Wall clock time and date at job start Tue Mar 31 2020 18:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21276 * 119.99774 * 2 1 4 4 N 1.34777 * 120.00013 * 180.02562 * 2 1 3 5 5 C 1.39297 * 120.00063 * 183.98491 * 4 2 1 6 6 C 1.38716 * 120.14559 * 325.49981 * 5 4 2 7 7 C 1.38326 * 120.04104 * 179.76891 * 6 5 4 8 8 F 1.35106 * 119.82087 * 180.25363 * 7 6 5 9 9 C 1.38858 * 120.34887 * 0.51125 * 7 6 5 10 10 C 1.37681 * 120.30330 * 359.74454 * 9 7 6 11 11 C 1.39755 * 119.95068 * 359.97438 * 10 9 7 12 12 C 1.47398 * 120.17560 * 179.97438 * 11 10 9 13 13 O 1.21599 * 120.00107 * 127.27935 * 12 11 10 14 14 N 1.34782 * 119.99879 * 307.27849 * 12 11 10 15 15 C 1.46504 * 119.99757 * 354.15758 * 14 12 11 16 16 C 1.46499 * 120.00142 * 174.15706 * 14 12 11 17 17 C 1.53939 * 113.74439 * 218.74204 * 16 14 12 18 18 N 1.47815 * 86.03749 * 222.08589 * 17 16 14 19 19 C 1.36936 * 134.45219 * 204.64435 * 18 17 16 20 20 H 1.08007 * 119.99583 * 184.81994 * 19 18 17 21 21 C 1.38812 * 120.00379 * 4.82271 * 19 18 17 22 22 N 1.31611 * 119.99910 * 5.06614 * 21 19 18 23 23 Si 1.86798 * 119.99771 * 185.06059 * 21 19 18 24 24 H 1.48494 * 109.46945 * 95.00180 * 23 21 19 25 25 H 1.48504 * 109.47001 * 215.00053 * 23 21 19 26 26 H 1.48499 * 109.47395 * 334.99646 * 23 21 19 27 27 C 1.47578 * 91.04851 * 24.54918 * 18 17 16 28 28 H 1.09006 * 109.46467 * 239.99452 * 1 2 3 29 29 H 1.08990 * 109.47146 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47087 * 120.00079 * 1 2 3 31 31 H 0.96999 * 120.00220 * 4.25010 * 4 2 1 32 32 H 1.07998 * 119.98344 * 0.02562 * 6 5 4 33 33 H 1.08005 * 119.84689 * 179.72326 * 9 7 6 34 34 H 1.08005 * 120.02448 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.46831 * 94.69080 * 15 14 12 36 36 H 1.08999 * 109.47091 * 214.68403 * 15 14 12 37 37 H 1.08993 * 109.47508 * 334.68859 * 15 14 12 38 38 H 1.09001 * 112.93855 * 350.33786 * 16 14 12 39 39 H 1.09002 * 113.76982 * 336.35051 * 17 16 14 40 40 H 1.09001 * 113.76825 * 107.74421 * 17 16 14 41 41 H 0.96999 * 120.00588 * 180.02562 * 22 21 19 42 42 H 1.09001 * 113.76596 * 221.15329 * 27 18 17 43 43 H 1.08999 * 113.76869 * 89.76022 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5714 -1.1687 0.0833 6 6 4.3066 -0.1576 -0.5178 7 6 5.6870 -0.1586 -0.4291 8 9 6.3984 0.8312 -1.0118 9 6 6.3456 -1.1744 0.2511 10 6 5.6303 -2.1878 0.8485 11 6 4.2349 -2.1961 0.7717 12 6 3.4642 -3.2789 1.4090 13 8 2.5619 -3.0112 2.1790 14 7 3.7596 -4.5658 1.1382 15 6 4.7583 -4.8886 0.1161 16 6 3.0820 -5.6417 1.8659 17 6 4.0002 -6.8263 2.2172 18 7 2.8673 -7.6891 1.8207 19 6 2.4776 -8.9641 2.1334 20 1 1.6257 -9.4052 1.6374 21 6 3.1775 -9.6894 3.0878 22 7 4.1523 -9.1191 3.7635 23 14 2.7354 -11.4750 3.4132 24 1 3.6179 -12.3578 2.6089 25 1 2.9176 -11.7749 4.8562 26 1 1.3195 -11.7116 3.0335 27 6 2.3242 -6.6244 0.9551 28 1 -0.3632 -0.5140 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6980 -2.0061 -0.0632 32 1 3.8008 0.6332 -1.0518 33 1 7.4240 -1.1696 0.3115 34 1 6.1472 -2.9759 1.3760 35 1 5.7296 -5.0318 0.5896 36 1 4.4673 -5.8036 -0.4000 37 1 4.8210 -4.0709 -0.6018 38 1 2.4919 -5.2791 2.7076 39 1 4.8698 -6.9163 1.5662 40 1 4.2517 -6.8883 3.2760 41 1 4.6416 -9.6260 4.4302 42 1 1.2399 -6.5256 1.0080 43 1 2.7003 -6.6550 -0.0675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042848890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:43 Heat of formation + Delta-G solvation = -17.613447 kcal Electronic energy + Delta-G solvation = -28864.977138 eV Core-core repulsion = 24634.299322 eV Total energy + Delta-G solvation = -4230.677815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.13914 -41.14443 -39.83697 -38.42910 -37.41676 -35.17468 -34.48805 -32.15057 -31.33274 -30.84440 -29.00726 -27.74726 -26.77963 -24.92129 -24.36196 -23.67103 -22.63302 -20.90420 -20.31890 -18.76568 -18.47918 -17.49982 -17.45726 -16.93160 -16.53457 -16.16721 -16.07775 -15.80232 -15.49287 -15.07790 -14.82902 -14.58542 -14.14585 -13.95405 -13.87933 -13.56746 -13.19026 -12.98435 -12.92128 -12.67530 -12.54235 -12.47021 -12.15556 -11.88808 -11.77229 -11.60538 -11.45636 -10.93865 -10.77237 -10.72054 -10.37063 -10.18248 -10.12314 -9.75579 -9.65791 -9.05163 -8.89538 -8.54058 -8.28816 -6.98707 -5.85607 -3.20572 0.55801 0.89383 2.23072 2.60161 2.70385 3.07634 3.34124 3.36920 3.39825 3.41576 3.95540 4.35123 4.37083 4.45273 4.55239 4.71947 4.90720 5.01337 5.06092 5.08543 5.09700 5.22532 5.35619 5.41356 5.50553 5.58750 5.65752 5.67944 5.78072 5.85246 5.89015 5.99343 6.05467 6.07023 6.32204 6.45931 6.57214 6.63867 6.98806 7.09792 7.23689 7.43602 7.58495 7.73219 7.88591 8.21451 8.93924 9.60894 10.46374 11.29995 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.002775 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.061394 B =10086.476777 C =11227.675482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.517 3.483 3 O -0.527 6.527 4 N -0.664 5.664 5 C 0.219 3.781 6 C -0.167 4.167 7 C 0.134 3.866 8 F -0.134 7.134 9 C -0.173 4.173 10 C -0.038 4.038 11 C -0.161 4.161 12 C 0.554 3.446 13 O -0.533 6.533 14 N -0.590 5.590 15 C 0.074 3.926 16 C 0.091 3.909 17 C 0.149 3.851 18 N -0.604 5.604 19 C -0.225 4.225 20 H 0.082 0.918 21 C -0.005 4.005 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.109 3.891 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.418 0.582 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.117 0.883 39 H 0.030 0.970 40 H 0.085 0.915 41 H 0.255 0.745 42 H 0.047 0.953 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 16.741 -10.920 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.306 3.694 3 O -0.402 6.402 4 N -0.309 5.309 5 C 0.122 3.878 6 C -0.188 4.188 7 C 0.114 3.886 8 F -0.113 7.113 9 C -0.193 4.193 10 C -0.057 4.057 11 C -0.167 4.167 12 C 0.341 3.659 13 O -0.411 6.411 14 N -0.322 5.322 15 C -0.069 4.069 16 C -0.012 4.012 17 C 0.023 3.977 18 N -0.331 5.331 19 C -0.352 4.352 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.564 5.564 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C -0.018 4.018 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.256 0.744 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.135 0.865 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.277 17.344 -10.334 20.191 hybrid contribution -0.056 -1.368 0.005 1.369 sum 0.220 15.975 -10.328 19.025 Atomic orbital electron populations 1.21935 0.90122 1.06064 1.05130 1.21074 0.91181 0.82695 0.74406 1.90722 1.70541 1.31210 1.47735 1.43449 1.04549 1.10832 1.72037 1.17196 0.83117 0.93824 0.93655 1.21114 0.92015 1.01800 1.03916 1.17633 0.89089 0.86606 0.95288 1.91521 1.78177 1.59609 1.81950 1.21042 1.01327 0.95028 1.01858 1.21009 0.91455 0.97469 0.95751 1.19900 0.94481 0.98620 1.03696 1.18129 0.83344 0.82518 0.81864 1.90806 1.30765 1.83288 1.36248 1.48069 1.40532 1.05320 1.38264 1.21891 0.91885 1.02145 0.90953 1.24131 0.96835 0.84488 0.95716 1.22788 0.90214 0.83384 1.01350 1.45631 1.25330 1.11984 1.50153 1.18986 1.11401 0.87345 1.17515 0.90070 1.24803 0.98487 0.98756 0.98181 1.69801 1.24376 1.35619 1.26585 0.86070 0.77865 0.84297 0.77341 1.21584 1.21588 1.20480 1.22970 0.97379 0.87330 0.94140 0.88436 0.88411 0.88873 0.74428 0.82636 0.83947 0.83668 0.92132 0.90328 0.91315 0.86531 0.95204 0.89670 0.93506 0.93471 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.32 36.01 0.37 -0.78 16 2 C 0.52 5.62 7.78 -10.98 -0.09 5.54 16 3 O -0.53 -7.48 14.49 5.56 0.08 -7.40 16 4 N -0.66 -7.23 4.72 -9.70 -0.05 -7.28 16 5 C 0.22 2.67 6.30 -83.50 -0.53 2.14 16 6 C -0.17 -2.01 8.66 -39.37 -0.34 -2.35 16 7 C 0.13 1.49 7.30 -39.32 -0.29 1.20 16 8 F -0.13 -1.53 17.26 2.25 0.04 -1.49 16 9 C -0.17 -1.64 10.00 -39.56 -0.40 -2.04 16 10 C -0.04 -0.39 8.09 -39.22 -0.32 -0.70 16 11 C -0.16 -1.98 4.53 -104.81 -0.47 -2.46 16 12 C 0.55 8.17 6.43 -12.53 -0.08 8.09 16 13 O -0.53 -9.55 15.97 5.28 0.08 -9.47 16 14 N -0.59 -8.57 3.09 -177.03 -0.55 -9.11 16 15 C 0.07 0.85 7.77 59.85 0.47 1.31 16 16 C 0.09 1.68 4.38 -70.15 -0.31 1.37 16 17 C 0.15 3.27 7.22 -2.84 -0.02 3.25 16 18 N -0.60 -14.76 3.70 -177.89 -0.66 -15.42 16 19 C -0.23 -6.09 10.69 -15.06 -0.16 -6.25 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 22 N -0.92 -26.27 11.29 55.49 0.63 -25.64 16 23 Si 0.91 21.50 29.56 -169.99 -5.02 16.48 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 C 0.11 2.09 8.48 -2.97 -0.03 2.07 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.61 8.12 -51.93 -0.42 0.18 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.42 4.00 8.00 -40.82 -0.33 3.67 16 32 H 0.16 1.96 6.19 -52.49 -0.32 1.64 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.15 1.29 7.37 -52.48 -0.39 0.91 16 35 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 36 H 0.08 0.95 6.56 -51.93 -0.34 0.61 16 37 H 0.07 0.64 6.40 -51.93 -0.33 0.30 16 38 H 0.12 2.37 7.26 -51.93 -0.38 1.99 16 39 H 0.03 0.63 6.87 -51.93 -0.36 0.28 16 40 H 0.09 2.15 6.87 -51.93 -0.36 1.79 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.64 6.79 -51.93 -0.35 0.28 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -33.51 361.56 -7.49 -40.99 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.21 Total: 2.74 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -2.28 Total: 10.15 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.62 Total: -57.45 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.16 Total: -16.86 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.51 -7.49 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042848890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.380 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds