Wall clock time and date at job start Tue Mar 31 2020 18:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21294 * 120.00246 * 2 1 4 4 N 1.34776 * 119.99943 * 180.02562 * 2 1 3 5 5 C 1.40072 * 120.00232 * 185.52850 * 4 2 1 6 6 C 1.38468 * 120.00547 * 24.82043 * 5 4 2 7 7 C 1.39572 * 119.80417 * 179.97438 * 6 5 4 8 8 C 1.47740 * 120.09022 * 180.02562 * 7 6 5 9 9 O 1.21570 * 119.99786 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99901 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99616 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46863 * 179.97438 * 11 10 8 13 13 H 1.09001 * 112.96019 * 53.32640 * 12 11 10 14 14 C 1.53940 * 113.76771 * 184.99826 * 12 11 10 15 15 C 1.53941 * 86.28833 * 137.91106 * 14 12 11 16 16 N 1.47574 * 86.11713 * 336.39096 * 15 14 12 17 17 C 1.36940 * 134.49441 * 204.63971 * 16 15 14 18 18 H 1.08000 * 119.99830 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99863 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99630 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47449 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46805 * 120.00370 * 21 19 17 24 24 H 1.48497 * 109.46822 * 240.00175 * 21 19 17 25 25 C 1.39660 * 119.82095 * 359.73316 * 7 6 5 26 26 C 1.37897 * 120.01416 * 0.54563 * 25 7 6 27 27 C 1.38509 * 120.19161 * 359.45350 * 26 25 7 28 28 F 1.35099 * 119.90749 * 180.25579 * 27 26 25 29 29 H 1.09001 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46817 * 300.00240 * 1 2 3 31 31 H 1.09006 * 109.47273 * 59.99700 * 1 2 3 32 32 H 0.97006 * 119.99956 * 5.52564 * 4 2 1 33 33 H 1.07996 * 120.09974 * 0.02562 * 6 5 4 34 34 H 0.96998 * 120.00390 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47054 * 299.99785 * 11 10 8 36 36 H 1.08997 * 109.47260 * 60.00264 * 11 10 8 37 37 H 1.09007 * 113.74102 * 252.25447 * 14 12 11 38 38 H 1.08995 * 113.74543 * 23.45650 * 14 12 11 39 39 H 1.09005 * 113.77499 * 90.69797 * 15 14 12 40 40 H 1.09004 * 113.77224 * 221.98082 * 15 14 12 41 41 H 0.96995 * 120.00219 * 180.02562 * 20 19 17 42 42 H 1.08006 * 119.99569 * 180.28937 * 25 7 6 43 43 H 1.07999 * 119.90523 * 179.72646 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1701 0.1163 6 6 4.2226 -0.1090 0.7280 7 6 5.6136 -0.1166 0.8427 8 6 6.3092 1.0121 1.4947 9 8 5.6699 1.9488 1.9326 10 7 7.6525 1.0031 1.6039 11 6 8.3422 2.1221 2.2510 12 6 9.8503 1.8642 2.2440 13 1 10.2396 1.6448 1.2498 14 6 10.6644 2.9232 3.0092 15 6 11.4833 1.7454 3.5677 16 7 10.2964 0.9159 3.2830 17 6 9.8060 -0.2612 3.7823 18 1 8.8874 -0.6727 3.3908 19 6 10.4902 -0.9259 4.7908 20 7 11.6099 -0.4247 5.2674 21 14 9.8215 -2.5320 5.4713 22 1 8.5586 -2.8787 4.7713 23 1 10.8177 -3.6126 5.2585 24 1 9.5572 -2.3816 6.9248 25 6 6.3456 -1.1967 0.3449 26 6 5.6952 -2.2469 -0.2680 27 6 4.3149 -2.2400 -0.3822 28 9 3.6832 -3.2743 -0.9791 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6992 -2.0053 -0.0818 33 1 3.6517 0.7216 1.1160 34 1 8.1626 0.2559 1.2542 35 1 8.1282 3.0431 1.7089 36 1 7.9949 2.2169 3.2798 37 1 11.2369 3.5883 2.3626 38 1 10.0888 3.4573 3.7652 39 1 12.3535 1.4895 2.9632 40 1 11.7144 1.8351 4.6292 41 1 12.0881 -0.8893 5.9718 42 1 7.4218 -1.2077 0.4363 43 1 6.2635 -3.0792 -0.6563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039074299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:38 Heat of formation + Delta-G solvation = -53.023640 kcal Electronic energy + Delta-G solvation = -28387.193527 eV Core-core repulsion = 24154.980210 eV Total energy + Delta-G solvation = -4232.213317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.12580 -41.80958 -40.92117 -39.71801 -38.93564 -36.13062 -35.60010 -34.19123 -32.15519 -32.05405 -29.97785 -29.74021 -28.90444 -25.27545 -25.24699 -24.42591 -23.50404 -21.91155 -21.58342 -20.87712 -19.77408 -18.83311 -18.33447 -18.24422 -17.66397 -17.39590 -17.10227 -16.91377 -16.47672 -16.30254 -16.21492 -15.80701 -15.55382 -15.34668 -14.92592 -14.77097 -14.63338 -14.33500 -13.98667 -13.76586 -13.53174 -13.43956 -13.27362 -13.06824 -12.95841 -12.76537 -12.63820 -12.55981 -12.26433 -11.86116 -11.84219 -11.51326 -11.42133 -11.01663 -10.97858 -10.81916 -10.21293 -9.95105 -9.34844 -8.86466 -7.84765 -5.16321 -0.52536 -0.01309 1.32773 1.44695 1.46751 1.54991 1.71694 1.82197 2.11590 2.49058 2.60577 2.88062 3.32673 3.39793 3.49743 3.61645 3.71511 3.92806 3.99902 4.01522 4.11662 4.29165 4.36384 4.43378 4.60399 4.61829 4.65805 4.73875 4.79925 4.87572 4.94704 5.01935 5.08042 5.10032 5.10934 5.14963 5.35697 5.39387 5.63600 5.65877 5.76633 6.00221 6.21835 6.47788 6.95130 6.97843 7.12336 7.67821 8.62323 9.32435 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003080 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.898032 B = 9088.560149 C =10213.912362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.501 3.499 3 O -0.569 6.569 4 N -0.659 5.659 5 C 0.104 3.896 6 C -0.069 4.069 7 C -0.134 4.134 8 C 0.552 3.448 9 O -0.582 6.582 10 N -0.701 5.701 11 C 0.131 3.869 12 C 0.134 3.866 13 H 0.076 0.924 14 C -0.132 4.132 15 C 0.150 3.850 16 N -0.629 5.629 17 C -0.210 4.210 18 H 0.087 0.913 19 C -0.071 4.071 20 N -0.955 5.955 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.292 1.292 24 H -0.302 1.302 25 C -0.070 4.070 26 C -0.125 4.125 27 C 0.095 3.905 28 F -0.125 7.125 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.432 0.568 33 H 0.139 0.861 34 H 0.410 0.590 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.024 0.976 40 H 0.038 0.962 41 H 0.244 0.756 42 H 0.157 0.843 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 -4.318 -15.607 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.293 3.707 3 O -0.448 6.448 4 N -0.306 5.306 5 C 0.007 3.993 6 C -0.090 4.090 7 C -0.138 4.138 8 C 0.340 3.660 9 O -0.463 6.463 10 N -0.351 5.351 11 C 0.006 3.994 12 C 0.028 3.972 13 H 0.093 0.907 14 C -0.170 4.170 15 C 0.025 3.975 16 N -0.356 5.356 17 C -0.339 4.339 18 H 0.105 0.895 19 C -0.264 4.264 20 N -0.605 5.605 21 Si 0.794 3.206 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.229 1.229 25 C -0.089 4.089 26 C -0.143 4.143 27 C 0.073 3.927 28 F -0.104 7.104 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.272 0.728 33 H 0.157 0.843 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.175 0.825 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -18.768 -3.208 -15.120 24.314 hybrid contribution 0.091 -1.684 0.644 1.805 sum -18.678 -4.892 -14.476 24.132 Atomic orbital electron populations 1.21921 0.85899 1.07210 1.06682 1.22124 0.93057 0.82045 0.73523 1.90777 1.71542 1.33111 1.49349 1.43633 1.03542 1.11458 1.71988 1.17634 0.85041 0.95674 1.00907 1.21210 0.93511 0.98338 0.95931 1.19856 0.93916 0.96262 1.03744 1.18485 0.82463 0.86148 0.78898 1.90743 1.66873 1.37823 1.50907 1.45807 1.05889 1.24412 1.59016 1.21630 0.92104 0.88982 0.96703 1.22679 0.91509 0.89371 0.93691 0.90666 1.23574 0.98132 0.95940 0.99399 1.22162 0.89742 0.87252 0.98358 1.46426 1.24919 1.23839 1.40405 1.19356 1.04375 0.96765 1.13401 0.89526 1.25500 0.97991 1.02278 1.00596 1.70002 1.18537 1.40862 1.31105 0.85210 0.77818 0.80078 0.77541 1.18742 1.21955 1.22941 1.21412 1.01356 0.91222 0.94913 1.21253 0.91483 1.00866 1.00726 1.17566 0.90971 0.85774 0.98373 1.91513 1.82236 1.55664 1.80941 0.86799 0.87453 0.87065 0.72793 0.84303 0.75280 0.90068 0.93815 0.88710 0.90512 0.95774 0.94401 0.94647 0.82518 0.80190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.39 71.24 0.74 -0.48 16 2 C 0.50 9.75 7.74 87.66 0.68 10.43 16 3 O -0.57 -17.69 14.27 -3.07 -0.04 -17.73 16 4 N -0.66 -11.26 5.31 -303.43 -1.61 -12.87 16 5 C 0.10 2.43 6.43 38.11 0.25 2.67 16 6 C -0.07 -2.09 8.26 22.65 0.19 -1.91 16 7 C -0.13 -4.04 5.87 -20.10 -0.12 -4.15 16 8 C 0.55 20.07 7.77 86.76 0.67 20.75 16 9 O -0.58 -25.73 16.34 -3.94 -0.06 -25.80 16 10 N -0.70 -23.42 5.48 -466.05 -2.55 -25.97 16 11 C 0.13 4.63 5.54 86.38 0.48 5.11 16 12 C 0.13 4.81 4.33 45.09 0.20 5.00 16 13 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.13 -4.52 7.86 31.25 0.25 -4.28 16 15 C 0.15 6.82 7.51 86.48 0.65 7.47 16 16 N -0.63 -29.95 3.57 -694.24 -2.48 -32.43 16 17 C -0.21 -11.08 10.51 84.03 0.88 -10.19 16 18 H 0.09 4.31 7.80 -2.91 -0.02 4.28 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.95 -57.09 11.39 21.65 0.25 -56.84 16 21 Si 0.96 45.21 29.55 68.60 2.03 47.24 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 C -0.07 -1.58 9.53 22.53 0.21 -1.36 16 26 C -0.12 -2.28 10.00 22.25 0.22 -2.05 16 27 C 0.10 1.88 7.31 22.57 0.17 2.04 16 28 F -0.13 -2.10 16.80 44.97 0.76 -1.35 16 29 H 0.11 0.08 7.92 -2.39 -0.02 0.07 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.43 3.97 8.29 -92.70 -0.77 3.20 16 33 H 0.14 5.11 5.37 -2.91 -0.02 5.09 16 34 H 0.41 12.13 6.50 -92.71 -0.60 11.53 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 39 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.04 1.98 7.16 -2.39 -0.02 1.96 16 41 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.16 3.02 6.39 -2.91 -0.02 3.00 16 43 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -80.38 369.49 1.91 -78.47 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.29 Total: 21.75 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 5.93 Total: 25.54 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -6.40 Total: -128.12 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.11 Total: -43.53 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.76 Total: -1.35 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -80.38 1.91 -78.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039074299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.448 kcal (2) G-P(sol) polarization free energy of solvation -80.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds