Wall clock time and date at job start Tue Mar 31 2020 18:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21278 * 120.00224 * 2 1 4 4 N 1.34782 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.39548 * 120.00039 * 185.52182 * 4 2 1 6 6 C 1.39077 * 119.93403 * 24.87151 * 5 4 2 7 7 C 1.37688 * 120.10430 * 180.02562 * 6 5 4 8 8 C 1.39739 * 119.96635 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.06552 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00190 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99988 * 0.03410 * 9 8 7 12 12 C 1.46501 * 119.99981 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47275 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.73818 * 303.76169 * 13 12 11 15 15 C 1.53492 * 113.46732 * 172.94031 * 13 12 11 16 16 C 1.53499 * 83.34508 * 219.15136 * 15 13 12 17 17 N 1.47063 * 113.46755 * 74.50124 * 13 12 11 18 18 C 1.36936 * 136.06017 * 321.87262 * 17 13 12 19 19 H 1.08001 * 119.99617 * 359.97438 * 18 17 13 20 20 C 1.38810 * 120.00154 * 179.97438 * 18 17 13 21 21 N 1.31619 * 119.99908 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00185 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46955 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46863 * 119.99792 * 22 20 18 25 25 H 1.48495 * 109.47458 * 240.00243 * 22 20 18 26 26 C 1.39747 * 119.86903 * 0.02562 * 8 7 6 27 27 C 1.37875 * 119.89452 * 0.24153 * 26 8 7 28 28 F 1.35099 * 119.98032 * 179.72519 * 27 26 8 29 29 H 1.09004 * 109.46810 * 239.99850 * 1 2 3 30 30 H 1.09001 * 109.47565 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47502 * 120.00023 * 1 2 3 32 32 H 0.96996 * 120.00109 * 5.51818 * 4 2 1 33 33 H 1.08002 * 119.94617 * 0.04530 * 6 5 4 34 34 H 1.07997 * 120.02020 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99985 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.47326 * 299.99890 * 12 11 9 37 37 H 1.09005 * 109.47518 * 59.99463 * 12 11 9 38 38 H 1.08998 * 114.21016 * 332.73389 * 15 13 12 39 39 H 1.09005 * 114.20769 * 105.56862 * 15 13 12 40 40 H 1.09008 * 113.46680 * 271.29227 * 16 15 13 41 41 H 1.08999 * 113.46931 * 140.84363 * 16 15 13 42 42 H 0.97003 * 119.99553 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.05029 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5715 -1.1701 0.1158 6 6 4.2186 -0.1040 0.7312 7 6 5.5906 -0.1029 0.8474 8 6 6.3343 -1.1748 0.3467 9 6 7.8052 -1.1757 0.4695 10 8 8.4512 -2.1088 0.0331 11 7 8.4322 -0.1423 1.0657 12 6 9.8921 -0.1434 1.1881 13 6 10.3454 1.1342 1.8973 14 1 10.0005 2.0390 1.3968 15 6 11.8442 1.1507 2.2283 16 6 11.3675 1.8117 3.5291 17 7 10.0790 1.1273 3.3436 18 6 9.0735 0.6807 4.1589 19 1 8.2083 0.1948 3.7325 20 6 9.1663 0.8524 5.5332 21 7 10.2204 1.4451 6.0527 22 14 7.7943 0.2439 6.6453 23 1 6.7292 -0.3814 5.8206 24 1 8.3364 -0.7595 7.5964 25 1 7.2267 1.3880 7.4028 26 6 5.6827 -2.2454 -0.2715 27 6 4.3091 -2.2381 -0.3897 28 9 3.6778 -3.2696 -0.9920 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.6993 -2.0053 -0.0817 33 1 3.6441 0.7243 1.1190 34 1 6.0917 0.7255 1.3260 35 1 7.9169 0.6022 1.4137 36 1 10.2076 -1.0119 1.7664 37 1 10.3400 -0.1860 0.1953 38 1 12.2828 0.1622 2.3641 39 1 12.4365 1.8030 1.5865 40 1 11.2956 2.8974 3.4633 41 1 11.9135 1.4775 4.4113 42 1 10.2854 1.5648 7.0131 43 1 6.2546 -3.0751 -0.6599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039081856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:47 Heat of formation + Delta-G solvation = -25.469897 kcal Electronic energy + Delta-G solvation = -28316.288388 eV Core-core repulsion = 24085.269891 eV Total energy + Delta-G solvation = -4231.018497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.17132 -40.91739 -39.79484 -38.39610 -37.71662 -35.20572 -34.18547 -32.25104 -31.45175 -30.79918 -29.38221 -28.03838 -27.39510 -24.18800 -23.49291 -23.15508 -22.01056 -21.02865 -20.36508 -19.32693 -18.68866 -17.94447 -17.44669 -16.68652 -16.46526 -16.18712 -15.88942 -15.60755 -15.41140 -15.29044 -14.69443 -14.57417 -14.25487 -13.94734 -13.78454 -13.54097 -13.30414 -13.20358 -13.00739 -12.90785 -12.60232 -12.44353 -11.93391 -11.77708 -11.55646 -11.13393 -11.00877 -10.89715 -10.79505 -10.57806 -10.28922 -10.02378 -9.84304 -9.73733 -9.25351 -9.09281 -8.84116 -8.68196 -8.35742 -6.92462 -5.79548 -3.12268 0.49067 0.99608 2.04611 2.50817 2.88242 3.35442 3.38195 3.41872 3.44001 3.73021 3.91739 4.16578 4.40596 4.53947 4.71783 4.77356 4.83681 4.89463 5.02031 5.13692 5.18740 5.34152 5.37803 5.53944 5.59106 5.72776 5.80450 5.89226 5.89825 6.01892 6.09316 6.11149 6.30953 6.38975 6.57809 6.60666 6.69072 6.82513 6.84007 7.20607 7.37364 7.55845 7.57278 7.82280 7.94929 8.46194 9.00099 9.67657 10.60202 11.37638 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003207 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.744144 B = 8730.098381 C =10019.479370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.516 6.516 4 N -0.669 5.669 5 C 0.138 3.862 6 C -0.113 4.113 7 C -0.067 4.067 8 C -0.119 4.119 9 C 0.556 3.444 10 O -0.546 6.546 11 N -0.705 5.705 12 C 0.121 3.879 13 C 0.126 3.874 14 H 0.049 0.951 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.602 5.602 18 C -0.215 4.215 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C -0.073 4.073 27 C 0.055 3.945 28 F -0.137 7.137 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.416 0.584 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.403 0.597 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.253 0.747 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.138 -3.973 -13.587 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.391 6.391 4 N -0.314 5.314 5 C 0.041 3.959 6 C -0.133 4.133 7 C -0.087 4.087 8 C -0.123 4.123 9 C 0.342 3.658 10 O -0.426 6.426 11 N -0.355 5.355 12 C -0.003 4.003 13 C 0.018 3.982 14 H 0.066 0.934 15 C -0.200 4.200 16 C 0.026 3.974 17 N -0.328 5.328 18 C -0.342 4.342 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.737 3.263 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.093 4.093 27 C 0.033 3.967 28 F -0.116 7.116 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.252 0.748 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.239 0.761 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.517 -3.929 -13.560 20.978 hybrid contribution -1.438 -0.522 0.768 1.712 sum -16.956 -4.451 -12.792 21.701 Atomic orbital electron populations 1.21940 0.90102 1.06345 1.04809 1.21100 0.91129 0.82788 0.75002 1.90734 1.70318 1.31209 1.46821 1.43458 1.04867 1.10707 1.72330 1.17917 0.83299 0.95854 0.98822 1.21258 0.94551 0.98753 0.98777 1.21412 0.93545 0.97413 0.96323 1.19875 0.94005 0.95695 1.02692 1.17989 0.86594 0.82709 0.78505 1.90756 1.67168 1.35155 1.49486 1.45892 1.09020 1.22301 1.58260 1.21871 0.78276 1.00510 0.99671 1.22434 0.93859 0.94095 0.87772 0.93357 1.23660 0.94764 1.01419 1.00124 1.22034 0.86449 0.94057 0.94901 1.45692 1.21216 1.66615 0.99253 1.18888 0.97240 1.30958 0.87107 0.90145 1.24767 0.98032 1.00982 0.96513 1.69837 1.28433 1.47194 1.10921 0.86128 0.81198 0.77977 0.80979 1.20439 1.21690 1.21739 1.21016 0.91416 0.99264 0.97611 1.17132 0.90392 0.87213 1.01933 1.91477 1.82165 1.56546 1.81377 0.88726 0.88203 0.88908 0.74770 0.82215 0.84082 0.76092 0.90821 0.91997 0.90155 0.92293 0.95703 0.90961 0.93715 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.32 36.00 0.37 -0.33 16 2 C 0.51 4.50 7.74 -10.99 -0.08 4.41 16 3 O -0.52 -6.69 14.23 5.56 0.08 -6.61 16 4 N -0.67 -5.68 5.29 -9.81 -0.05 -5.73 16 5 C 0.14 1.60 6.44 -83.64 -0.54 1.06 16 6 C -0.11 -1.44 8.69 -39.47 -0.34 -1.78 16 7 C -0.07 -0.90 9.53 -39.22 -0.37 -1.27 16 8 C -0.12 -1.74 5.88 -104.95 -0.62 -2.35 16 9 C 0.56 9.60 7.76 -12.44 -0.10 9.50 16 10 O -0.55 -10.92 16.34 5.28 0.09 -10.83 16 11 N -0.70 -11.99 5.28 -61.32 -0.32 -12.31 16 12 C 0.12 2.16 5.52 -4.04 -0.02 2.14 16 13 C 0.13 2.38 4.10 -72.40 -0.30 2.09 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 15 C -0.16 -2.88 8.03 -26.22 -0.21 -3.09 16 16 C 0.15 3.41 7.39 -8.50 -0.06 3.35 16 17 N -0.60 -14.42 3.65 -176.99 -0.65 -15.06 16 18 C -0.21 -5.66 10.55 -15.06 -0.16 -5.82 16 19 H 0.08 2.03 7.50 -52.49 -0.39 1.64 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.92 -26.68 11.51 55.49 0.64 -26.04 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C -0.07 -0.98 9.56 -39.15 -0.37 -1.36 16 27 C 0.06 0.66 7.29 -39.32 -0.29 0.37 16 28 F -0.14 -1.52 16.80 2.25 0.04 -1.48 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.42 2.28 8.44 -40.82 -0.34 1.93 16 33 H 0.16 2.07 5.77 -52.49 -0.30 1.77 16 34 H 0.14 1.74 6.39 -52.49 -0.34 1.41 16 35 H 0.40 6.48 6.39 -40.82 -0.26 6.22 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 43 H 0.15 2.02 7.64 -52.49 -0.40 1.62 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -34.10 369.08 -8.18 -42.28 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.35 Total: 6.78 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -3.19 Total: 6.66 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.38 Total: -59.15 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.10 -8.18 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039081856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.810 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds