Wall clock time and date at job start Tue Mar 31 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35723 * 117.00127 * 2 1 4 4 C 1.39356 * 120.36061 * 359.97438 * 3 2 1 5 5 N 1.31291 * 120.88141 * 180.30478 * 4 3 2 6 6 C 1.32891 * 121.71599 * 359.43439 * 5 4 3 7 7 C 1.47760 * 119.68573 * 180.29379 * 6 5 4 8 8 O 1.21567 * 119.99501 * 180.26780 * 7 6 5 9 9 N 1.34770 * 119.99859 * 0.26817 * 7 6 5 10 10 C 1.47343 * 125.53145 * 359.69256 * 9 7 6 11 11 C 1.55153 * 104.78580 * 156.48869 * 10 9 7 12 12 C 1.54801 * 101.40533 * 37.52367 * 11 10 9 13 13 H 1.08996 * 112.64272 * 85.17196 * 12 11 10 14 14 C 1.53267 * 109.74897 * 212.13041 * 12 11 10 15 15 N 1.46578 * 108.16020 * 95.76085 * 14 12 11 16 16 C 1.36942 * 125.30725 * 177.89047 * 15 14 12 17 17 H 1.08002 * 119.99561 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00143 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00152 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46935 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46952 * 120.00173 * 20 18 16 23 23 H 1.48499 * 109.46996 * 239.99747 * 20 18 16 24 24 C 1.46612 * 109.39031 * 357.88759 * 15 14 12 25 25 C 1.47222 * 125.52465 * 180.02562 * 9 7 6 26 26 H 1.09000 * 112.29068 * 56.20786 * 25 9 7 27 27 C 1.39720 * 120.62744 * 0.56571 * 6 5 4 28 28 F 1.35099 * 120.46969 * 179.75086 * 27 6 5 29 29 C 1.38694 * 119.06457 * 359.72277 * 27 6 5 30 30 H 1.08998 * 109.47458 * 300.00580 * 1 2 3 31 31 H 1.09006 * 109.46467 * 60.00590 * 1 2 3 32 32 H 1.09003 * 109.47297 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.55611 * 0.02562 * 4 3 2 34 34 H 1.09001 * 110.35915 * 275.43061 * 10 9 7 35 35 H 1.08994 * 110.35636 * 37.73137 * 10 9 7 36 36 H 1.08995 * 111.20880 * 279.43587 * 11 10 9 37 37 H 1.08999 * 110.95956 * 155.49373 * 11 10 9 38 38 H 1.09000 * 109.73503 * 215.44802 * 14 12 11 39 39 H 1.08995 * 109.73557 * 336.07225 * 14 12 11 40 40 H 0.97003 * 120.00364 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.90986 * 258.45717 * 24 15 14 42 42 H 1.08992 * 109.91574 * 137.17480 * 24 15 14 43 43 H 1.08002 * 120.78185 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 -0.0005 5 7 1.8790 3.5580 -0.0065 6 6 3.2023 3.6793 -0.0012 7 6 3.8139 5.0244 -0.0017 8 8 5.0239 5.1419 -0.0017 9 7 3.0302 6.1208 -0.0022 10 6 1.5568 6.1203 -0.0087 11 6 1.1577 7.4941 0.5917 12 6 2.2455 8.4179 -0.0079 13 1 1.9877 8.7782 -1.0038 14 6 2.5649 9.5486 0.9763 15 7 3.7390 9.1539 1.7600 16 6 4.3491 9.9239 2.7141 17 1 3.9668 10.9088 2.9387 18 6 5.4586 9.4387 3.3925 19 7 5.9241 8.2383 3.1192 20 14 6.2911 10.4894 4.6935 21 1 5.5801 11.7878 4.8105 22 1 6.2520 9.7835 5.9993 23 1 7.7035 10.7322 4.3042 24 6 4.1585 7.8062 1.3634 25 6 3.5077 7.5135 -0.0033 26 1 4.1721 7.7221 -0.8419 27 6 4.0209 2.5470 -0.0007 28 9 5.3659 2.6740 -0.0002 29 6 3.4332 1.2907 0.0000 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 0.2151 2.3247 -0.0005 34 1 1.1821 6.0262 -1.0279 35 1 1.1752 5.3103 0.6128 36 1 1.2134 7.4799 1.6802 37 1 0.1641 7.7920 0.2571 38 1 2.7802 10.4650 0.4268 39 1 1.7159 9.7090 1.6406 40 1 6.6997 7.8993 3.5930 41 1 3.8174 7.0793 2.1005 42 1 5.2440 7.7666 1.2737 43 1 4.0395 0.3969 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075863997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:04 Heat of formation + Delta-G solvation = -20.202906 kcal Electronic energy + Delta-G solvation = -29573.011672 eV Core-core repulsion = 25342.221569 eV Total energy + Delta-G solvation = -4230.790103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.01058 -41.09716 -39.92582 -38.54331 -37.43213 -34.87153 -32.79923 -32.09011 -30.81581 -30.49814 -28.58183 -27.98120 -26.70566 -24.83626 -24.44223 -23.37639 -22.37062 -20.68458 -19.91541 -18.99259 -18.78539 -18.08988 -17.29596 -16.73392 -16.57330 -16.38972 -15.81193 -15.61812 -15.35587 -15.05641 -14.53496 -14.50488 -14.11864 -13.69244 -13.50439 -13.36748 -13.16693 -12.94748 -12.71379 -12.62039 -12.32777 -12.04275 -11.96962 -11.82545 -11.45570 -11.12342 -10.98741 -10.75413 -10.52065 -10.17861 -9.95792 -9.86338 -9.77612 -9.71002 -9.63014 -9.39656 -8.86428 -8.53135 -8.06415 -6.74650 -5.55748 -2.98039 0.37072 0.68247 2.49883 2.77068 3.18566 3.45976 3.50356 3.53966 3.69114 3.87039 3.94945 4.13283 4.41512 4.56297 4.56475 4.64241 4.64716 4.92962 4.99763 5.00745 5.03620 5.33894 5.36320 5.48965 5.58176 5.70543 5.75472 5.89792 5.99043 6.01791 6.14291 6.18878 6.29222 6.47594 6.60503 6.62175 6.72141 6.76632 6.96310 7.30810 7.62239 7.71401 7.94902 8.04476 8.43837 8.55121 9.31253 9.92371 10.54775 11.48518 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.003318 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.142322 B = 8435.671467 C = 9308.709263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.304 6.304 3 C 0.125 3.875 4 C 0.004 3.996 5 N -0.387 5.387 6 C 0.022 3.978 7 C 0.577 3.423 8 O -0.511 6.511 9 N -0.586 5.586 10 C 0.107 3.893 11 C -0.127 4.127 12 C -0.109 4.109 13 H 0.087 0.913 14 C 0.146 3.854 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.913 5.913 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.166 3.834 25 C 0.114 3.886 26 H 0.084 0.916 27 C 0.156 3.844 28 F -0.095 7.095 29 C -0.160 4.160 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.171 0.829 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.252 0.748 41 H 0.020 0.980 42 H 0.096 0.904 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.324 -16.363 -9.515 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.215 6.215 3 C 0.076 3.924 4 C -0.158 4.158 5 N -0.099 5.099 6 C -0.118 4.118 7 C 0.363 3.637 8 O -0.385 6.385 9 N -0.319 5.319 10 C -0.016 4.016 11 C -0.165 4.165 12 C -0.129 4.129 13 H 0.105 0.895 14 C 0.019 3.981 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.560 5.560 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.041 3.959 25 C 0.010 3.990 26 H 0.102 0.898 27 C 0.133 3.867 28 F -0.073 7.073 29 C -0.187 4.187 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.188 0.812 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.114 0.886 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.781 -15.803 -9.372 23.581 hybrid contribution 0.780 -0.284 0.729 1.105 sum -14.001 -16.087 -8.642 23.012 Atomic orbital electron populations 1.23246 0.77111 1.04878 1.02145 1.86057 1.22335 1.25602 1.87540 1.19985 0.92043 0.86026 0.94336 1.23131 1.01096 0.86662 1.04947 1.67846 1.09391 1.25778 1.06839 1.21418 0.89270 0.94314 1.06782 1.17058 0.85901 0.82068 0.78670 1.90918 1.12613 1.85428 1.49574 1.48257 1.07287 1.05489 1.70856 1.22608 0.79729 0.98491 1.00790 1.22913 0.97989 0.94049 1.01519 1.22874 0.94736 0.96103 0.99175 0.89495 1.20974 0.90959 0.94174 0.91949 1.44176 1.30115 1.15204 1.43367 1.19062 1.08075 0.97374 1.11364 0.90331 1.24857 0.98686 0.96859 1.00076 1.69942 1.25946 1.16390 1.43743 0.86041 0.79341 0.79157 0.81182 1.20544 1.21826 1.21731 1.21663 1.00994 0.85547 0.87735 1.23043 0.95861 0.78238 1.01815 0.89828 1.18236 0.78944 0.92637 0.96888 1.91672 1.27023 1.96388 1.92171 1.20812 0.92889 0.97691 1.07314 0.91796 0.91862 0.87505 0.81163 0.92055 0.88545 0.90141 0.90561 0.95921 0.95699 0.93693 0.96212 0.88565 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.07 16 2 O -0.30 -2.37 10.50 -18.87 -0.20 -2.56 16 3 C 0.13 1.20 6.72 -38.87 -0.26 0.93 16 4 C 0.00 0.03 10.21 -17.37 -0.18 -0.14 16 5 N -0.39 -5.04 6.57 -9.63 -0.06 -5.10 16 6 C 0.02 0.35 6.72 -82.96 -0.56 -0.21 16 7 C 0.58 11.61 7.64 -12.37 -0.09 11.51 16 8 O -0.51 -12.25 15.42 5.31 0.08 -12.17 16 9 N -0.59 -11.07 2.85 -162.64 -0.46 -11.53 16 10 C 0.11 1.56 5.90 -2.44 -0.01 1.55 16 11 C -0.13 -1.88 6.25 -24.64 -0.15 -2.04 16 12 C -0.11 -1.90 3.90 -88.33 -0.34 -2.24 16 13 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.15 3.05 6.65 -3.86 -0.03 3.02 16 15 N -0.60 -15.97 3.37 -172.20 -0.58 -16.55 16 16 C -0.23 -6.63 10.25 -15.06 -0.15 -6.78 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 19 N -0.91 -28.41 10.17 55.49 0.56 -27.84 16 20 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C 0.17 4.37 4.80 -3.36 -0.02 4.36 16 25 C 0.11 2.37 3.88 -65.71 -0.25 2.12 16 26 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 27 C 0.16 2.30 7.31 -38.86 -0.28 2.01 16 28 F -0.09 -1.62 15.54 2.25 0.03 -1.58 16 29 C -0.16 -1.77 10.10 -39.11 -0.40 -2.16 16 30 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 31 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 32 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.17 0.98 6.31 -52.49 -0.33 0.65 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.36 5.90 -51.93 -0.31 1.05 16 36 H 0.08 1.39 7.88 -51.93 -0.41 0.98 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 40 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.02 0.58 7.94 -51.93 -0.41 0.17 16 42 H 0.10 2.96 6.23 -51.93 -0.32 2.64 16 43 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -36.03 351.31 -7.68 -43.71 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.49 Total: -2.18 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -1.84 Total: 12.66 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.54 Total: -61.03 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.12 Total: -14.73 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.03 -7.68 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075863997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.504 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds