Wall clock time and date at job start Tue Mar 31 2020 18:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00322 * 2 1 4 4 H 1.08998 * 110.77908 * 26.75770 * 3 2 1 5 5 C 1.54331 * 110.71952 * 263.52704 * 3 2 1 6 6 N 1.47018 * 107.26686 * 219.44060 * 5 3 2 7 7 C 1.36944 * 125.64824 * 178.89823 * 6 5 3 8 8 H 1.07999 * 120.00503 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99589 * 0.02659 * 7 6 5 10 10 N 1.31619 * 120.00011 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99977 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47047 * 89.99754 * 11 9 7 13 13 H 1.48498 * 109.47320 * 209.99931 * 11 9 7 14 14 H 1.48498 * 109.46915 * 329.99997 * 11 9 7 15 15 C 1.47464 * 108.72943 * 358.97441 * 6 5 3 16 16 C 1.54906 * 104.80858 * 24.06700 * 15 6 5 17 17 H 1.09001 * 111.00783 * 81.14135 * 16 15 6 18 18 N 1.46504 * 111.00765 * 204.95267 * 16 15 6 19 19 C 1.34783 * 120.00028 * 270.42211 * 18 16 15 20 20 O 1.21493 * 119.99539 * 359.97438 * 19 18 16 21 21 C 1.48304 * 119.99846 * 179.97438 * 19 18 16 22 22 N 1.32886 * 120.14479 * 283.76430 * 21 19 18 23 23 C 1.31837 * 119.99563 * 180.02562 * 22 21 19 24 24 C 1.39004 * 120.29175 * 359.97438 * 23 22 21 25 25 N 1.31835 * 120.29201 * 0.02562 * 24 23 22 26 26 C 1.32890 * 119.99496 * 359.97438 * 25 24 23 27 27 C 1.48302 * 120.14320 * 179.97438 * 26 25 24 28 28 N 1.34779 * 120.00170 * 354.65495 * 27 26 25 29 29 O 1.21501 * 119.99965 * 174.64497 * 27 26 25 30 30 H 1.08996 * 109.46866 * 60.00197 * 1 2 3 31 31 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47002 * 300.00127 * 1 2 3 33 33 H 1.09000 * 109.88125 * 338.85272 * 5 3 2 34 34 H 1.08999 * 109.88237 * 100.02147 * 5 3 2 35 35 H 0.97005 * 119.99656 * 180.02562 * 10 9 7 36 36 H 1.09003 * 110.34638 * 265.25573 * 15 6 5 37 37 H 1.08992 * 110.41085 * 142.91683 * 15 6 5 38 38 H 0.97003 * 120.00156 * 90.41952 * 18 16 15 39 39 H 1.08003 * 119.85373 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.85007 * 180.02562 * 24 23 22 41 41 H 0.97000 * 119.99587 * 359.97438 * 28 27 26 42 42 H 0.97003 * 120.00366 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0288 0.4588 5 6 2.3810 1.7380 -1.4343 6 7 3.6685 2.4438 -1.3582 7 6 4.3548 2.9690 -2.4205 8 1 5.2973 3.4711 -2.2595 9 6 3.8389 2.8561 -3.7042 10 7 2.6904 2.2438 -3.9004 11 14 4.7746 3.5731 -5.1533 12 1 5.6984 2.5481 -5.7019 13 1 3.8136 3.9880 -6.2067 14 1 5.5555 4.7532 -4.7031 15 6 4.0998 2.4912 0.0512 16 6 3.3817 1.2958 0.7255 17 1 3.9155 0.3638 0.5395 18 7 3.2168 1.5251 2.1631 19 6 4.1769 1.1307 3.0229 20 8 5.1788 0.5846 2.6058 21 6 4.0103 1.3635 4.4781 22 7 4.1917 2.5785 4.9846 23 6 4.0432 2.7819 6.2787 24 6 3.6966 1.7300 7.1187 25 7 3.5138 0.5200 6.6283 26 6 3.6604 0.3019 5.3256 27 6 3.4562 -1.0580 4.7705 28 7 3.2275 -2.0966 5.5986 29 8 3.4949 -1.2360 3.5693 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.4769 0.8600 -2.0732 34 1 1.6153 2.4052 -1.8299 35 1 2.3301 2.1645 -4.7976 36 1 3.7888 3.4291 0.5114 37 1 5.1810 2.3732 0.1220 38 1 2.4167 1.9609 2.4961 39 1 4.1908 3.7705 6.6880 40 1 3.5764 1.9048 8.1777 41 1 3.1969 -1.9545 6.5576 42 1 3.0936 -2.9861 5.2355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082362138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:05 Heat of formation + Delta-G solvation = -55.696968 kcal Electronic energy + Delta-G solvation = -29366.841481 eV Core-core repulsion = 25154.432201 eV Total energy + Delta-G solvation = -4212.409279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68907 -40.89647 -40.24752 -39.52965 -37.53411 -35.91686 -35.66668 -34.57087 -33.78315 -32.90677 -30.59884 -29.03798 -27.56671 -26.96410 -26.70069 -25.77650 -22.85210 -22.52750 -22.20212 -21.73429 -19.67622 -19.32785 -19.22979 -18.80628 -18.06731 -17.47592 -17.29712 -16.89733 -16.51557 -16.33640 -16.12240 -15.84078 -15.75845 -15.52184 -15.26329 -15.17946 -15.04303 -14.57282 -14.37190 -14.07499 -13.64315 -13.23588 -13.01078 -12.99781 -12.75673 -12.66037 -12.55540 -12.35418 -12.07527 -11.87800 -11.80411 -11.68111 -11.49606 -10.86689 -10.78262 -10.69190 -10.59617 -10.39326 -10.16067 -8.98447 -7.87471 -5.26269 -0.96918 -0.28146 1.35047 1.45340 1.48904 1.52164 1.57097 1.69711 2.04526 2.45818 2.47873 2.74133 2.85620 3.00570 3.20987 3.31818 3.48357 3.58800 3.81939 3.86830 3.89404 4.02396 4.09099 4.32335 4.34761 4.39773 4.54983 4.61209 4.79067 4.82472 4.92395 5.09030 5.27194 5.33900 5.40638 5.63560 5.68939 5.82291 6.11915 6.16237 6.28605 6.30698 6.41766 7.00179 7.04123 7.11740 7.67938 8.31442 9.22250 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003169 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.686798 B = 8834.323842 C = 9659.109927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.078 3.922 4 H 0.096 0.904 5 C 0.178 3.822 6 N -0.621 5.621 7 C -0.249 4.249 8 H 0.084 0.916 9 C -0.062 4.062 10 N -0.949 5.949 11 Si 0.985 3.015 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.134 3.866 16 C 0.154 3.846 17 H 0.070 0.930 18 N -0.684 5.684 19 C 0.592 3.408 20 O -0.558 6.558 21 C 0.078 3.922 22 N -0.437 5.437 23 C 0.094 3.906 24 C 0.088 3.912 25 N -0.410 5.410 26 C 0.047 3.953 27 C 0.560 3.440 28 N -0.807 5.807 29 O -0.549 6.549 30 H 0.039 0.961 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.027 0.973 35 H 0.249 0.751 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.411 0.589 39 H 0.235 0.765 40 H 0.243 0.757 41 H 0.423 0.577 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -1.185 30.540 31.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C 0.018 3.982 4 H 0.114 0.886 5 C 0.052 3.948 6 N -0.348 5.348 7 C -0.378 4.378 8 H 0.101 0.899 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.812 3.188 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.191 1.191 15 C 0.007 3.993 16 C 0.048 3.952 17 H 0.089 0.911 18 N -0.334 5.334 19 C 0.376 3.624 20 O -0.435 6.435 21 C -0.063 4.063 22 N -0.153 5.153 23 C -0.070 4.070 24 C -0.077 4.077 25 N -0.127 5.127 26 C -0.092 4.092 27 C 0.342 3.658 28 N -0.372 5.372 29 O -0.426 6.426 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.247 0.753 39 H 0.251 0.749 40 H 0.259 0.741 41 H 0.256 0.744 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.672 -1.777 29.145 29.570 hybrid contribution -0.059 0.171 -0.934 0.951 sum -4.731 -1.606 28.211 28.650 Atomic orbital electron populations 1.22981 0.79353 1.03848 1.00702 1.87932 1.21784 1.26932 1.94909 1.23492 0.93314 0.85270 0.96093 0.88634 1.21273 0.87243 0.94761 0.91496 1.44534 1.21966 1.66459 1.01876 1.19476 1.02772 1.29698 0.85836 0.89865 1.25713 0.98466 1.01368 0.99983 1.70169 1.20528 1.48283 1.20723 0.84998 0.77266 0.78064 0.78483 1.21506 1.21495 1.19130 1.21899 0.97167 0.95483 0.84760 1.21866 0.96181 0.98407 0.78739 0.91139 1.45385 1.22062 1.60422 1.05575 1.17785 0.82914 0.76857 0.84864 1.90781 1.30963 1.43313 1.78396 1.21606 0.98232 0.91516 0.94909 1.68624 1.10438 1.19151 1.17126 1.25200 0.90328 1.04097 0.87349 1.25124 0.91273 0.86570 1.04737 1.68491 1.09765 1.25130 1.09272 1.21809 1.01231 0.94551 0.91578 1.17986 0.77031 0.84844 0.85973 1.43337 1.72397 1.09965 1.11535 1.91010 1.51125 1.84394 1.16026 0.94178 0.88232 0.92102 0.96337 0.95512 0.94142 0.93753 0.94678 0.75315 0.74927 0.74056 0.74411 0.74997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.85 113.37 1.23 2.04 16 2 O -0.40 -16.28 10.43 -148.98 -1.55 -17.83 16 3 C 0.08 3.24 3.08 31.78 0.10 3.33 16 4 H 0.10 3.32 7.68 -2.39 -0.02 3.30 16 5 C 0.18 9.47 5.15 86.73 0.45 9.92 16 6 N -0.62 -34.74 3.40 -691.89 -2.35 -37.09 16 7 C -0.25 -14.89 10.28 84.03 0.86 -14.03 16 8 H 0.08 4.78 7.83 -2.91 -0.02 4.75 16 9 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 10 N -0.95 -58.92 10.31 21.65 0.22 -58.70 16 11 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 15 C 0.13 6.34 6.93 86.85 0.60 6.94 16 16 C 0.15 6.71 3.09 46.38 0.14 6.86 16 17 H 0.07 3.65 7.63 -2.39 -0.02 3.63 16 18 N -0.68 -24.26 5.21 -438.39 -2.29 -26.54 16 19 C 0.59 22.29 5.21 86.92 0.45 22.74 16 20 O -0.56 -26.34 16.09 13.93 0.22 -26.11 16 21 C 0.08 2.16 6.55 42.16 0.28 2.44 16 22 N -0.44 -9.39 10.44 -183.38 -1.91 -11.31 16 23 C 0.09 0.83 11.23 84.88 0.95 1.78 16 24 C 0.09 0.50 11.23 84.88 0.95 1.46 16 25 N -0.41 -5.66 9.73 -183.38 -1.78 -7.44 16 26 C 0.05 1.10 6.78 42.16 0.29 1.38 16 27 C 0.56 14.86 8.06 86.92 0.70 15.56 16 28 N -0.81 -12.60 8.86 -175.28 -1.55 -14.16 16 29 O -0.55 -20.64 14.74 13.90 0.20 -20.43 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 33 H 0.02 1.13 7.29 -2.39 -0.02 1.11 16 34 H 0.03 1.51 7.51 -2.39 -0.02 1.50 16 35 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.41 11.65 8.53 -92.71 -0.79 10.86 16 39 H 0.23 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.24 -1.45 8.06 -2.91 -0.02 -1.47 16 41 H 0.42 4.01 8.20 -92.71 -0.76 3.25 16 42 H 0.42 5.45 8.93 -92.71 -0.83 4.62 16 Total: -1.00 -93.71 362.70 -2.56 -96.27 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -1.27 Total: 16.53 kcal Atomic # 6 Polarization: 49.73 SS G_CDS: 7.47 Total: 57.20 kcal Atomic # 7 Polarization: -145.58 SS G_CDS: -9.66 Total: -155.24 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -1.12 Total: -64.38 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -93.71 -2.56 -96.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082362138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.569 kcal (2) G-P(sol) polarization free energy of solvation -93.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds