Wall clock time and date at job start Tue Mar 31 2020 18:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35723 * 117.00127 * 2 1 4 4 C 1.39356 * 120.36061 * 359.97438 * 3 2 1 5 5 N 1.31291 * 120.88141 * 180.30478 * 4 3 2 6 6 C 1.32891 * 121.71599 * 359.43439 * 5 4 3 7 7 C 1.47760 * 119.68573 * 180.29379 * 6 5 4 8 8 O 1.21567 * 119.99501 * 180.26780 * 7 6 5 9 9 N 1.34770 * 119.99859 * 0.26817 * 7 6 5 10 10 C 1.47343 * 125.53145 * 359.69256 * 9 7 6 11 11 C 1.55153 * 104.78580 * 156.48869 * 10 9 7 12 12 C 1.54801 * 101.40533 * 37.52367 * 11 10 9 13 13 H 1.08996 * 112.64272 * 85.17196 * 12 11 10 14 14 C 1.53267 * 109.74897 * 212.13041 * 12 11 10 15 15 N 1.46578 * 108.16020 * 95.76085 * 14 12 11 16 16 C 1.36942 * 125.30725 * 177.89047 * 15 14 12 17 17 H 1.08002 * 119.99561 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00143 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00152 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46935 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46952 * 120.00173 * 20 18 16 23 23 H 1.48499 * 109.46996 * 239.99747 * 20 18 16 24 24 C 1.46612 * 109.39031 * 357.88759 * 15 14 12 25 25 C 1.47222 * 125.52465 * 180.02562 * 9 7 6 26 26 H 1.09000 * 112.29068 * 56.20786 * 25 9 7 27 27 C 1.39720 * 120.62744 * 0.56571 * 6 5 4 28 28 F 1.35099 * 120.46969 * 179.75086 * 27 6 5 29 29 C 1.38694 * 119.06457 * 359.72277 * 27 6 5 30 30 H 1.08998 * 109.47458 * 300.00580 * 1 2 3 31 31 H 1.09006 * 109.46467 * 60.00590 * 1 2 3 32 32 H 1.09003 * 109.47297 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.55611 * 0.02562 * 4 3 2 34 34 H 1.09001 * 110.35915 * 275.43061 * 10 9 7 35 35 H 1.08994 * 110.35636 * 37.73137 * 10 9 7 36 36 H 1.08995 * 111.20880 * 279.43587 * 11 10 9 37 37 H 1.08999 * 110.95956 * 155.49373 * 11 10 9 38 38 H 1.09000 * 109.73503 * 215.44802 * 14 12 11 39 39 H 1.08995 * 109.73557 * 336.07225 * 14 12 11 40 40 H 0.97003 * 120.00364 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.90986 * 258.45717 * 24 15 14 42 42 H 1.08992 * 109.91574 * 137.17480 * 24 15 14 43 43 H 1.08002 * 120.78185 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 -0.0005 5 7 1.8790 3.5580 -0.0065 6 6 3.2023 3.6793 -0.0012 7 6 3.8139 5.0244 -0.0017 8 8 5.0239 5.1419 -0.0017 9 7 3.0302 6.1208 -0.0022 10 6 1.5568 6.1203 -0.0087 11 6 1.1577 7.4941 0.5917 12 6 2.2455 8.4179 -0.0079 13 1 1.9877 8.7782 -1.0038 14 6 2.5649 9.5486 0.9763 15 7 3.7390 9.1539 1.7600 16 6 4.3491 9.9239 2.7141 17 1 3.9668 10.9088 2.9387 18 6 5.4586 9.4387 3.3925 19 7 5.9241 8.2383 3.1192 20 14 6.2911 10.4894 4.6935 21 1 5.5801 11.7878 4.8105 22 1 6.2520 9.7835 5.9993 23 1 7.7035 10.7322 4.3042 24 6 4.1585 7.8062 1.3634 25 6 3.5077 7.5135 -0.0033 26 1 4.1721 7.7221 -0.8419 27 6 4.0209 2.5470 -0.0007 28 9 5.3659 2.6740 -0.0002 29 6 3.4332 1.2907 0.0000 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 0.2151 2.3247 -0.0005 34 1 1.1821 6.0262 -1.0279 35 1 1.1752 5.3103 0.6128 36 1 1.2134 7.4799 1.6802 37 1 0.1641 7.7920 0.2571 38 1 2.7802 10.4650 0.4268 39 1 1.7159 9.7090 1.6406 40 1 6.6997 7.8993 3.5930 41 1 3.8174 7.0793 2.1005 42 1 5.2440 7.7666 1.2737 43 1 4.0395 0.3969 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075863997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:03 Heat of formation + Delta-G solvation = -46.120378 kcal Electronic energy + Delta-G solvation = -29574.135538 eV Core-core repulsion = 25342.221569 eV Total energy + Delta-G solvation = -4231.913969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.18863 -42.08061 -41.25088 -39.63565 -38.77348 -36.66371 -34.22427 -33.47094 -32.29537 -31.75188 -30.27555 -28.61359 -28.22294 -26.52714 -25.82781 -24.40041 -23.59863 -22.38088 -21.44049 -20.48085 -19.60368 -19.17790 -18.88254 -18.40922 -17.48685 -17.36459 -17.06517 -17.03666 -16.59756 -16.30984 -15.97189 -15.76231 -15.50837 -15.12844 -14.96108 -14.55032 -14.43194 -14.15778 -14.10898 -13.91147 -13.68988 -13.45637 -13.22820 -13.01203 -12.82805 -12.81154 -12.59001 -12.48342 -12.10869 -11.88201 -11.74901 -11.54705 -11.39591 -11.27037 -10.79046 -10.75653 -10.56537 -9.83675 -9.51696 -8.92184 -7.79416 -5.25298 -0.65260 -0.20602 1.41889 1.44875 1.55519 1.57586 1.75393 1.94041 2.47527 2.50476 2.86281 2.96177 3.31200 3.34773 3.39007 3.59643 3.66715 3.72507 3.82404 3.98062 4.05274 4.35637 4.37234 4.43226 4.45208 4.47096 4.51477 4.61220 4.68391 4.83274 4.85418 4.91334 4.98023 5.10863 5.15004 5.22945 5.33252 5.47529 5.50228 5.57378 5.79529 5.98813 6.23234 6.34954 6.54236 7.03255 7.09030 7.77532 8.38584 9.23144 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.003318 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.142322 B = 8435.671467 C = 9308.709263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.307 6.307 3 C 0.149 3.851 4 C 0.021 3.979 5 N -0.389 5.389 6 C -0.011 4.011 7 C 0.565 3.435 8 O -0.573 6.573 9 N -0.589 5.589 10 C 0.108 3.892 11 C -0.117 4.117 12 C -0.092 4.092 13 H 0.131 0.869 14 C 0.138 3.862 15 N -0.624 5.624 16 C -0.239 4.239 17 H 0.092 0.908 18 C -0.075 4.075 19 N -0.952 5.952 20 Si 0.984 3.016 21 H -0.257 1.257 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.187 3.813 25 C 0.115 3.885 26 H 0.072 0.928 27 C 0.133 3.867 28 F -0.121 7.121 29 C -0.159 4.159 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.219 0.781 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.127 0.873 38 H 0.033 0.967 39 H 0.039 0.961 40 H 0.242 0.758 41 H -0.024 1.024 42 H 0.039 0.961 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.155 -17.199 -10.548 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.217 6.217 3 C 0.099 3.901 4 C -0.143 4.143 5 N -0.101 5.101 6 C -0.147 4.147 7 C 0.353 3.647 8 O -0.452 6.452 9 N -0.321 5.321 10 C -0.013 4.013 11 C -0.154 4.154 12 C -0.111 4.111 13 H 0.149 0.851 14 C 0.013 3.987 15 N -0.351 5.351 16 C -0.368 4.368 17 H 0.109 0.891 18 C -0.267 4.267 19 N -0.601 5.601 20 Si 0.812 3.188 21 H -0.180 1.180 22 H -0.221 1.221 23 H -0.222 1.222 24 C 0.061 3.939 25 C 0.011 3.989 26 H 0.090 0.910 27 C 0.110 3.890 28 F -0.099 7.099 29 C -0.185 4.185 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.236 0.764 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.051 0.949 41 H -0.007 1.007 42 H 0.057 0.943 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.692 -16.613 -10.425 27.793 hybrid contribution 2.074 -0.204 1.042 2.330 sum -17.618 -16.817 -9.383 26.101 Atomic orbital electron populations 1.23710 0.74415 1.06993 1.03775 1.86098 1.24981 1.24243 1.86392 1.19992 0.91438 0.87038 0.91667 1.23884 1.02993 0.85331 1.02055 1.67751 1.07540 1.27590 1.07220 1.20768 0.90801 0.92183 1.10978 1.17823 0.85530 0.83937 0.77418 1.90863 1.15318 1.86674 1.52350 1.48393 1.09263 1.04244 1.70164 1.22895 0.76766 0.98754 1.02898 1.22930 0.99568 0.93296 0.99652 1.22936 0.93385 0.94161 1.00623 0.85092 1.21265 0.89137 0.95943 0.92377 1.44502 1.31969 1.15004 1.43628 1.19559 1.07920 0.97951 1.11373 0.89067 1.25834 0.99861 0.98172 1.02877 1.70295 1.26192 1.18586 1.45026 0.84925 0.77821 0.78244 0.77836 1.18037 1.22116 1.22174 1.21123 0.97938 0.84963 0.89889 1.22746 0.97600 0.80895 0.97691 0.91027 1.18526 0.77965 0.93936 0.98542 1.91597 1.28987 1.96637 1.92714 1.20961 0.94167 0.96653 1.06691 0.90330 0.89916 0.85449 0.76438 0.88735 0.87670 0.93136 0.85452 0.94854 0.94329 0.94892 1.00656 0.94323 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -3.44 10.50 -90.45 -0.95 -4.39 16 3 C 0.15 2.36 6.72 22.73 0.15 2.51 16 4 C 0.02 0.32 10.21 85.04 0.87 1.19 16 5 N -0.39 -9.37 6.57 -184.39 -1.21 -10.58 16 6 C -0.01 -0.36 6.72 41.86 0.28 -0.07 16 7 C 0.56 24.37 7.64 86.76 0.66 25.03 16 8 O -0.57 -30.55 15.42 -3.93 -0.06 -30.61 16 9 N -0.59 -22.91 2.85 -786.76 -2.24 -25.15 16 10 C 0.11 2.90 5.90 86.96 0.51 3.41 16 11 C -0.12 -3.11 6.25 31.95 0.20 -2.91 16 12 C -0.09 -3.00 3.90 -9.31 -0.04 -3.03 16 13 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 14 C 0.14 5.61 6.65 86.45 0.58 6.19 16 15 N -0.62 -34.32 3.37 -698.70 -2.36 -36.67 16 16 C -0.24 -14.14 10.25 84.03 0.86 -13.28 16 17 H 0.09 5.03 7.83 -2.91 -0.02 5.00 16 18 C -0.08 -4.61 5.48 84.86 0.47 -4.15 16 19 N -0.95 -63.70 10.17 21.65 0.22 -63.48 16 20 Si 0.98 48.80 29.55 68.60 2.03 50.83 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 24 C 0.19 10.62 4.80 86.76 0.42 11.03 16 25 C 0.12 4.99 3.88 46.03 0.18 5.17 16 26 H 0.07 3.22 8.14 -2.39 -0.02 3.21 16 27 C 0.13 4.12 7.31 22.74 0.17 4.29 16 28 F -0.12 -4.57 15.54 44.97 0.70 -3.87 16 29 C -0.16 -3.34 10.10 22.57 0.23 -3.11 16 30 H 0.08 0.00 7.67 -2.39 -0.02 -0.02 16 31 H 0.08 -0.08 7.67 -2.38 -0.02 -0.10 16 32 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.22 1.11 6.31 -2.91 -0.02 1.09 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.11 2.69 5.90 -2.39 -0.01 2.67 16 36 H 0.05 1.67 7.88 -2.39 -0.02 1.65 16 37 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.49 7.74 -2.39 -0.02 1.47 16 40 H 0.24 15.87 8.31 -92.71 -0.77 15.10 16 41 H -0.02 -1.56 7.94 -2.38 -0.02 -1.58 16 42 H 0.04 2.62 6.23 -2.39 -0.01 2.60 16 43 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -90.67 351.31 3.82 -86.85 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.05 Total: 3.69 kcal Atomic # 6 Polarization: 26.75 SS G_CDS: 6.65 Total: 33.39 kcal Atomic # 7 Polarization: -130.29 SS G_CDS: -5.59 Total: -135.88 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.01 Total: -35.00 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.70 Total: -3.87 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -90.67 3.82 -86.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075863997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.728 kcal (2) G-P(sol) polarization free energy of solvation -90.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds