Wall clock time and date at job start Tue Mar 31 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21282 * 120.00213 * 2 1 4 4 N 1.34775 * 120.00033 * 180.02562 * 2 1 3 5 5 C 1.39553 * 119.99826 * 185.24905 * 4 2 1 6 6 C 1.39064 * 119.93604 * 21.01803 * 5 4 2 7 7 C 1.37696 * 120.10798 * 179.97438 * 6 5 4 8 8 C 1.39741 * 119.96160 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.06362 * 179.97438 * 8 7 6 10 10 O 1.21592 * 120.00377 * 223.38201 * 9 8 7 11 11 N 1.34784 * 120.00037 * 43.38361 * 9 8 7 12 12 C 1.46502 * 119.99691 * 355.64624 * 11 9 8 13 13 C 1.46494 * 120.00133 * 175.64137 * 11 9 8 14 14 C 1.53495 * 114.20477 * 120.00154 * 13 11 9 15 15 N 1.47063 * 87.98435 * 87.71976 * 14 13 11 16 16 C 1.36943 * 136.05741 * 207.08800 * 15 14 13 17 17 H 1.07996 * 119.99914 * 8.31168 * 16 15 14 18 18 C 1.38810 * 119.99758 * 188.31526 * 16 15 14 19 19 N 1.31624 * 119.99396 * 193.79985 * 18 16 15 20 20 Si 1.86793 * 120.00374 * 13.79586 * 18 16 15 21 21 H 1.48497 * 109.47431 * 269.99954 * 20 18 16 22 22 H 1.48501 * 109.47281 * 30.00475 * 20 18 16 23 23 H 1.48500 * 109.47122 * 150.00033 * 20 18 16 24 24 C 1.47061 * 87.88827 * 27.34040 * 15 14 13 25 25 C 1.39743 * 119.86897 * 0.26293 * 8 7 6 26 26 C 1.37868 * 119.89929 * 359.46058 * 25 8 7 27 27 F 1.35099 * 119.98737 * 180.25602 * 26 25 8 28 28 H 1.09002 * 109.47093 * 239.99650 * 1 2 3 29 29 H 1.08997 * 109.46893 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46710 * 119.99597 * 1 2 3 31 31 H 0.96994 * 120.00118 * 5.25504 * 4 2 1 32 32 H 1.08006 * 119.95043 * 359.97192 * 6 5 4 33 33 H 1.07994 * 120.01992 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46797 * 273.93973 * 12 11 9 35 35 H 1.09000 * 109.46809 * 33.94276 * 12 11 9 36 36 H 1.09000 * 109.46947 * 153.94019 * 12 11 9 37 37 H 1.08999 * 113.28558 * 346.93692 * 13 11 9 38 38 H 1.08999 * 113.46862 * 332.93778 * 14 13 11 39 39 H 1.09000 * 113.46611 * 202.49769 * 14 13 11 40 40 H 0.96999 * 120.00580 * 354.91430 * 19 18 16 41 41 H 1.09004 * 113.46592 * 87.43560 * 24 15 14 42 42 H 1.08995 * 113.47232 * 217.87732 * 24 15 14 43 43 H 1.08004 * 120.04745 * 179.72136 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5720 -1.1697 0.1100 6 6 4.2275 -0.0672 0.6474 7 6 5.6000 -0.0661 0.7586 8 6 6.3356 -1.1748 0.3314 9 6 7.8069 -1.1758 0.4491 10 8 8.4900 -1.5877 -0.4686 11 7 8.3934 -0.7202 1.5739 12 6 7.5767 -0.1359 2.6407 13 6 9.8473 -0.8092 1.7297 14 6 10.5438 0.5451 1.9214 15 7 10.3053 0.4046 3.3658 16 6 10.1443 1.2563 4.4260 17 1 10.0509 2.3187 4.2559 18 6 10.1014 0.7540 5.7194 19 7 9.6807 1.5153 6.7072 20 14 10.6406 -1.0021 6.0578 21 1 9.4733 -1.9114 5.9316 22 1 11.6840 -1.3972 5.0777 23 1 11.1932 -1.0939 7.4330 24 6 10.3221 -1.0530 3.1716 25 6 5.6760 -2.2800 -0.2129 26 6 4.3012 -2.2774 -0.3164 27 9 3.6614 -3.3471 -0.8376 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8901 31 1 1.6990 -2.0054 -0.0778 32 1 3.6592 0.7897 0.9780 33 1 6.1075 0.7910 1.1757 34 1 7.4186 0.9234 2.4384 35 1 6.6142 -0.6457 2.6819 36 1 8.0899 -0.2509 3.5954 37 1 10.3211 -1.4547 0.9902 38 1 10.0041 1.3784 1.4714 39 1 11.6000 0.5319 1.6526 40 1 9.4708 2.4483 6.5452 41 1 11.3200 -1.4875 3.2323 42 1 9.5937 -1.5813 3.7866 43 1 6.2421 -3.1365 -0.5481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044376191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:25 Heat of formation + Delta-G solvation = 1.648919 kcal Electronic energy + Delta-G solvation = -28900.345057 eV Core-core repulsion = 24670.502520 eV Total energy + Delta-G solvation = -4229.842537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.20699 -41.01950 -40.25504 -38.70234 -37.59861 -35.30123 -34.29836 -32.38869 -31.46065 -30.79034 -29.23998 -28.10975 -26.41535 -25.32389 -24.54619 -23.17390 -22.43030 -21.11631 -20.47831 -18.91056 -18.47256 -17.85983 -17.51301 -17.32549 -16.50117 -16.22177 -16.04626 -15.78091 -15.65019 -15.05545 -14.91760 -14.66375 -14.24509 -13.97950 -13.80069 -13.48864 -13.35532 -13.28308 -13.12302 -13.09434 -12.70119 -12.52175 -12.34172 -12.00224 -11.91177 -11.38671 -11.36506 -10.92938 -10.86514 -10.61485 -10.25395 -10.22389 -9.74530 -9.66339 -9.25887 -9.09906 -8.77589 -8.41382 -8.21142 -7.24077 -6.35051 -3.29283 0.53167 0.96375 2.03640 2.48045 2.74035 3.09678 3.35705 3.43991 3.49696 3.57476 3.87095 4.13559 4.45256 4.52772 4.56564 4.69783 4.72098 4.81880 4.88418 4.98652 5.10532 5.12931 5.33286 5.34704 5.52109 5.61680 5.71811 5.80812 5.83469 5.89796 5.96638 6.03165 6.11674 6.19226 6.22052 6.34441 6.38170 6.58996 6.64139 6.81095 6.96134 7.05432 7.54645 7.67191 8.18791 8.28993 8.91815 9.43863 10.31069 11.14032 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.003086 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.589462 B = 9069.869575 C = 9958.960123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.516 6.516 4 N -0.668 5.668 5 C 0.136 3.864 6 C -0.120 4.120 7 C -0.071 4.071 8 C -0.114 4.114 9 C 0.559 3.441 10 O -0.542 6.542 11 N -0.571 5.571 12 C 0.075 3.925 13 C 0.098 3.902 14 C 0.106 3.894 15 N -0.622 5.622 16 C -0.302 4.302 17 H 0.082 0.918 18 C -0.022 4.022 19 N -0.931 5.931 20 Si 1.058 2.942 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.295 1.295 24 C 0.091 3.909 25 C -0.079 4.079 26 C 0.055 3.945 27 F -0.137 7.137 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.416 0.584 32 H 0.167 0.833 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.262 0.738 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.952 -8.025 -13.767 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.391 6.391 4 N -0.312 5.312 5 C 0.039 3.961 6 C -0.140 4.140 7 C -0.090 4.090 8 C -0.118 4.118 9 C 0.347 3.653 10 O -0.421 6.421 11 N -0.301 5.301 12 C -0.067 4.067 13 C -0.007 4.007 14 C -0.021 4.021 15 N -0.351 5.351 16 C -0.429 4.429 17 H 0.100 0.900 18 C -0.222 4.222 19 N -0.573 5.573 20 Si 0.889 3.111 21 H -0.221 1.221 22 H -0.207 1.207 23 H -0.223 1.223 24 C -0.035 4.035 25 C -0.099 4.099 26 C 0.033 3.967 27 F -0.116 7.116 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.252 0.748 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.184 -8.440 -12.829 23.045 hybrid contribution -0.300 0.579 -1.198 1.364 sum -17.484 -7.861 -14.027 23.753 Atomic orbital electron populations 1.21946 0.90065 1.06378 1.04824 1.21100 0.91137 0.82743 0.74988 1.90695 1.70133 1.31337 1.46910 1.43444 1.04883 1.10724 1.72103 1.17939 0.83249 0.95223 0.99649 1.21485 0.94461 0.98750 0.99279 1.21650 0.93459 0.97973 0.95903 1.19720 0.93725 0.95483 1.02848 1.18112 0.86926 0.77917 0.82340 1.90770 1.64733 1.48276 1.38338 1.47286 1.06973 1.58751 1.17084 1.22168 0.94510 0.97333 0.92707 1.22552 0.79793 0.99601 0.98767 1.22809 0.97245 0.95266 0.86813 1.46417 1.83905 1.00706 1.04076 1.20132 1.48053 0.90299 0.84383 0.90016 1.25730 0.99247 1.06550 0.90663 1.70900 1.45246 1.07907 1.33245 0.83848 0.76819 0.75024 0.75368 1.22124 1.20692 1.22282 1.23130 0.98939 0.88638 0.92772 1.20889 0.91452 0.99411 0.98111 1.17060 0.90250 0.85282 1.04098 1.91476 1.81747 1.53667 1.84716 0.88699 0.88180 0.88899 0.74773 0.81604 0.83516 0.92354 0.92098 0.87755 0.87531 0.93357 0.93535 0.92788 0.92283 0.92609 0.83476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.32 36.01 0.37 -0.26 16 2 C 0.51 4.26 7.77 -10.99 -0.09 4.18 16 3 O -0.52 -6.45 14.01 5.56 0.08 -6.37 16 4 N -0.67 -5.32 5.32 -9.80 -0.05 -5.37 16 5 C 0.14 1.50 6.49 -83.64 -0.54 0.95 16 6 C -0.12 -1.45 8.74 -39.47 -0.35 -1.80 16 7 C -0.07 -0.91 7.62 -39.22 -0.30 -1.21 16 8 C -0.11 -1.59 5.09 -104.95 -0.53 -2.13 16 9 C 0.56 9.33 7.29 -12.44 -0.09 9.24 16 10 O -0.54 -10.37 16.49 5.28 0.09 -10.29 16 11 N -0.57 -9.78 3.12 -174.76 -0.54 -10.32 16 12 C 0.08 1.25 8.13 59.85 0.49 1.74 16 13 C 0.10 1.76 4.66 -67.68 -0.32 1.44 16 14 C 0.11 2.06 8.31 -8.51 -0.07 1.99 16 15 N -0.62 -14.27 2.32 -184.63 -0.43 -14.70 16 16 C -0.30 -8.13 10.53 -15.06 -0.16 -8.29 16 17 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 18 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 19 N -0.93 -28.12 13.70 55.49 0.76 -27.36 16 20 Si 1.06 25.45 25.50 -169.99 -4.33 21.12 16 21 H -0.29 -6.74 6.99 56.52 0.40 -6.34 16 22 H -0.28 -6.27 5.55 56.52 0.31 -5.96 16 23 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 24 C 0.09 1.84 4.62 -8.37 -0.04 1.80 16 25 C -0.08 -0.99 9.63 -39.15 -0.38 -1.37 16 26 C 0.05 0.62 7.29 -39.32 -0.29 0.34 16 27 F -0.14 -1.44 16.75 2.25 0.04 -1.40 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.42 2.07 8.36 -40.82 -0.34 1.73 16 32 H 0.17 2.08 5.48 -52.48 -0.29 1.79 16 33 H 0.15 1.84 5.75 -52.49 -0.30 1.54 16 34 H 0.06 0.96 6.96 -51.93 -0.36 0.60 16 35 H 0.06 0.87 5.98 -51.93 -0.31 0.56 16 36 H 0.10 2.11 5.17 -51.93 -0.27 1.84 16 37 H 0.11 1.81 7.32 -51.93 -0.38 1.43 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.84 8.73 -40.82 -0.36 7.48 16 41 H 0.06 1.15 6.98 -51.93 -0.36 0.79 16 42 H 0.06 1.15 5.41 -51.93 -0.28 0.87 16 43 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -33.81 351.81 -6.58 -40.39 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.10 Total: 3.12 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -2.38 Total: 5.89 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.27 Total: -57.76 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.17 Total: -16.66 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.33 Total: 21.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.81 -6.58 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044376191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.038 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds