Wall clock time and date at job start Tue Mar 31 2020 18:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35722 * 116.99864 * 2 1 4 4 C 1.39359 * 120.36084 * 0.02562 * 3 2 1 5 5 N 1.31284 * 120.88350 * 179.71629 * 4 3 2 6 6 C 1.32885 * 121.72023 * 0.27884 * 5 4 3 7 7 C 1.47754 * 119.69226 * 179.97438 * 6 5 4 8 8 O 1.21567 * 120.00605 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99830 * 0.02562 * 7 6 5 10 10 C 1.46501 * 119.99999 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.55896 * 33.10507 * 10 9 7 12 12 C 1.54854 * 110.62469 * 155.99939 * 10 9 7 13 13 C 1.55842 * 103.44676 * 118.49304 * 12 10 9 14 14 H 1.08996 * 115.56644 * 158.81373 * 13 12 10 15 15 C 1.55843 * 105.06312 * 288.17515 * 13 12 10 16 16 C 1.54856 * 103.44597 * 71.82010 * 15 13 12 17 17 C 1.55835 * 103.44455 * 0.02562 * 16 15 13 18 18 H 1.09007 * 116.13213 * 159.14732 * 17 16 15 19 19 N 1.50237 * 101.05401 * 32.93515 * 17 16 15 20 20 C 1.36938 * 130.83989 * 126.03448 * 19 17 16 21 21 H 1.07997 * 119.99791 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00058 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99738 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46970 * 89.99805 * 24 22 20 26 26 H 1.48502 * 109.47117 * 210.00092 * 24 22 20 27 27 H 1.48503 * 109.47127 * 330.00125 * 24 22 20 28 28 C 1.39724 * 120.62495 * 359.97438 * 6 5 4 29 29 F 1.35098 * 120.46868 * 179.97438 * 28 6 5 30 30 C 1.38687 * 119.06325 * 0.02562 * 28 6 5 31 31 H 1.09000 * 109.46757 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46887 * 299.99057 * 1 2 3 33 33 H 1.08993 * 109.47699 * 59.99842 * 1 2 3 34 34 H 1.08012 * 119.55627 * 359.97438 * 4 3 2 35 35 H 0.96999 * 120.00126 * 359.97438 * 9 7 6 36 36 H 1.09004 * 110.62551 * 236.97910 * 12 10 9 37 37 H 1.08997 * 110.62891 * 359.84260 * 12 10 9 38 38 H 1.08998 * 110.63462 * 190.31468 * 15 13 12 39 39 H 1.09010 * 110.62909 * 313.33541 * 15 13 12 40 40 H 1.09000 * 110.62785 * 241.50759 * 16 15 13 41 41 H 1.09005 * 110.75749 * 118.55788 * 16 15 13 42 42 H 0.97003 * 119.99606 * 179.97438 * 23 22 20 43 43 H 1.08009 * 120.78496 * 180.02562 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 0.0005 5 7 1.8788 3.5580 0.0061 6 6 3.2021 3.6794 0.0060 7 6 3.8136 5.0245 0.0118 8 8 5.0235 5.1422 0.0112 9 7 3.0299 6.1210 0.0178 10 6 3.6362 7.4546 0.0242 11 1 4.5725 7.4521 -0.5338 12 6 2.6563 8.5021 -0.5595 13 6 2.4263 9.4845 0.6282 14 1 2.0679 10.4770 0.3551 15 6 1.5483 8.6934 1.6441 16 6 2.5282 7.6459 2.2277 17 6 3.8649 7.9472 1.4855 18 1 4.7735 7.5854 1.9669 19 7 3.7661 9.4356 1.3070 20 6 4.6309 10.4387 1.6552 21 1 5.5635 10.2016 2.1454 22 6 4.3087 11.7602 1.3782 23 7 3.1723 12.0490 0.7803 24 14 5.4880 13.1285 1.8539 25 1 6.4289 13.3829 0.7334 26 1 4.7195 14.3652 2.1455 27 1 6.2533 12.7251 3.0609 28 6 4.0208 2.5472 0.0003 29 9 5.3658 2.6743 -0.0004 30 6 3.4332 1.2910 -0.0057 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 0.2150 2.3247 0.0005 35 1 2.0645 6.0271 0.0179 36 1 3.1078 9.0210 -1.4051 37 1 1.7203 8.0288 -0.8562 38 1 1.1798 9.3537 2.4291 39 1 0.7197 8.2018 1.1342 40 1 2.1855 6.6349 2.0073 41 1 2.6464 7.7842 3.3024 42 1 2.9470 12.9726 0.5870 43 1 4.0395 0.3971 -0.0097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095506718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:22 Heat of formation + Delta-G solvation = -20.995165 kcal Electronic energy + Delta-G solvation = -29095.987366 eV Core-core repulsion = 24865.162908 eV Total energy + Delta-G solvation = -4230.824458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.16244 -41.16833 -39.93286 -38.78415 -37.81544 -33.96013 -32.77653 -32.24180 -30.94302 -29.23999 -28.97866 -28.20065 -27.42763 -24.99638 -24.14889 -23.41501 -21.50420 -20.86002 -19.53715 -19.00487 -18.57345 -18.34004 -17.77423 -16.86936 -16.66351 -16.51987 -15.88483 -15.67114 -15.26857 -14.90487 -14.81665 -14.72997 -14.17257 -13.87586 -13.69014 -13.63972 -13.35315 -13.01428 -12.58860 -12.28851 -12.23722 -12.02318 -11.71511 -11.45691 -11.01093 -10.87749 -10.85626 -10.80023 -10.39295 -10.17528 -10.07026 -9.94372 -9.85324 -9.69085 -9.32756 -9.21017 -8.99626 -8.89751 -8.44293 -6.87956 -5.69692 -3.07356 0.23896 0.56879 2.40473 2.61695 3.22473 3.42551 3.47572 3.49143 3.54574 3.76881 3.85506 4.01617 4.39119 4.47777 4.51754 4.58355 4.58980 4.89149 4.95541 5.22831 5.26016 5.40178 5.42074 5.61719 5.83673 5.88155 5.93652 6.02250 6.11604 6.18065 6.36134 6.38466 6.51064 6.58378 6.65991 6.72470 6.84842 6.99721 7.03493 7.19066 7.31356 7.55833 7.78090 7.88144 8.20197 8.45074 9.13704 9.76109 10.56754 11.39981 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.002711 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.269274 B =10326.299031 C =11043.724460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.127 3.873 4 C 0.009 3.991 5 N -0.391 5.391 6 C 0.014 3.986 7 C 0.564 3.436 8 O -0.526 6.526 9 N -0.688 5.688 10 C 0.124 3.876 11 H 0.086 0.914 12 C -0.141 4.141 13 C 0.154 3.846 14 H 0.155 0.845 15 C -0.136 4.136 16 C -0.131 4.131 17 C 0.128 3.872 18 H 0.086 0.914 19 N -0.589 5.589 20 C -0.208 4.208 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.924 5.924 24 Si 0.917 3.083 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.154 3.846 29 F -0.096 7.096 30 C -0.161 4.161 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.173 0.827 35 H 0.405 0.595 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.253 0.747 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 -23.950 -2.861 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.078 3.922 4 C -0.154 4.154 5 N -0.102 5.102 6 C -0.125 4.125 7 C 0.348 3.652 8 O -0.402 6.402 9 N -0.338 5.338 10 C 0.019 3.981 11 H 0.104 0.896 12 C -0.181 4.181 13 C 0.047 3.953 14 H 0.172 0.828 15 C -0.175 4.175 16 C -0.171 4.171 17 C 0.019 3.981 18 H 0.104 0.896 19 N -0.310 5.310 20 C -0.336 4.336 21 H 0.097 0.903 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.131 3.869 29 F -0.074 7.074 30 C -0.188 4.188 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.190 0.810 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.621 -22.910 -2.825 24.641 hybrid contribution 0.535 -0.240 0.251 0.638 sum -8.086 -23.150 -2.573 24.656 Atomic orbital electron populations 1.23270 0.76955 1.05001 1.02238 1.86065 1.22460 1.25499 1.87420 1.19999 0.92053 0.86097 0.94062 1.23065 1.01090 0.86436 1.04773 1.67503 1.09428 1.26772 1.06532 1.21476 0.89275 0.94492 1.07301 1.17501 0.86548 0.83043 0.78151 1.90865 1.13124 1.86099 1.50130 1.46060 1.10267 1.05583 1.71910 1.22768 0.96941 0.78849 0.99558 0.89589 1.23311 0.97041 0.97163 1.00584 1.23774 0.85118 0.98314 0.88050 0.82825 1.23033 0.96855 0.97539 1.00105 1.22914 0.97423 0.97426 0.99321 1.23212 0.95790 0.86202 0.92908 0.89600 1.46492 1.18387 0.98873 1.67223 1.19073 0.98266 0.84936 1.31368 0.90288 1.24697 0.97711 0.96914 1.01496 1.69443 1.22786 1.17589 1.47411 0.86023 0.79702 0.81470 0.78026 1.21664 1.21720 1.20778 1.18260 0.78871 0.92736 0.97002 1.91660 1.27121 1.96402 1.92239 1.20823 0.92901 0.97752 1.07328 0.87405 0.91728 0.91764 0.81042 0.75882 0.91537 0.92584 0.92656 0.93549 0.92951 0.93067 0.93595 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -2.07 10.50 -18.87 -0.20 -2.27 16 3 C 0.13 1.07 6.72 -38.87 -0.26 0.81 16 4 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -4.57 9.52 -9.63 -0.09 -4.66 16 6 C 0.01 0.20 6.75 -82.97 -0.56 -0.36 16 7 C 0.56 9.65 7.80 -12.37 -0.10 9.55 16 8 O -0.53 -10.78 14.97 5.31 0.08 -10.70 16 9 N -0.69 -11.27 3.69 -52.34 -0.19 -11.47 16 10 C 0.12 2.43 3.14 -65.41 -0.21 2.22 16 11 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 12 C -0.14 -2.75 6.20 -24.24 -0.15 -2.90 16 13 C 0.15 3.51 4.72 -62.78 -0.30 3.21 16 14 H 0.16 3.98 5.52 -51.93 -0.29 3.70 16 15 C -0.14 -2.67 6.44 -24.23 -0.16 -2.83 16 16 C -0.13 -2.51 6.32 -24.24 -0.15 -2.66 16 17 C 0.13 2.76 5.35 -62.78 -0.34 2.43 16 18 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 19 N -0.59 -14.89 2.99 -145.77 -0.44 -15.32 16 20 C -0.21 -5.81 10.59 -15.06 -0.16 -5.97 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.92 -26.35 10.47 55.49 0.58 -25.77 16 24 Si 0.92 22.24 29.55 -169.99 -5.02 17.21 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.15 1.97 7.31 -38.86 -0.28 1.69 16 29 F -0.10 -1.42 15.54 2.25 0.03 -1.39 16 30 C -0.16 -1.54 10.10 -39.12 -0.40 -1.94 16 31 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.13 7.67 -51.93 -0.40 -0.26 16 33 H 0.06 0.13 7.67 -51.93 -0.40 -0.27 16 34 H 0.17 0.87 6.31 -52.48 -0.33 0.54 16 35 H 0.40 5.88 7.23 -40.82 -0.30 5.58 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.93 7.39 -51.93 -0.38 0.55 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.78 7.82 -51.92 -0.41 0.37 16 40 H 0.05 0.89 6.39 -51.93 -0.33 0.55 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -32.50 354.00 -7.55 -40.05 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.31 Total: 5.23 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.33 Total: 3.74 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.14 Total: -57.22 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.12 Total: -12.97 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.03 Total: -1.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.50 -7.55 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095506718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.059 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds