 2.2440 13 1 10.2396 1.6448 1.2498 14 6 10.6644 2.9232 3.0092 15 6 11.4833 1.7454 3.5677 16 7 10.2964 0.9159 3.2830 17 6 9.8060 -0.2612 3.7823 18 1 8.8874 -0.6727 3.3908 19 6 10.4902 -0.9259 4.7908 20 7 11.6099 -0.4247 5.2674 21 14 9.8215 -2.5320 5.4713 22 1 8.5586 -2.8787 4.7713 23 1 10.8177 -3.6126 5.2585 24 1 9.5572 -2.3816 6.9248 25 6 6.3456 -1.1967 0.3449 26 6 5.6952 -2.2469 -0.2680 27 6 4.3149 -2.2400 -0.3822 28 9 3.6832 -3.2743 -0.9791 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6992 -2.0053 -0.0818 33 1 3.6517 0.7216 1.1160 34 1 8.1626 0.2559 1.2542 35 1 8.1282 3.0431 1.7089 36 1 7.9949 2.2169 3.2798 37 1 11.2369 3.5883 2.3626 38 1 10.0888 3.4573 3.7652 39 1 12.3535 1.4895 2.9632 40 1 11.7144 1.8351 4.6292 41 1 12.0881 -0.8893 5.9718 42 1 7.4218 -1.2077 0.4363 43 1 6.2635 -3.0792 -0.6563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039074299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:39 Heat of formation + Delta-G solvation = -28.089369 kcal Electronic energy + Delta-G solvation = -28386.112295 eV Core-core repulsion = 24154.980210 eV Total energy + Delta-G solvation = -4231.132086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.25525 -40.85810 -39.67574 -38.26909 -37.63941 -35.18395 -34.13274 -32.20978 -31.36824 -30.99357 -29.02465 -27.98620 -27.50564 -24.04501 -23.49256 -23.37872 -22.01541 -20.97470 -20.38509 -19.25914 -18.62145 -17.70332 -17.34139 -16.87525 -16.48644 -16.31737 -15.91831 -15.55270 -15.31984 -15.22446 -14.58304 -14.53275 -14.26964 -13.89903 -13.78521 -13.46848 -13.33297 -13.15578 -13.05281 -12.86840 -12.77067 -12.37029 -11.87616 -11.76783 -11.44542 -11.11490 -11.03593 -10.91304 -10.75667 -10.54200 -10.11925 -10.05542 -9.76643 -9.72167 -9.38136 -9.06940 -8.81769 -8.61563 -8.40993 -6.90845 -5.78079 -3.10583 0.51069 0.95978 2.16163 2.56064 2.86891 3.36210 3.41206 3.44033 3.44514 3.75948 3.82606 4.26624 4.41401 4.47374 4.67970 4.76183 4.85504 4.95964 5.04237 5.10720 5.19642 5.35803 5.39871 5.57035 5.61155 5.71572 5.80258 5.87789 5.91301 5.99504 6.10001 6.16158 6.32232 6.40394 6.60395 6.62179 6.70094 6.86107 6.90666 7.23989 7.40342 7.58480 7.67685 7.84005 7.96994 8.49689 9.02754 9.69647 10.57948 11.38742 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003080 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.898032 B = 9088.560149 C =10213.912362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.514 6.514 4 N -0.669 5.669 5 C 0.106 3.894 6 C -0.050 4.050 7 C -0.114 4.114 8 C 0.554 3.446 9 O -0.539 6.539 10 N -0.707 5.707 11 C 0.123 3.877 12 C 0.125 3.875 13 H 0.050 0.950 14 C -0.155 4.155 15 C 0.159 3.841 16 N -0.603 5.603 17 C -0.219 4.219 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C -0.073 4.073 26 C -0.136 4.136 27 C 0.084 3.916 28 F -0.136 7.136 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.415 0.585 33 H 0.168 0.832 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.142 0.858 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 -2.596 -13.332 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.296 3.704 3 O -0.388 6.388 4 N -0.315 5.315 5 C 0.011 3.989 6 C -0.071 4.071 7 C -0.118 4.118 8 C 0.340 3.660 9 O -0.417 6.417 10 N -0.357 5.357 11 C -0.002 4.002 12 C 0.018 3.982 13 H 0.068 0.932 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.736 3.264 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.093 4.093 26 C -0.155 4.155 27 C 0.062 3.938 28 F -0.115 7.115 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.251 0.749 33 H 0.186 0.814 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.160 0.840 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.294 -1.444 -12.796 21.561 hybrid contribution -0.290 -2.227 0.021 2.246 sum -17.584 -3.672 -12.775 22.043 Atomic orbital electron populations 1.21857 0.90183 1.04667 1.06005 1.21116 0.91112 0.82898 0.75250 1.90789 1.70059 1.31121 1.46824 1.43578 1.04566 1.10547 1.72809 1.17605 0.83566 0.96196 1.01557 1.21417 0.93456 0.97887 0.94314 1.20036 0.93783 0.96008 1.01978 1.18023 0.82467 0.85906 0.79578 1.90774 1.66053 1.35957 1.48935 1.45878 1.05974 1.24414 1.59431 1.21818 0.92632 0.87724 0.97978 1.22514 0.91139 0.90849 0.93726 0.93243 1.23770 0.99333 0.96894 0.99445 1.22195 0.89401 0.84851 1.00197 1.46082 1.24141 1.23976 1.38723 1.18985 1.04720 0.96532 1.14421 0.90310 1.24756 0.97199 0.99050 0.99346 1.69822 1.17017 1.39572 1.30203 0.86142 0.77902 0.83395 0.78920 1.20480 1.21790 1.21723 1.21284 1.00760 0.91864 0.95387 1.20913 0.91561 1.00788 1.02240 1.17570 0.90762 0.86143 0.99284 1.91477 1.82361 1.56344 1.81321 0.90247 0.87955 0.88159 0.74891 0.81447 0.76282 0.91898 0.90729 0.92775 0.90455 0.95555 0.90828 0.93730 0.83993 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.39 36.01 0.37 -0.46 16 2 C 0.51 5.08 7.74 -10.99 -0.09 5.00 16 3 O -0.51 -7.65 14.27 5.55 0.08 -7.58 16 4 N -0.67 -6.21 5.31 -9.84 -0.05 -6.26 16 5 C 0.11 1.30 6.43 -83.64 -0.54 0.76 16 6 C -0.05 -0.75 8.26 -39.00 -0.32 -1.07 16 7 C -0.11 -1.73 5.87 -104.99 -0.62 -2.34 16 8 C 0.55 9.94 7.77 -12.38 -0.10 9.84 16 9 O -0.54 -11.44 16.34 5.30 0.09 -11.35 16 10 N -0.71 -12.07 5.48 -61.28 -0.34 -12.40 16 11 C 0.12 2.23 5.54 -4.04 -0.02 2.21 16 12 C 0.13 2.37 4.33 -66.87 -0.29 2.08 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.16 -2.81 7.86 -25.81 -0.20 -3.01 16 15 C 0.16 3.60 7.51 -2.98 -0.02 3.58 16 16 N -0.60 -14.47 3.57 -170.78 -0.61 -15.08 16 17 C -0.22 -5.79 10.51 -15.06 -0.16 -5.95 16 18 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -26.75 11.39 55.49 0.63 -26.12 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C -0.07 -0.91 9.53 -39.18 -0.37 -1.28 16 26 C -0.14 -1.47 10.00 -39.61 -0.40 -1.87 16 27 C 0.08 0.95 7.31 -39.12 -0.29 0.66 16 28 F -0.14 -1.40 16.80 2.25 0.04 -1.36 16 29 H 0.08 0.18 7.92 -51.93 -0.41 -0.23 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 2.46 8.29 -40.82 -0.34 2.12 16 33 H 0.17 2.87 5.37 -52.49 -0.28 2.58 16 34 H 0.40 6.27 6.50 -40.82 -0.27 6.00 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.14 1.56 6.39 -52.48 -0.34 1.22 16 43 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -35.05 369.49 -8.10 -43.15 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.35 Total: 6.76 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -3.13 Total: 7.87 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.37 Total: -59.86 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.17 Total: -18.93 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.05 -8.10 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039074299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.064 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds