Wall clock time and date at job start Tue Mar 31 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21282 * 120.00213 * 2 1 4 4 N 1.34775 * 120.00033 * 180.02562 * 2 1 3 5 5 C 1.39553 * 119.99826 * 185.24905 * 4 2 1 6 6 C 1.39064 * 119.93604 * 21.01803 * 5 4 2 7 7 C 1.37696 * 120.10798 * 179.97438 * 6 5 4 8 8 C 1.39741 * 119.96160 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.06362 * 179.97438 * 8 7 6 10 10 O 1.21592 * 120.00377 * 223.38201 * 9 8 7 11 11 N 1.34784 * 120.00037 * 43.38361 * 9 8 7 12 12 C 1.46502 * 119.99691 * 355.64624 * 11 9 8 13 13 C 1.46494 * 120.00133 * 175.64137 * 11 9 8 14 14 C 1.53495 * 114.20477 * 120.00154 * 13 11 9 15 15 N 1.47063 * 87.98435 * 87.71976 * 14 13 11 16 16 C 1.36943 * 136.05741 * 207.08800 * 15 14 13 17 17 H 1.07996 * 119.99914 * 8.31168 * 16 15 14 18 18 C 1.38810 * 119.99758 * 188.31526 * 16 15 14 19 19 N 1.31624 * 119.99396 * 193.79985 * 18 16 15 20 20 Si 1.86793 * 120.00374 * 13.79586 * 18 16 15 21 21 H 1.48497 * 109.47431 * 269.99954 * 20 18 16 22 22 H 1.48501 * 109.47281 * 30.00475 * 20 18 16 23 23 H 1.48500 * 109.47122 * 150.00033 * 20 18 16 24 24 C 1.47061 * 87.88827 * 27.34040 * 15 14 13 25 25 C 1.39743 * 119.86897 * 0.26293 * 8 7 6 26 26 C 1.37868 * 119.89929 * 359.46058 * 25 8 7 27 27 F 1.35099 * 119.98737 * 180.25602 * 26 25 8 28 28 H 1.09002 * 109.47093 * 239.99650 * 1 2 3 29 29 H 1.08997 * 109.46893 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46710 * 119.99597 * 1 2 3 31 31 H 0.96994 * 120.00118 * 5.25504 * 4 2 1 32 32 H 1.08006 * 119.95043 * 359.97192 * 6 5 4 33 33 H 1.07994 * 120.01992 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46797 * 273.93973 * 12 11 9 35 35 H 1.09000 * 109.46809 * 33.94276 * 12 11 9 36 36 H 1.09000 * 109.46947 * 153.94019 * 12 11 9 37 37 H 1.08999 * 113.28558 * 346.93692 * 13 11 9 38 38 H 1.08999 * 113.46862 * 332.93778 * 14 13 11 39 39 H 1.09000 * 113.46611 * 202.49769 * 14 13 11 40 40 H 0.96999 * 120.00580 * 354.91430 * 19 18 16 41 41 H 1.09004 * 113.46592 * 87.43560 * 24 15 14 42 42 H 1.08995 * 113.47232 * 217.87732 * 24 15 14 43 43 H 1.08004 * 120.04745 * 179.72136 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5720 -1.1697 0.1100 6 6 4.2275 -0.0672 0.6474 7 6 5.6000 -0.0661 0.7586 8 6 6.3356 -1.1748 0.3314 9 6 7.8069 -1.1758 0.4491 10 8 8.4900 -1.5877 -0.4686 11 7 8.3934 -0.7202 1.5739 12 6 7.5767 -0.1359 2.6407 13 6 9.8473 -0.8092 1.7297 14 6 10.5438 0.5451 1.9214 15 7 10.3053 0.4046 3.3658 16 6 10.1443 1.2563 4.4260 17 1 10.0509 2.3187 4.2559 18 6 10.1014 0.7540 5.7194 19 7 9.6807 1.5153 6.7072 20 14 10.6406 -1.0021 6.0578 21 1 9.4733 -1.9114 5.9316 22 1 11.6840 -1.3972 5.0777 23 1 11.1932 -1.0939 7.4330 24 6 10.3221 -1.0530 3.1716 25 6 5.6760 -2.2800 -0.2129 26 6 4.3012 -2.2774 -0.3164 27 9 3.6614 -3.3471 -0.8376 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8901 31 1 1.6990 -2.0054 -0.0778 32 1 3.6592 0.7897 0.9780 33 1 6.1075 0.7910 1.1757 34 1 7.4186 0.9234 2.4384 35 1 6.6142 -0.6457 2.6819 36 1 8.0899 -0.2509 3.5954 37 1 10.3211 -1.4547 0.9902 38 1 10.0041 1.3784 1.4714 39 1 11.6000 0.5319 1.6526 40 1 9.4708 2.4483 6.5452 41 1 11.3200 -1.4875 3.2323 42 1 9.5937 -1.5813 3.7866 43 1 6.2421 -3.1365 -0.5481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044376191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:24 Heat of formation + Delta-G solvation = -21.470931 kcal Electronic energy + Delta-G solvation = -28901.347609 eV Core-core repulsion = 24670.502520 eV Total energy + Delta-G solvation = -4230.845089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.07795 -41.99298 -41.42848 -40.00148 -38.80845 -36.22579 -35.70022 -34.40591 -32.23546 -31.75833 -30.29087 -29.53848 -27.86793 -26.93635 -25.69423 -24.30594 -23.81567 -22.22909 -21.59197 -20.40138 -19.48676 -19.29843 -18.85449 -18.24760 -17.72150 -17.32933 -17.15874 -16.76718 -16.55084 -16.39887 -16.24694 -15.73683 -15.68813 -15.44679 -15.19042 -14.84110 -14.66625 -14.42039 -14.15036 -13.78507 -13.65103 -13.47028 -13.35879 -13.24060 -13.11960 -12.90384 -12.66414 -12.65896 -12.32170 -12.00361 -11.82798 -11.44627 -11.28584 -11.20091 -10.90795 -10.77430 -10.06178 -9.68606 -9.28232 -9.20964 -8.55279 -5.41970 -0.45209 0.00053 1.27521 1.43102 1.52725 1.58617 1.67793 1.81272 1.83691 2.45740 2.56383 2.92158 2.99193 3.22409 3.31959 3.49470 3.58471 3.73937 3.88258 4.01281 4.18658 4.25771 4.28889 4.33604 4.47669 4.55788 4.62720 4.64073 4.64955 4.68551 4.78818 4.83682 4.87883 4.90727 5.02713 5.10553 5.12992 5.17496 5.22344 5.51534 5.67089 5.99736 6.20700 6.31266 6.74254 6.91787 6.95378 7.36551 8.30720 8.95599 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.003086 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.589462 B = 9069.869575 C = 9958.960123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.562 6.562 4 N -0.658 5.658 5 C 0.146 3.854 6 C -0.127 4.127 7 C -0.069 4.069 8 C -0.132 4.132 9 C 0.565 3.435 10 O -0.567 6.567 11 N -0.576 5.576 12 C 0.086 3.914 13 C 0.114 3.886 14 C 0.106 3.894 15 N -0.645 5.645 16 C -0.279 4.279 17 H 0.049 0.951 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 1.093 2.907 21 H -0.277 1.277 22 H -0.251 1.251 23 H -0.309 1.309 24 C 0.090 3.910 25 C -0.076 4.076 26 C 0.060 3.940 27 F -0.129 7.129 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.432 0.568 32 H 0.162 0.838 33 H 0.144 0.856 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.247 0.753 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 -10.429 -15.501 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.299 3.701 3 O -0.440 6.440 4 N -0.303 5.303 5 C 0.047 3.953 6 C -0.147 4.147 7 C -0.088 4.088 8 C -0.136 4.136 9 C 0.355 3.645 10 O -0.448 6.448 11 N -0.305 5.305 12 C -0.056 4.056 13 C 0.009 3.991 14 C -0.020 4.020 15 N -0.374 5.374 16 C -0.406 4.406 17 H 0.067 0.933 18 C -0.269 4.269 19 N -0.615 5.615 20 Si 0.919 3.081 21 H -0.203 1.203 22 H -0.176 1.176 23 H -0.237 1.237 24 C -0.035 4.035 25 C -0.096 4.096 26 C 0.038 3.962 27 F -0.107 7.107 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.272 0.728 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.814 -10.883 -14.626 26.198 hybrid contribution 0.076 1.384 -0.811 1.606 sum -18.738 -9.500 -15.437 26.070 Atomic orbital electron populations 1.22000 0.86008 1.07031 1.07175 1.22042 0.92927 0.81847 0.73300 1.90683 1.71371 1.32951 1.48976 1.43538 1.03658 1.11797 1.71306 1.18015 0.84811 0.94423 0.98003 1.21461 0.94130 0.99192 0.99900 1.21597 0.93784 0.97593 0.95798 1.19496 0.92174 0.96695 1.05206 1.18397 0.87880 0.76770 0.81483 1.90750 1.65618 1.49384 1.39005 1.47342 1.06739 1.58971 1.17445 1.22022 0.95080 0.97590 0.90925 1.22394 0.80345 0.98523 0.97863 1.22976 0.98514 0.96112 0.84402 1.46349 1.84408 1.02128 1.04522 1.19873 1.45611 0.89477 0.85680 0.93347 1.26864 0.99716 1.09582 0.90774 1.71008 1.48536 1.07467 1.34476 0.83434 0.77763 0.71718 0.75142 1.20344 1.17579 1.23700 1.23302 0.99794 0.86565 0.93880 1.20953 0.92081 0.99089 0.97497 1.16916 0.89823 0.85547 1.03961 1.91501 1.81470 1.53239 1.84535 0.86280 0.88455 0.86291 0.72806 0.82043 0.83796 0.92696 0.89713 0.91002 0.85669 0.93975 0.91493 0.94392 0.90523 0.92883 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 10.32 71.24 0.74 0.05 16 2 C 0.51 7.43 7.77 87.66 0.68 8.11 16 3 O -0.56 -13.64 14.01 -3.03 -0.04 -13.68 16 4 N -0.66 -8.84 5.32 -303.32 -1.61 -10.45 16 5 C 0.15 2.93 6.49 38.37 0.25 3.18 16 6 C -0.13 -2.96 8.74 22.34 0.20 -2.77 16 7 C -0.07 -1.72 7.62 22.51 0.17 -1.54 16 8 C -0.13 -3.54 5.09 -20.08 -0.10 -3.64 16 9 C 0.56 18.14 7.29 86.71 0.63 18.77 16 10 O -0.57 -20.86 16.49 -4.01 -0.07 -20.92 16 11 N -0.58 -19.03 3.12 -825.08 -2.57 -21.60 16 12 C 0.09 2.85 8.13 127.77 1.04 3.89 16 13 C 0.11 3.87 4.66 45.55 0.21 4.08 16 14 C 0.11 3.99 8.31 83.18 0.69 4.68 16 15 N -0.65 -29.16 2.32 -738.05 -1.71 -30.87 16 16 C -0.28 -15.30 10.53 84.03 0.88 -14.41 16 17 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 18 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 19 N -0.97 -60.60 13.70 21.65 0.30 -60.30 16 20 Si 1.09 50.96 25.50 68.60 1.75 52.71 16 21 H -0.28 -12.05 6.99 99.48 0.70 -11.35 16 22 H -0.25 -10.37 5.55 99.48 0.55 -9.81 16 23 H -0.31 -14.99 7.11 99.48 0.71 -14.29 16 24 C 0.09 3.41 4.62 83.27 0.38 3.80 16 25 C -0.08 -1.79 9.63 22.55 0.22 -1.57 16 26 C 0.06 1.22 7.29 22.44 0.16 1.38 16 27 F -0.13 -2.33 16.75 44.97 0.75 -1.58 16 28 H 0.12 -0.02 8.14 -2.39 -0.02 -0.03 16 29 H 0.10 0.54 8.12 -2.39 -0.02 0.52 16 30 H 0.12 -0.07 8.14 -2.38 -0.02 -0.08 16 31 H 0.43 2.87 8.36 -92.71 -0.78 2.10 16 32 H 0.16 4.03 5.48 -2.91 -0.02 4.01 16 33 H 0.14 3.61 5.75 -2.91 -0.02 3.59 16 34 H 0.05 1.83 6.96 -2.39 -0.02 1.81 16 35 H 0.08 2.37 5.98 -2.39 -0.01 2.35 16 36 H 0.07 2.90 5.17 -2.39 -0.01 2.89 16 37 H 0.13 3.89 7.32 -2.39 -0.02 3.88 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.25 15.55 8.73 -92.71 -0.81 14.74 16 41 H 0.08 2.71 6.98 -2.39 -0.02 2.69 16 42 H 0.05 2.07 5.41 -2.39 -0.01 2.06 16 43 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -74.93 351.81 3.51 -71.41 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.10 Total: 15.20 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.62 Total: 20.09 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.60 Total: -123.23 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.11 Total: -34.61 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.75 Total: -1.58 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 1.75 Total: 52.71 kcal Total: -74.93 3.51 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044376191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.943 kcal (2) G-P(sol) polarization free energy of solvation -74.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds