Wall clock time and date at job start Tue Mar 31 2020 18:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21278 * 120.00224 * 2 1 4 4 N 1.34782 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.39548 * 120.00039 * 185.52182 * 4 2 1 6 6 C 1.39077 * 119.93403 * 24.87151 * 5 4 2 7 7 C 1.37688 * 120.10430 * 180.02562 * 6 5 4 8 8 C 1.39739 * 119.96635 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.06552 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00190 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99988 * 0.03410 * 9 8 7 12 12 C 1.46501 * 119.99981 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47275 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.73818 * 303.76169 * 13 12 11 15 15 C 1.53492 * 113.46732 * 172.94031 * 13 12 11 16 16 C 1.53499 * 83.34508 * 219.15136 * 15 13 12 17 17 N 1.47063 * 113.46755 * 74.50124 * 13 12 11 18 18 C 1.36936 * 136.06017 * 321.87262 * 17 13 12 19 19 H 1.08001 * 119.99617 * 359.97438 * 18 17 13 20 20 C 1.38810 * 120.00154 * 179.97438 * 18 17 13 21 21 N 1.31619 * 119.99908 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00185 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46955 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46863 * 119.99792 * 22 20 18 25 25 H 1.48495 * 109.47458 * 240.00243 * 22 20 18 26 26 C 1.39747 * 119.86903 * 0.02562 * 8 7 6 27 27 C 1.37875 * 119.89452 * 0.24153 * 26 8 7 28 28 F 1.35099 * 119.98032 * 179.72519 * 27 26 8 29 29 H 1.09004 * 109.46810 * 239.99850 * 1 2 3 30 30 H 1.09001 * 109.47565 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47502 * 120.00023 * 1 2 3 32 32 H 0.96996 * 120.00109 * 5.51818 * 4 2 1 33 33 H 1.08002 * 119.94617 * 0.04530 * 6 5 4 34 34 H 1.07997 * 120.02020 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99985 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.47326 * 299.99890 * 12 11 9 37 37 H 1.09005 * 109.47518 * 59.99463 * 12 11 9 38 38 H 1.08998 * 114.21016 * 332.73389 * 15 13 12 39 39 H 1.09005 * 114.20769 * 105.56862 * 15 13 12 40 40 H 1.09008 * 113.46680 * 271.29227 * 16 15 13 41 41 H 1.08999 * 113.46931 * 140.84363 * 16 15 13 42 42 H 0.97003 * 119.99553 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.05029 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5715 -1.1701 0.1158 6 6 4.2186 -0.1040 0.7312 7 6 5.5906 -0.1029 0.8474 8 6 6.3343 -1.1748 0.3467 9 6 7.8052 -1.1757 0.4695 10 8 8.4512 -2.1088 0.0331 11 7 8.4322 -0.1423 1.0657 12 6 9.8921 -0.1434 1.1881 13 6 10.3454 1.1342 1.8973 14 1 10.0005 2.0390 1.3968 15 6 11.8442 1.1507 2.2283 16 6 11.3675 1.8117 3.5291 17 7 10.0790 1.1273 3.3436 18 6 9.0735 0.6807 4.1589 19 1 8.2083 0.1948 3.7325 20 6 9.1663 0.8524 5.5332 21 7 10.2204 1.4451 6.0527 22 14 7.7943 0.2439 6.6453 23 1 6.7292 -0.3814 5.8206 24 1 8.3364 -0.7595 7.5964 25 1 7.2267 1.3880 7.4028 26 6 5.6827 -2.2454 -0.2715 27 6 4.3091 -2.2381 -0.3897 28 9 3.6778 -3.2696 -0.9920 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.6993 -2.0053 -0.0817 33 1 3.6441 0.7243 1.1190 34 1 6.0917 0.7255 1.3260 35 1 7.9169 0.6022 1.4137 36 1 10.2076 -1.0119 1.7664 37 1 10.3400 -0.1860 0.1953 38 1 12.2828 0.1622 2.3641 39 1 12.4365 1.8030 1.5865 40 1 11.2956 2.8974 3.4633 41 1 11.9135 1.4775 4.4113 42 1 10.2854 1.5648 7.0131 43 1 6.2546 -3.0751 -0.6599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039081856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:47 Heat of formation + Delta-G solvation = -49.007077 kcal Electronic energy + Delta-G solvation = -28317.309037 eV Core-core repulsion = 24085.269891 eV Total energy + Delta-G solvation = -4232.039145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.09868 -41.80021 -41.02302 -39.88990 -38.92034 -36.08886 -35.62793 -34.23769 -32.24872 -31.82649 -30.25593 -29.88091 -28.73670 -25.38502 -25.27031 -24.16489 -23.48136 -21.97926 -21.52000 -20.98210 -19.74366 -19.08066 -18.37935 -18.24410 -17.48949 -17.26912 -17.11464 -16.83790 -16.64324 -16.36996 -16.18432 -15.80583 -15.58376 -15.37235 -14.89895 -14.81333 -14.61735 -14.45473 -13.81371 -13.75878 -13.56888 -13.37549 -13.30859 -13.05731 -12.98131 -12.81563 -12.68927 -12.56478 -12.28823 -11.85122 -11.82489 -11.61412 -11.37844 -11.05270 -10.88222 -10.80011 -10.11058 -10.08570 -9.33240 -8.87865 -7.86463 -5.17925 -0.54901 -0.01806 1.27381 1.44036 1.45393 1.53890 1.74205 1.83363 2.08816 2.47591 2.58766 2.91543 3.35529 3.41267 3.47033 3.61887 3.71010 3.85888 3.95092 3.99845 4.12882 4.27623 4.36212 4.47224 4.59093 4.63238 4.66148 4.72301 4.83219 4.87549 4.90885 5.01605 5.07170 5.07597 5.11130 5.14874 5.34305 5.40335 5.60659 5.63986 5.75846 5.98478 6.18927 6.47462 6.91045 6.95136 7.11447 7.65557 8.65130 9.31364 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003207 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.744144 B = 8730.098381 C =10019.479370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.561 6.561 4 N -0.660 5.660 5 C 0.148 3.852 6 C -0.121 4.121 7 C -0.063 4.063 8 C -0.137 4.137 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.704 5.704 12 C 0.129 3.871 13 C 0.132 3.868 14 H 0.071 0.929 15 C -0.134 4.134 16 C 0.142 3.858 17 N -0.629 5.629 18 C -0.205 4.205 19 H 0.088 0.912 20 C -0.070 4.070 21 N -0.953 5.953 22 Si 0.964 3.036 23 H -0.264 1.264 24 H -0.299 1.299 25 H -0.293 1.293 26 C -0.074 4.074 27 C 0.058 3.942 28 F -0.129 7.129 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.432 0.568 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.408 0.592 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.245 0.755 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.477 -4.417 -15.288 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.299 3.701 3 O -0.439 6.439 4 N -0.305 5.305 5 C 0.050 3.950 6 C -0.142 4.142 7 C -0.083 4.083 8 C -0.141 4.141 9 C 0.344 3.656 10 O -0.461 6.461 11 N -0.354 5.354 12 C 0.004 3.996 13 C 0.026 3.974 14 H 0.088 0.912 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.356 5.356 18 C -0.333 4.333 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.603 5.603 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.226 1.226 25 H -0.221 1.221 26 C -0.094 4.094 27 C 0.037 3.963 28 F -0.108 7.108 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.272 0.728 33 H 0.176 0.824 34 H 0.164 0.836 35 H 0.244 0.756 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.905 -4.395 -15.306 23.962 hybrid contribution -0.779 -0.388 1.193 1.476 sum -18.684 -4.783 -14.113 23.899 Atomic orbital electron populations 1.21995 0.85983 1.07054 1.07152 1.22053 0.92930 0.81854 0.73299 1.90720 1.71549 1.32782 1.48863 1.43565 1.03580 1.11829 1.71560 1.17995 0.84911 0.94909 0.97162 1.21283 0.94293 0.99209 0.99381 1.21448 0.93847 0.97082 0.95894 1.19648 0.92475 0.97019 1.04935 1.18327 0.87614 0.81994 0.77615 1.90731 1.68114 1.36248 1.50961 1.45868 1.08749 1.22552 1.58216 1.21690 0.79025 0.98694 1.00147 1.22581 0.94444 0.95138 0.85222 0.91210 1.23482 0.94713 1.01587 0.97478 1.22052 0.86250 0.94098 0.95949 1.46015 1.21107 1.66665 1.01770 1.19249 0.97501 1.29064 0.87532 0.89415 1.25501 1.00180 1.02485 0.98095 1.70014 1.30332 1.49550 1.10406 0.85206 0.79207 0.77046 0.79174 1.18866 1.22647 1.22070 1.21043 0.92152 0.98887 0.97349 1.16982 0.89874 0.87547 1.01945 1.91499 1.81875 1.56190 1.81195 0.86362 0.88383 0.86272 0.72820 0.82380 0.83575 0.75554 0.93539 0.89842 0.90179 0.88170 0.95937 0.94597 0.94631 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 10.32 71.23 0.74 -0.04 16 2 C 0.51 7.77 7.74 87.65 0.68 8.45 16 3 O -0.56 -13.92 14.23 -3.02 -0.04 -13.96 16 4 N -0.66 -9.54 5.29 -303.33 -1.60 -11.14 16 5 C 0.15 3.18 6.44 38.37 0.25 3.43 16 6 C -0.12 -2.96 8.69 22.34 0.19 -2.77 16 7 C -0.06 -1.63 9.53 22.50 0.21 -1.42 16 8 C -0.14 -3.93 5.88 -20.08 -0.12 -4.04 16 9 C 0.56 19.02 7.76 86.71 0.67 19.69 16 10 O -0.58 -23.11 16.34 -4.01 -0.07 -23.18 16 11 N -0.70 -23.35 5.28 -466.19 -2.46 -25.81 16 12 C 0.13 4.45 5.52 86.38 0.48 4.93 16 13 C 0.13 4.77 4.10 41.79 0.17 4.94 16 14 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.13 -4.53 8.03 30.93 0.25 -4.29 16 16 C 0.14 6.44 7.39 83.18 0.62 7.06 16 17 N -0.63 -30.05 3.65 -713.88 -2.61 -32.66 16 18 C -0.21 -10.85 10.55 84.03 0.89 -9.96 16 19 H 0.09 4.39 7.50 -2.91 -0.02 4.37 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.95 -57.15 11.51 21.65 0.25 -56.90 16 22 Si 0.96 45.51 29.55 68.60 2.03 47.54 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 26 C -0.07 -1.94 9.56 22.55 0.22 -1.72 16 27 C 0.06 1.31 7.29 22.44 0.16 1.47 16 28 F -0.13 -2.58 16.80 44.97 0.76 -1.82 16 29 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.10 0.58 8.12 -2.39 -0.02 0.56 16 31 H 0.12 -0.01 8.14 -2.39 -0.02 -0.02 16 32 H 0.43 3.33 8.44 -92.71 -0.78 2.55 16 33 H 0.16 3.99 5.77 -2.91 -0.02 3.97 16 34 H 0.15 3.51 6.39 -2.91 -0.02 3.49 16 35 H 0.41 12.70 6.39 -92.71 -0.59 12.11 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.08 2.74 8.12 -2.39 -0.02 2.72 16 39 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.04 1.87 7.12 -2.39 -0.02 1.86 16 42 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.15 3.94 7.64 -2.91 -0.02 3.92 16 Total: -1.00 -75.75 369.08 1.82 -73.93 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.30 Total: 21.71 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 5.87 Total: 22.29 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.42 Total: -126.51 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.11 Total: -37.14 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.76 Total: -1.82 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.75 1.82 -73.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039081856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.920 kcal (2) G-P(sol) polarization free energy of solvation -75.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds