Wall clock time and date at job start Tue Mar 31 2020 18:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35722 * 116.99864 * 2 1 4 4 C 1.39359 * 120.36084 * 0.02562 * 3 2 1 5 5 N 1.31284 * 120.88350 * 179.71629 * 4 3 2 6 6 C 1.32885 * 121.72023 * 0.27884 * 5 4 3 7 7 C 1.47754 * 119.69226 * 179.97438 * 6 5 4 8 8 O 1.21567 * 120.00605 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99830 * 0.02562 * 7 6 5 10 10 C 1.46501 * 119.99999 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.55896 * 33.10507 * 10 9 7 12 12 C 1.54854 * 110.62469 * 155.99939 * 10 9 7 13 13 C 1.55842 * 103.44676 * 118.49304 * 12 10 9 14 14 H 1.08996 * 115.56644 * 158.81373 * 13 12 10 15 15 C 1.55843 * 105.06312 * 288.17515 * 13 12 10 16 16 C 1.54856 * 103.44597 * 71.82010 * 15 13 12 17 17 C 1.55835 * 103.44455 * 0.02562 * 16 15 13 18 18 H 1.09007 * 116.13213 * 159.14732 * 17 16 15 19 19 N 1.50237 * 101.05401 * 32.93515 * 17 16 15 20 20 C 1.36938 * 130.83989 * 126.03448 * 19 17 16 21 21 H 1.07997 * 119.99791 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00058 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99738 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46970 * 89.99805 * 24 22 20 26 26 H 1.48502 * 109.47117 * 210.00092 * 24 22 20 27 27 H 1.48503 * 109.47127 * 330.00125 * 24 22 20 28 28 C 1.39724 * 120.62495 * 359.97438 * 6 5 4 29 29 F 1.35098 * 120.46868 * 179.97438 * 28 6 5 30 30 C 1.38687 * 119.06325 * 0.02562 * 28 6 5 31 31 H 1.09000 * 109.46757 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46887 * 299.99057 * 1 2 3 33 33 H 1.08993 * 109.47699 * 59.99842 * 1 2 3 34 34 H 1.08012 * 119.55627 * 359.97438 * 4 3 2 35 35 H 0.96999 * 120.00126 * 359.97438 * 9 7 6 36 36 H 1.09004 * 110.62551 * 236.97910 * 12 10 9 37 37 H 1.08997 * 110.62891 * 359.84260 * 12 10 9 38 38 H 1.08998 * 110.63462 * 190.31468 * 15 13 12 39 39 H 1.09010 * 110.62909 * 313.33541 * 15 13 12 40 40 H 1.09000 * 110.62785 * 241.50759 * 16 15 13 41 41 H 1.09005 * 110.75749 * 118.55788 * 16 15 13 42 42 H 0.97003 * 119.99606 * 179.97438 * 23 22 20 43 43 H 1.08009 * 120.78496 * 180.02562 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 0.0005 5 7 1.8788 3.5580 0.0061 6 6 3.2021 3.6794 0.0060 7 6 3.8136 5.0245 0.0118 8 8 5.0235 5.1422 0.0112 9 7 3.0299 6.1210 0.0178 10 6 3.6362 7.4546 0.0242 11 1 4.5725 7.4521 -0.5338 12 6 2.6563 8.5021 -0.5595 13 6 2.4263 9.4845 0.6282 14 1 2.0679 10.4770 0.3551 15 6 1.5483 8.6934 1.6441 16 6 2.5282 7.6459 2.2277 17 6 3.8649 7.9472 1.4855 18 1 4.7735 7.5854 1.9669 19 7 3.7661 9.4356 1.3070 20 6 4.6309 10.4387 1.6552 21 1 5.5635 10.2016 2.1454 22 6 4.3087 11.7602 1.3782 23 7 3.1723 12.0490 0.7803 24 14 5.4880 13.1285 1.8539 25 1 6.4289 13.3829 0.7334 26 1 4.7195 14.3652 2.1455 27 1 6.2533 12.7251 3.0609 28 6 4.0208 2.5472 0.0003 29 9 5.3658 2.6743 -0.0004 30 6 3.4332 1.2910 -0.0057 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 0.2150 2.3247 0.0005 35 1 2.0645 6.0271 0.0179 36 1 3.1078 9.0210 -1.4051 37 1 1.7203 8.0288 -0.8562 38 1 1.1798 9.3537 2.4291 39 1 0.7197 8.2018 1.1342 40 1 2.1855 6.6349 2.0073 41 1 2.6464 7.7842 3.3024 42 1 2.9470 12.9726 0.5870 43 1 4.0395 0.3971 -0.0097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095506718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:21 Heat of formation + Delta-G solvation = -42.788304 kcal Electronic energy + Delta-G solvation = -29096.932387 eV Core-core repulsion = 24865.162908 eV Total energy + Delta-G solvation = -4231.769479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.16186 -42.00399 -41.31143 -39.94048 -38.86432 -35.52883 -34.26998 -33.45859 -31.87265 -31.00612 -30.66157 -29.22530 -28.38985 -26.32435 -25.62893 -24.27954 -22.92518 -22.25471 -21.31432 -20.20100 -19.67914 -19.37460 -18.97271 -18.50769 -17.40754 -17.34890 -17.05901 -16.77898 -16.61628 -16.39601 -16.05873 -15.88344 -15.63747 -15.39860 -14.88141 -14.38990 -14.28308 -14.10275 -13.93640 -13.81321 -13.48015 -13.22097 -12.90758 -12.88404 -12.77903 -12.61486 -12.48658 -12.39657 -11.99550 -11.90756 -11.59467 -11.44280 -11.13878 -11.03586 -10.81099 -10.77837 -10.72812 -10.08891 -9.67119 -8.86033 -7.79226 -5.18640 -0.63838 -0.18682 1.46567 1.48181 1.56141 1.57543 1.82491 2.03959 2.49844 2.52924 2.90457 3.00102 3.33964 3.36112 3.47002 3.61841 3.75650 3.93284 4.03160 4.09896 4.13645 4.38784 4.43206 4.43466 4.46521 4.49117 4.60054 4.69849 4.72272 4.80445 4.85216 4.95791 5.06922 5.14151 5.14745 5.20207 5.32147 5.44786 5.53460 5.72104 5.88883 5.98946 6.25986 6.31764 6.61032 7.05562 7.16353 7.68839 8.55160 9.27803 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.002711 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.269274 B =10326.299031 C =11043.724460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.148 3.852 4 C 0.022 3.978 5 N -0.397 5.397 6 C -0.014 4.014 7 C 0.563 3.437 8 O -0.571 6.571 9 N -0.676 5.676 10 C 0.142 3.858 11 H 0.057 0.943 12 C -0.126 4.126 13 C 0.140 3.860 14 H 0.124 0.876 15 C -0.124 4.124 16 C -0.116 4.116 17 C 0.118 3.882 18 H 0.067 0.933 19 N -0.616 5.616 20 C -0.226 4.226 21 H 0.071 0.929 22 C -0.063 4.063 23 N -0.943 5.943 24 Si 0.977 3.023 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.137 3.863 29 F -0.118 7.118 30 C -0.160 4.160 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.214 0.786 35 H 0.418 0.582 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.250 0.750 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -26.883 -2.942 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.217 6.217 3 C 0.097 3.903 4 C -0.143 4.143 5 N -0.109 5.109 6 C -0.151 4.151 7 C 0.349 3.651 8 O -0.450 6.450 9 N -0.328 5.328 10 C 0.035 3.965 11 H 0.075 0.925 12 C -0.166 4.166 13 C 0.034 3.966 14 H 0.141 0.859 15 C -0.163 4.163 16 C -0.156 4.156 17 C 0.010 3.990 18 H 0.085 0.915 19 N -0.338 5.338 20 C -0.355 4.355 21 H 0.089 0.911 22 C -0.255 4.255 23 N -0.593 5.593 24 Si 0.806 3.194 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.114 3.886 29 F -0.096 7.096 30 C -0.186 4.186 31 H 0.145 0.855 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.519 -25.888 -2.906 28.484 hybrid contribution 1.286 0.423 0.262 1.379 sum -10.233 -25.465 -2.644 27.571 Atomic orbital electron populations 1.23695 0.74510 1.06959 1.03702 1.86099 1.24879 1.24368 1.86401 1.20021 0.91622 0.86918 0.91703 1.23723 1.02790 0.85343 1.02396 1.67463 1.08035 1.28385 1.06974 1.20874 0.90482 0.92662 1.11062 1.17995 0.86058 0.84344 0.76703 1.90836 1.15182 1.86994 1.51964 1.45778 1.10759 1.04206 1.72012 1.22240 0.96135 0.80549 0.97546 0.92465 1.23143 0.98520 0.96276 0.98640 1.23702 0.84756 0.98164 0.89972 0.85911 1.22925 0.97391 0.97015 0.98943 1.22800 0.95529 0.98783 0.98461 1.23335 0.96548 0.84603 0.94531 0.91461 1.46732 1.19195 0.99914 1.67968 1.19306 0.98654 0.86227 1.31264 0.91126 1.25416 0.99350 0.98710 1.02068 1.69664 1.23888 1.17493 1.48235 0.85095 0.77862 0.78764 0.77687 1.21664 1.21612 1.20191 1.18478 0.78041 0.93794 0.98259 1.91602 1.28707 1.96604 1.92671 1.20983 0.93937 0.97019 1.06635 0.85476 0.90256 0.90189 0.77013 0.74288 0.93272 0.88686 0.94295 0.89501 0.90014 0.93762 0.94066 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.82 10.50 -90.45 -0.95 -3.77 16 3 C 0.15 1.92 6.72 22.73 0.15 2.07 16 4 C 0.02 0.27 10.21 85.04 0.87 1.14 16 5 N -0.40 -8.09 9.52 -184.39 -1.76 -9.84 16 6 C -0.01 -0.36 6.75 41.86 0.28 -0.08 16 7 C 0.56 19.37 7.80 86.76 0.68 20.05 16 8 O -0.57 -24.43 14.97 -3.93 -0.06 -24.49 16 9 N -0.68 -21.53 3.69 -437.77 -1.62 -23.15 16 10 C 0.14 5.61 3.14 46.63 0.15 5.75 16 11 H 0.06 2.60 7.58 -2.39 -0.02 2.58 16 12 C -0.13 -4.86 6.20 32.21 0.20 -4.66 16 13 C 0.14 6.43 4.72 46.22 0.22 6.65 16 14 H 0.12 6.53 5.52 -2.39 -0.01 6.52 16 15 C -0.12 -4.67 6.44 32.21 0.21 -4.46 16 16 C -0.12 -4.31 6.32 32.21 0.20 -4.11 16 17 C 0.12 5.21 5.35 46.24 0.25 5.46 16 18 H 0.07 3.16 8.14 -2.38 -0.02 3.15 16 19 N -0.62 -32.12 2.99 -615.10 -1.84 -33.96 16 20 C -0.23 -13.05 10.59 84.03 0.89 -12.16 16 21 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 23 N -0.94 -55.34 10.47 21.65 0.23 -55.11 16 24 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 C 0.14 3.43 7.31 22.74 0.17 3.60 16 29 F -0.12 -3.60 15.54 44.97 0.70 -2.90 16 30 C -0.16 -2.69 10.10 22.57 0.23 -2.46 16 31 H 0.13 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.08 -0.11 7.67 -2.38 -0.02 -0.13 16 33 H 0.08 -0.13 7.67 -2.39 -0.02 -0.15 16 34 H 0.21 0.85 6.31 -2.90 -0.02 0.84 16 35 H 0.42 10.99 7.23 -92.71 -0.67 10.32 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.09 2.89 7.39 -2.39 -0.02 2.87 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 2.58 7.82 -2.38 -0.02 2.56 16 40 H 0.08 2.54 6.39 -2.39 -0.02 2.53 16 41 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -75.35 354.00 3.20 -72.15 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.40 Total: 17.37 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 6.07 Total: 14.77 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -4.98 Total: -122.06 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.01 Total: -28.25 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.70 Total: -2.90 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -75.35 3.20 -72.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095506718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.363 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds