Wall clock time and date at job start Tue Mar 31 2020 18:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21276 * 119.99774 * 2 1 4 4 N 1.34777 * 120.00013 * 180.02562 * 2 1 3 5 5 C 1.39297 * 120.00063 * 183.98491 * 4 2 1 6 6 C 1.38716 * 120.14559 * 325.49981 * 5 4 2 7 7 C 1.38326 * 120.04104 * 179.76891 * 6 5 4 8 8 F 1.35106 * 119.82087 * 180.25363 * 7 6 5 9 9 C 1.38858 * 120.34887 * 0.51125 * 7 6 5 10 10 C 1.37681 * 120.30330 * 359.74454 * 9 7 6 11 11 C 1.39755 * 119.95068 * 359.97438 * 10 9 7 12 12 C 1.47398 * 120.17560 * 179.97438 * 11 10 9 13 13 O 1.21599 * 120.00107 * 127.27935 * 12 11 10 14 14 N 1.34782 * 119.99879 * 307.27849 * 12 11 10 15 15 C 1.46504 * 119.99757 * 354.15758 * 14 12 11 16 16 C 1.46499 * 120.00142 * 174.15706 * 14 12 11 17 17 C 1.53939 * 113.74439 * 218.74204 * 16 14 12 18 18 N 1.47815 * 86.03749 * 222.08589 * 17 16 14 19 19 C 1.36936 * 134.45219 * 204.64435 * 18 17 16 20 20 H 1.08007 * 119.99583 * 184.81994 * 19 18 17 21 21 C 1.38812 * 120.00379 * 4.82271 * 19 18 17 22 22 N 1.31611 * 119.99910 * 5.06614 * 21 19 18 23 23 Si 1.86798 * 119.99771 * 185.06059 * 21 19 18 24 24 H 1.48494 * 109.46945 * 95.00180 * 23 21 19 25 25 H 1.48504 * 109.47001 * 215.00053 * 23 21 19 26 26 H 1.48499 * 109.47395 * 334.99646 * 23 21 19 27 27 C 1.47578 * 91.04851 * 24.54918 * 18 17 16 28 28 H 1.09006 * 109.46467 * 239.99452 * 1 2 3 29 29 H 1.08990 * 109.47146 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47087 * 120.00079 * 1 2 3 31 31 H 0.96999 * 120.00220 * 4.25010 * 4 2 1 32 32 H 1.07998 * 119.98344 * 0.02562 * 6 5 4 33 33 H 1.08005 * 119.84689 * 179.72326 * 9 7 6 34 34 H 1.08005 * 120.02448 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.46831 * 94.69080 * 15 14 12 36 36 H 1.08999 * 109.47091 * 214.68403 * 15 14 12 37 37 H 1.08993 * 109.47508 * 334.68859 * 15 14 12 38 38 H 1.09001 * 112.93855 * 350.33786 * 16 14 12 39 39 H 1.09002 * 113.76982 * 336.35051 * 17 16 14 40 40 H 1.09001 * 113.76825 * 107.74421 * 17 16 14 41 41 H 0.96999 * 120.00588 * 180.02562 * 22 21 19 42 42 H 1.09001 * 113.76596 * 221.15329 * 27 18 17 43 43 H 1.08999 * 113.76869 * 89.76022 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5714 -1.1687 0.0833 6 6 4.3066 -0.1576 -0.5178 7 6 5.6870 -0.1586 -0.4291 8 9 6.3984 0.8312 -1.0118 9 6 6.3456 -1.1744 0.2511 10 6 5.6303 -2.1878 0.8485 11 6 4.2349 -2.1961 0.7717 12 6 3.4642 -3.2789 1.4090 13 8 2.5619 -3.0112 2.1790 14 7 3.7596 -4.5658 1.1382 15 6 4.7583 -4.8886 0.1161 16 6 3.0820 -5.6417 1.8659 17 6 4.0002 -6.8263 2.2172 18 7 2.8673 -7.6891 1.8207 19 6 2.4776 -8.9641 2.1334 20 1 1.6257 -9.4052 1.6374 21 6 3.1775 -9.6894 3.0878 22 7 4.1523 -9.1191 3.7635 23 14 2.7354 -11.4750 3.4132 24 1 3.6179 -12.3578 2.6089 25 1 2.9176 -11.7749 4.8562 26 1 1.3195 -11.7116 3.0335 27 6 2.3242 -6.6244 0.9551 28 1 -0.3632 -0.5140 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6980 -2.0061 -0.0632 32 1 3.8008 0.6332 -1.0518 33 1 7.4240 -1.1696 0.3115 34 1 6.1472 -2.9759 1.3760 35 1 5.7296 -5.0318 0.5896 36 1 4.4673 -5.8036 -0.4000 37 1 4.8210 -4.0709 -0.6018 38 1 2.4919 -5.2791 2.7076 39 1 4.8698 -6.9163 1.5662 40 1 4.2517 -6.8883 3.2760 41 1 4.6416 -9.6260 4.4302 42 1 1.2399 -6.5256 1.0080 43 1 2.7003 -6.6550 -0.0675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042848890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:42 Heat of formation + Delta-G solvation = -39.584389 kcal Electronic energy + Delta-G solvation = -28865.929869 eV Core-core repulsion = 24634.299322 eV Total energy + Delta-G solvation = -4231.630547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.02338 -42.11551 -40.99442 -39.63082 -38.69923 -36.20000 -35.70953 -34.03414 -32.15579 -31.81334 -29.81892 -29.41778 -27.91970 -26.59428 -25.72492 -24.56580 -23.97896 -21.74816 -21.64439 -20.14159 -19.40247 -18.87959 -18.47539 -18.34887 -17.66366 -17.19282 -17.06156 -16.85845 -16.68109 -16.35679 -16.08029 -15.78199 -15.58562 -15.12347 -14.83453 -14.63155 -14.37079 -14.01413 -13.88773 -13.62077 -13.56856 -13.43272 -13.24971 -13.22896 -13.13595 -13.02525 -12.80043 -12.59431 -12.52719 -12.07625 -11.92758 -11.59012 -11.53811 -11.07083 -11.00260 -10.87369 -9.95930 -9.60000 -9.39824 -8.92434 -7.90355 -5.25883 -0.35695 0.04586 1.40868 1.47797 1.48668 1.49085 1.57987 1.86405 1.91846 2.45332 2.49577 3.09057 3.26226 3.36643 3.49648 3.58722 3.75252 3.83749 3.96258 4.11595 4.22549 4.25417 4.35906 4.43519 4.46433 4.58959 4.65694 4.76005 4.78327 4.81842 4.88567 4.97888 5.02421 5.04187 5.08001 5.20004 5.22811 5.26816 5.50646 5.67487 5.73411 5.93200 6.17765 6.37920 6.90337 6.91193 7.02386 7.59432 8.52248 9.24760 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.002775 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.061394 B =10086.476777 C =11227.675482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.566 6.566 4 N -0.663 5.663 5 C 0.211 3.789 6 C -0.177 4.177 7 C 0.132 3.868 8 F -0.137 7.137 9 C -0.158 4.158 10 C -0.030 4.030 11 C -0.170 4.170 12 C 0.561 3.439 13 O -0.569 6.569 14 N -0.586 5.586 15 C 0.070 3.930 16 C 0.119 3.881 17 C 0.151 3.849 18 N -0.636 5.636 19 C -0.234 4.234 20 H 0.085 0.915 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.268 1.268 27 C 0.116 3.884 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.424 0.576 32 H 0.145 0.855 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.249 0.751 42 H 0.052 0.948 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 16.830 -12.376 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.302 3.698 3 O -0.444 6.444 4 N -0.307 5.307 5 C 0.113 3.887 6 C -0.198 4.198 7 C 0.111 3.889 8 F -0.115 7.115 9 C -0.178 4.178 10 C -0.049 4.049 11 C -0.176 4.176 12 C 0.349 3.651 13 O -0.449 6.449 14 N -0.317 5.317 15 C -0.072 4.072 16 C 0.014 3.986 17 C 0.025 3.975 18 N -0.363 5.363 19 C -0.362 4.362 20 H 0.103 0.897 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.192 1.192 27 C -0.010 4.010 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.262 0.738 32 H 0.163 0.837 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.563 17.442 -11.841 21.089 hybrid contribution -0.127 -1.300 0.403 1.367 sum 0.436 16.142 -11.438 19.789 Atomic orbital electron populations 1.21980 0.86820 1.06942 1.06699 1.21864 0.92749 0.81994 0.73171 1.90702 1.71625 1.32444 1.49641 1.43542 1.04321 1.11231 1.71642 1.17313 0.83760 0.93793 0.93799 1.21067 0.92610 1.01673 1.04449 1.17799 0.88831 0.86910 0.95316 1.91517 1.78118 1.59850 1.82033 1.21283 1.02699 0.93602 1.00177 1.21216 0.90499 0.97982 0.95183 1.19707 0.95171 0.98010 1.04746 1.18396 0.82812 0.82730 0.81128 1.90792 1.32482 1.83789 1.37844 1.47930 1.40870 1.04439 1.38420 1.22120 0.91380 1.03068 0.90618 1.23342 0.95343 0.84697 0.95193 1.22672 0.90742 0.84827 0.99255 1.45942 1.26681 1.12140 1.51558 1.19355 1.11206 0.88630 1.17019 0.89727 1.25604 0.98946 1.02587 0.98516 1.69987 1.25639 1.36740 1.27342 0.85067 0.78092 0.79700 0.76507 1.21333 1.22294 1.19218 1.23086 0.97745 0.85426 0.94713 0.87713 0.87942 0.86173 0.73779 0.83737 0.80947 0.81919 0.90824 0.90682 0.88627 0.88778 0.94044 0.93541 0.94192 0.92991 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.32 71.24 0.74 -1.23 16 2 C 0.51 10.88 7.78 87.66 0.68 11.56 16 3 O -0.57 -16.22 14.49 -3.02 -0.04 -16.27 16 4 N -0.66 -13.96 4.72 -302.98 -1.43 -15.39 16 5 C 0.21 4.91 6.30 38.58 0.24 5.16 16 6 C -0.18 -4.10 8.66 22.41 0.19 -3.91 16 7 C 0.13 2.67 7.30 22.44 0.16 2.84 16 8 F -0.14 -2.91 17.26 44.97 0.78 -2.13 16 9 C -0.16 -2.51 10.00 22.29 0.22 -2.28 16 10 C -0.03 -0.53 8.09 22.50 0.18 -0.34 16 11 C -0.17 -3.89 4.53 -19.99 -0.09 -3.98 16 12 C 0.56 15.82 6.43 86.65 0.56 16.38 16 13 O -0.57 -20.21 15.97 -4.03 -0.06 -20.28 16 14 N -0.59 -16.06 3.09 -832.26 -2.57 -18.64 16 15 C 0.07 1.40 7.77 127.77 0.99 2.39 16 16 C 0.12 4.31 4.38 46.75 0.20 4.52 16 17 C 0.15 6.67 7.22 86.44 0.62 7.30 16 18 N -0.64 -30.99 3.70 -716.71 -2.65 -33.64 16 19 C -0.23 -12.65 10.69 84.03 0.90 -11.75 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 21 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 22 N -0.95 -55.44 11.29 21.65 0.24 -55.19 16 23 Si 0.98 44.42 29.56 68.60 2.03 46.45 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.12 4.32 8.48 86.49 0.73 5.05 16 28 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.10 1.14 8.12 -2.39 -0.02 1.12 16 30 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.42 7.71 8.00 -92.71 -0.74 6.96 16 32 H 0.14 3.68 6.19 -2.91 -0.02 3.67 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.16 2.31 7.37 -2.91 -0.02 2.29 16 35 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 36 H 0.07 1.60 6.56 -2.39 -0.02 1.58 16 37 H 0.10 1.43 6.40 -2.39 -0.02 1.42 16 38 H 0.09 3.89 7.26 -2.39 -0.02 3.87 16 39 H 0.04 1.73 6.87 -2.39 -0.02 1.71 16 40 H 0.05 2.42 6.87 -2.39 -0.02 2.40 16 41 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 2.04 6.79 -2.39 -0.02 2.03 16 Total: -1.00 -74.08 361.56 3.42 -70.65 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.33 Total: 15.77 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.81 Total: 28.67 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.41 Total: -122.86 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.11 Total: -36.55 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -74.08 3.42 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042848890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.066 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds