Wall clock time and date at job start Tue Mar 31 2020 18:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21290 * 120.00038 * 2 1 4 4 N 1.34768 * 119.99951 * 180.02562 * 2 1 3 5 5 C 1.40066 * 120.00129 * 184.60865 * 4 2 1 6 6 C 1.39038 * 119.96019 * 324.87601 * 5 4 2 7 7 C 1.38113 * 120.26922 * 180.02562 * 6 5 4 8 8 C 1.38339 * 120.19405 * 359.97438 * 7 6 5 9 9 F 1.35101 * 120.03748 * 179.97438 * 8 7 6 10 10 C 1.39810 * 119.92204 * 359.70468 * 8 7 6 11 11 C 1.47706 * 120.13585 * 180.27554 * 10 8 7 12 12 O 1.21571 * 119.99830 * 0.29021 * 11 10 8 13 13 N 1.34772 * 120.00237 * 180.29948 * 11 10 8 14 14 C 1.46501 * 120.00204 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47402 * 179.97438 * 14 13 11 16 16 H 1.09003 * 112.73313 * 303.76113 * 15 14 13 17 17 C 1.53491 * 113.46644 * 172.94049 * 15 14 13 18 18 C 1.53503 * 83.34031 * 219.14624 * 17 15 14 19 19 N 1.47062 * 87.98455 * 26.06914 * 18 17 15 20 20 C 1.36939 * 136.06014 * 152.91557 * 19 18 17 21 21 H 1.07998 * 120.00435 * 179.97438 * 20 19 18 22 22 C 1.38817 * 119.99910 * 359.94182 * 20 19 18 23 23 N 1.31620 * 119.99537 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00067 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47344 * 90.00465 * 24 22 20 26 26 H 1.48507 * 109.46938 * 210.00391 * 24 22 20 27 27 H 1.48497 * 109.47309 * 330.00391 * 24 22 20 28 28 C 1.38481 * 119.96113 * 144.89024 * 5 4 2 29 29 H 1.08998 * 109.47262 * 239.99901 * 1 2 3 30 30 H 1.09002 * 109.47269 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47493 * 119.99873 * 1 2 3 32 32 H 0.97000 * 120.00508 * 4.60742 * 4 2 1 33 33 H 1.07999 * 119.86636 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.90121 * 179.97438 * 7 6 5 35 35 H 0.97004 * 119.99994 * 359.97438 * 13 11 10 36 36 H 1.09004 * 109.46574 * 299.99746 * 14 13 11 37 37 H 1.08997 * 109.47315 * 59.99442 * 14 13 11 38 38 H 1.08991 * 114.20816 * 332.73491 * 17 15 14 39 39 H 1.09005 * 114.20670 * 105.56548 * 17 15 14 40 40 H 1.08997 * 113.47271 * 271.28629 * 18 17 15 41 41 H 1.09000 * 113.46471 * 140.84946 * 18 17 15 42 42 H 0.97007 * 119.99476 * 179.97438 * 23 22 20 43 43 H 1.07994 * 120.10178 * 359.95917 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.5781 -1.1692 0.0969 6 6 4.3176 -0.1576 -0.5055 7 6 5.6957 -0.1537 -0.4139 8 6 6.3498 -1.1566 0.2789 9 9 7.6980 -1.1499 0.3661 10 6 5.6137 -2.1741 0.8935 11 6 6.3069 -3.2439 1.6395 12 8 7.5196 -3.2380 1.7246 13 7 5.5951 -4.2267 2.2258 14 6 6.2826 -5.2875 2.9663 15 6 5.2513 -6.2681 3.5283 16 1 4.5047 -5.7807 4.1554 17 6 5.8785 -7.5105 4.1756 18 6 4.6987 -8.2328 3.5102 19 7 4.6710 -7.1557 2.5094 20 6 4.2773 -7.0329 1.2036 21 1 4.3752 -6.0842 0.6969 22 6 3.7528 -8.1281 0.5308 23 7 3.6336 -9.2843 1.1483 24 14 3.2164 -7.9608 -1.2506 25 1 4.3608 -8.2741 -2.1437 26 1 2.1030 -8.9050 -1.5230 27 1 2.7590 -6.5705 -1.5014 28 6 4.2213 -2.1789 0.7930 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6982 -2.0058 -0.0684 33 1 3.8124 0.6282 -1.0474 34 1 6.2643 0.6348 -0.8845 35 1 4.6274 -4.2313 2.1582 36 1 6.9607 -5.8169 2.2969 37 1 6.8508 -4.8487 3.7864 38 1 6.8537 -7.7810 3.7711 39 1 5.8460 -7.5114 5.2652 40 1 3.8051 -8.2696 4.1332 41 1 4.9637 -9.2049 3.0945 42 1 3.2668 -10.0495 0.6783 43 1 3.6472 -2.9645 1.2614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039074842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:22 Heat of formation + Delta-G solvation = -25.716671 kcal Electronic energy + Delta-G solvation = -28681.516477 eV Core-core repulsion = 24450.487279 eV Total energy + Delta-G solvation = -4231.029198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.77587 -40.84472 -39.64562 -38.40997 -37.80791 -34.93503 -34.18434 -32.32558 -31.63491 -31.01511 -28.54360 -28.13091 -27.61740 -24.35638 -23.53850 -22.88588 -22.12089 -21.21085 -20.18381 -19.33032 -18.39920 -17.62676 -17.55180 -16.77863 -16.43900 -16.11369 -15.74869 -15.57890 -15.23953 -15.06843 -14.66975 -14.47946 -14.23222 -14.03527 -13.72190 -13.48730 -13.34487 -13.12538 -13.01108 -12.83430 -12.75506 -12.36853 -11.94683 -11.64481 -11.59190 -11.17308 -11.04122 -10.85326 -10.63477 -10.54623 -10.29957 -10.05986 -9.90300 -9.72319 -9.34205 -9.26768 -8.88989 -8.63485 -8.30005 -6.97418 -5.84523 -3.17309 0.61148 0.86688 2.15643 2.66138 2.92236 3.29452 3.33981 3.37673 3.38749 3.66542 4.12155 4.29959 4.35027 4.51606 4.58393 4.82936 4.93493 4.99640 5.00337 5.15064 5.16550 5.32193 5.43952 5.48915 5.51394 5.67170 5.81677 5.85658 5.89953 5.94878 6.06262 6.09114 6.28073 6.35566 6.54517 6.63155 6.65484 6.80878 6.98719 7.15747 7.33293 7.51065 7.70687 7.78264 7.89796 8.44800 8.94769 9.62363 10.55644 11.32602 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.003893 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.512626 B = 7191.532839 C = 8729.838604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.530 6.530 4 N -0.672 5.672 5 C 0.123 3.877 6 C -0.070 4.070 7 C -0.148 4.148 8 C 0.145 3.855 9 F -0.115 7.115 10 C -0.147 4.147 11 C 0.553 3.447 12 O -0.532 6.532 13 N -0.706 5.706 14 C 0.122 3.878 15 C 0.127 3.873 16 H 0.049 0.951 17 C -0.161 4.161 18 C 0.152 3.848 19 N -0.602 5.602 20 C -0.215 4.215 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.908 3.092 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.282 1.282 28 C -0.080 4.080 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.417 0.583 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.401 0.599 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 15.938 0.038 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.406 6.406 4 N -0.318 5.318 5 C 0.029 3.971 6 C -0.090 4.090 7 C -0.167 4.167 8 C 0.124 3.876 9 F -0.093 7.093 10 C -0.152 4.152 11 C 0.339 3.661 12 O -0.410 6.410 13 N -0.356 5.356 14 C -0.003 4.003 15 C 0.019 3.981 16 H 0.066 0.934 17 C -0.200 4.200 18 C 0.026 3.974 19 N -0.328 5.328 20 C -0.343 4.343 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.563 5.563 24 Si 0.739 3.261 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.101 4.101 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.254 0.746 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.236 0.764 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.100 16.553 -0.198 17.055 hybrid contribution -1.021 -0.511 -1.037 1.543 sum -5.121 16.042 -1.235 16.885 Atomic orbital electron populations 1.21936 0.90367 1.06060 1.04948 1.21056 0.91037 0.82939 0.74835 1.90725 1.70530 1.31313 1.48001 1.43607 1.04773 1.10442 1.73025 1.17560 0.83098 0.97322 0.99139 1.21270 0.92535 0.98288 0.96906 1.21043 0.94734 0.99130 1.01836 1.17686 0.77671 0.94754 0.97475 1.91591 1.27927 1.95897 1.93884 1.19930 0.93439 0.97798 1.04012 1.17899 0.87022 0.81686 0.79495 1.90815 1.13082 1.76485 1.60643 1.45849 1.10735 1.25395 1.53628 1.21866 0.95936 0.87320 0.95150 1.22428 0.92971 0.91659 0.91049 0.93424 1.23661 1.00280 0.97897 0.98135 1.22028 0.92189 0.95148 0.88036 1.45664 1.73556 1.07195 1.06339 1.18814 1.35042 0.96252 0.84163 0.90299 1.24771 1.01599 0.95796 0.98109 1.69827 1.50225 1.00508 1.35758 0.86197 0.78096 0.77031 0.84824 1.21512 1.21655 1.20813 1.21017 0.92855 0.98960 0.97281 0.88750 0.88501 0.88845 0.74611 0.83103 0.83697 0.76356 0.90824 0.92014 0.90133 0.92287 0.95711 0.90962 0.93631 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.32 36.00 0.37 -0.46 16 2 C 0.51 4.61 7.78 -10.99 -0.09 4.52 16 3 O -0.53 -6.77 14.52 5.55 0.08 -6.69 16 4 N -0.67 -5.80 5.34 -9.88 -0.05 -5.85 16 5 C 0.12 1.40 6.29 -83.71 -0.53 0.87 16 6 C -0.07 -0.81 8.69 -39.33 -0.34 -1.16 16 7 C -0.15 -1.76 10.01 -39.59 -0.40 -2.16 16 8 C 0.15 2.15 7.28 -38.96 -0.28 1.86 16 9 F -0.11 -1.93 15.54 2.25 0.03 -1.90 16 10 C -0.15 -2.22 5.88 -104.93 -0.62 -2.84 16 11 C 0.55 9.88 7.77 -12.39 -0.10 9.78 16 12 O -0.53 -11.26 15.33 5.30 0.08 -11.18 16 13 N -0.71 -11.89 5.28 -61.29 -0.32 -12.21 16 14 C 0.12 2.16 5.52 -4.04 -0.02 2.14 16 15 C 0.13 2.34 4.10 -72.41 -0.30 2.04 16 16 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.16 -2.83 8.03 -26.22 -0.21 -3.04 16 18 C 0.15 3.34 7.39 -8.52 -0.06 3.28 16 19 N -0.60 -14.03 3.65 -177.03 -0.65 -14.68 16 20 C -0.22 -5.51 10.55 -15.06 -0.16 -5.67 16 21 H 0.08 1.92 7.50 -52.49 -0.39 1.53 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -26.05 11.51 55.49 0.64 -25.41 16 24 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.08 -0.99 9.45 -38.98 -0.37 -1.35 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.42 2.52 8.82 -40.82 -0.36 2.16 16 33 H 0.15 1.72 6.21 -52.49 -0.33 1.39 16 34 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.40 6.18 6.40 -40.82 -0.26 5.92 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.43 8.12 -51.93 -0.42 1.00 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.80 7.12 -51.93 -0.37 1.43 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 43 H 0.14 1.53 6.40 -52.49 -0.34 1.19 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -34.40 368.68 -8.25 -42.65 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.41 Total: 6.09 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -3.19 Total: 7.58 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.38 Total: -58.15 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.16 Total: -17.87 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.03 Total: -1.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.40 -8.25 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039074842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.935 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds