Wall clock time and date at job start Tue Mar 31 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00322 * 2 1 4 4 H 1.08998 * 110.77908 * 26.75770 * 3 2 1 5 5 C 1.54331 * 110.71952 * 263.52704 * 3 2 1 6 6 N 1.47018 * 107.26686 * 219.44060 * 5 3 2 7 7 C 1.36944 * 125.64824 * 178.89823 * 6 5 3 8 8 H 1.07999 * 120.00503 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99589 * 0.02659 * 7 6 5 10 10 N 1.31619 * 120.00011 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99977 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47047 * 89.99754 * 11 9 7 13 13 H 1.48498 * 109.47320 * 209.99931 * 11 9 7 14 14 H 1.48498 * 109.46915 * 329.99997 * 11 9 7 15 15 C 1.47464 * 108.72943 * 358.97441 * 6 5 3 16 16 C 1.54906 * 104.80858 * 24.06700 * 15 6 5 17 17 H 1.09001 * 111.00783 * 81.14135 * 16 15 6 18 18 N 1.46504 * 111.00765 * 204.95267 * 16 15 6 19 19 C 1.34783 * 120.00028 * 270.42211 * 18 16 15 20 20 O 1.21493 * 119.99539 * 359.97438 * 19 18 16 21 21 C 1.48304 * 119.99846 * 179.97438 * 19 18 16 22 22 N 1.32886 * 120.14479 * 283.76430 * 21 19 18 23 23 C 1.31837 * 119.99563 * 180.02562 * 22 21 19 24 24 C 1.39004 * 120.29175 * 359.97438 * 23 22 21 25 25 N 1.31835 * 120.29201 * 0.02562 * 24 23 22 26 26 C 1.32890 * 119.99496 * 359.97438 * 25 24 23 27 27 C 1.48302 * 120.14320 * 179.97438 * 26 25 24 28 28 N 1.34779 * 120.00170 * 354.65495 * 27 26 25 29 29 O 1.21501 * 119.99965 * 174.64497 * 27 26 25 30 30 H 1.08996 * 109.46866 * 60.00197 * 1 2 3 31 31 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47002 * 300.00127 * 1 2 3 33 33 H 1.09000 * 109.88125 * 338.85272 * 5 3 2 34 34 H 1.08999 * 109.88237 * 100.02147 * 5 3 2 35 35 H 0.97005 * 119.99656 * 180.02562 * 10 9 7 36 36 H 1.09003 * 110.34638 * 265.25573 * 15 6 5 37 37 H 1.08992 * 110.41085 * 142.91683 * 15 6 5 38 38 H 0.97003 * 120.00156 * 90.41952 * 18 16 15 39 39 H 1.08003 * 119.85373 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.85007 * 180.02562 * 24 23 22 41 41 H 0.97000 * 119.99587 * 359.97438 * 28 27 26 42 42 H 0.97003 * 120.00366 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0288 0.4588 5 6 2.3810 1.7380 -1.4343 6 7 3.6685 2.4438 -1.3582 7 6 4.3548 2.9690 -2.4205 8 1 5.2973 3.4711 -2.2595 9 6 3.8389 2.8561 -3.7042 10 7 2.6904 2.2438 -3.9004 11 14 4.7746 3.5731 -5.1533 12 1 5.6984 2.5481 -5.7019 13 1 3.8136 3.9880 -6.2067 14 1 5.5555 4.7532 -4.7031 15 6 4.0998 2.4912 0.0512 16 6 3.3817 1.2958 0.7255 17 1 3.9155 0.3638 0.5395 18 7 3.2168 1.5251 2.1631 19 6 4.1769 1.1307 3.0229 20 8 5.1788 0.5846 2.6058 21 6 4.0103 1.3635 4.4781 22 7 4.1917 2.5785 4.9846 23 6 4.0432 2.7819 6.2787 24 6 3.6966 1.7300 7.1187 25 7 3.5138 0.5200 6.6283 26 6 3.6604 0.3019 5.3256 27 6 3.4562 -1.0580 4.7705 28 7 3.2275 -2.0966 5.5986 29 8 3.4949 -1.2360 3.5693 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.4769 0.8600 -2.0732 34 1 1.6153 2.4052 -1.8299 35 1 2.3301 2.1645 -4.7976 36 1 3.7888 3.4291 0.5114 37 1 5.1810 2.3732 0.1220 38 1 2.4167 1.9609 2.4961 39 1 4.1908 3.7705 6.6880 40 1 3.5764 1.9048 8.1777 41 1 3.1969 -1.9545 6.5576 42 1 3.0936 -2.9861 5.2355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082362138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:06 Heat of formation + Delta-G solvation = -20.310978 kcal Electronic energy + Delta-G solvation = -29365.307029 eV Core-core repulsion = 25154.432201 eV Total energy + Delta-G solvation = -4210.874828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87269 -39.48019 -39.22812 -37.95478 -35.81160 -35.09470 -33.98784 -33.71301 -32.33517 -31.54294 -28.75235 -27.31192 -26.08703 -26.03272 -25.67666 -24.03402 -21.75622 -21.33471 -20.44725 -19.99657 -18.63173 -18.45645 -18.20533 -16.90524 -16.71633 -16.49046 -15.86688 -15.78605 -15.36610 -15.20745 -14.71336 -14.38465 -14.35406 -14.21730 -14.02631 -13.93261 -13.55352 -13.16127 -12.70589 -12.28966 -12.16205 -11.84456 -11.80126 -11.48982 -11.14669 -10.94130 -10.75601 -10.75070 -10.69486 -10.27957 -10.06633 -9.98610 -9.93583 -9.88679 -9.72090 -9.50445 -9.03998 -8.68566 -8.50852 -6.81756 -5.66841 -3.01495 -0.20115 0.40075 2.35852 2.60118 2.78732 3.00233 3.24156 3.45579 3.50259 3.50854 3.51994 3.91286 4.00242 4.23313 4.39013 4.57245 4.58828 4.75726 4.78990 5.22048 5.46988 5.55016 5.60281 5.64832 5.72634 5.78379 5.92945 5.98636 6.16109 6.24350 6.41630 6.50693 6.60001 6.71949 6.88933 6.92516 7.11284 7.33788 7.54749 7.65087 7.78797 7.89822 7.95030 8.26228 8.34719 9.24088 9.84126 10.47775 11.44578 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003169 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.686798 B = 8834.323842 C = 9659.109927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.373 6.373 3 C 0.057 3.943 4 H 0.062 0.938 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.110 0.890 18 N -0.695 5.695 19 C 0.592 3.408 20 O -0.505 6.505 21 C 0.107 3.893 22 N -0.409 5.409 23 C 0.079 3.921 24 C 0.058 3.942 25 N -0.411 5.411 26 C 0.058 3.942 27 C 0.569 3.431 28 N -0.834 5.834 29 O -0.489 6.489 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.252 0.748 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.394 0.606 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.409 0.591 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.694 -2.771 26.417 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.291 6.291 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.041 3.959 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.128 0.872 18 N -0.344 5.344 19 C 0.373 3.627 20 O -0.377 6.377 21 C -0.036 4.036 22 N -0.125 5.125 23 C -0.083 4.083 24 C -0.105 4.105 25 N -0.128 5.128 26 C -0.084 4.084 27 C 0.349 3.651 28 N -0.399 5.399 29 O -0.360 6.360 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.228 0.772 39 H 0.203 0.797 40 H 0.201 0.799 41 H 0.238 0.762 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.816 -3.321 24.950 25.458 hybrid contribution -0.293 0.624 0.071 0.693 sum -4.109 -2.697 25.022 25.500 Atomic orbital electron populations 1.22690 0.81974 1.01968 0.99533 1.87950 1.18844 1.27346 1.94982 1.23829 0.92866 0.84137 0.99425 0.92040 1.21556 0.88198 0.97238 0.88929 1.44269 1.21363 1.66491 1.00672 1.19091 1.02289 1.29383 0.84696 0.90122 1.24815 0.97439 1.00796 0.97363 1.69946 1.19186 1.47354 1.20519 0.86075 0.78610 0.78574 0.82250 1.21528 1.21732 1.20666 1.21849 0.97870 0.93840 0.86166 1.22458 0.96653 1.01214 0.76435 0.87230 1.45632 1.21252 1.60317 1.07222 1.17157 0.84113 0.78511 0.82871 1.90834 1.28936 1.41231 1.76733 1.22373 0.94245 0.89574 0.97398 1.68698 1.09296 1.20215 1.14257 1.24264 0.93165 1.01646 0.89268 1.24071 0.95571 0.88359 1.02477 1.68368 1.09367 1.23472 1.11620 1.22115 1.00079 0.95775 0.90387 1.17635 0.77582 0.83516 0.86358 1.43504 1.74717 1.10532 1.11147 1.91037 1.48004 1.83412 1.13544 0.93703 0.90305 0.95073 0.91886 0.93354 0.93723 0.95752 0.93031 0.77227 0.79747 0.79877 0.76162 0.75857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.85 101.05 1.10 1.63 16 2 O -0.37 -7.45 10.43 -35.23 -0.37 -7.82 16 3 C 0.06 1.15 3.08 -24.89 -0.08 1.07 16 4 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 5 C 0.17 4.20 5.15 -3.06 -0.02 4.18 16 6 N -0.60 -16.05 3.40 -170.04 -0.58 -16.63 16 7 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 10 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 11 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.13 2.96 6.93 -2.51 -0.02 2.94 16 16 C 0.14 2.83 3.09 -65.78 -0.20 2.63 16 17 H 0.11 2.60 7.63 -51.93 -0.40 2.21 16 18 N -0.69 -11.96 5.21 -52.52 -0.27 -12.23 16 19 C 0.59 10.69 5.21 -12.12 -0.06 10.63 16 20 O -0.50 -11.10 16.09 -13.06 -0.21 -11.31 16 21 C 0.11 1.51 6.55 -82.51 -0.54 0.97 16 22 N -0.41 -4.85 10.44 -9.31 -0.10 -4.95 16 23 C 0.08 0.55 11.23 -17.27 -0.19 0.35 16 24 C 0.06 0.34 11.23 -17.27 -0.19 0.14 16 25 N -0.41 -3.59 9.73 -9.31 -0.09 -3.68 16 26 C 0.06 0.71 6.78 -82.51 -0.56 0.15 16 27 C 0.57 7.48 8.06 -12.12 -0.10 7.38 16 28 N -0.83 -6.91 8.86 30.64 0.27 -6.64 16 29 O -0.49 -8.68 14.74 -13.06 -0.19 -8.88 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.06 1.80 7.29 -51.93 -0.38 1.42 16 34 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 35 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.39 5.66 8.53 -40.82 -0.35 5.31 16 39 H 0.19 0.50 8.06 -52.48 -0.42 0.07 16 40 H 0.18 0.22 8.06 -52.48 -0.42 -0.20 16 41 H 0.41 2.38 8.20 -40.82 -0.33 2.04 16 42 H 0.41 2.80 8.93 -40.82 -0.36 2.44 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -38.65 362.70 -6.75 -45.41 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.12 Total: 5.54 kcal Atomic # 6 Polarization: 26.18 SS G_CDS: -1.12 Total: 25.07 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -0.20 Total: -71.12 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.77 Total: -28.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.65 -6.75 -45.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082362138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.097 kcal (2) G-P(sol) polarization free energy of solvation -38.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds