Wall clock time and date at job start Tue Mar 31 2020 18:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36361 * 119.29606 * 2 1 4 4 C 1.36473 * 119.48948 * 180.02562 * 3 2 1 5 5 C 1.48136 * 120.85230 * 180.02562 * 4 3 2 6 6 N 1.30906 * 126.42527 * 359.68733 * 5 4 3 7 7 O 1.21290 * 110.06794 * 179.80562 * 6 5 4 8 8 C 1.33675 * 110.05531 * 0.46295 * 7 6 5 9 9 C 1.50693 * 126.42402 * 179.71120 * 8 7 6 10 10 H 1.09007 * 109.47188 * 165.00458 * 9 8 7 11 11 N 1.46903 * 109.47276 * 45.00239 * 9 8 7 12 12 C 1.53002 * 109.47355 * 284.99743 * 9 8 7 13 13 C 1.52997 * 109.47317 * 185.00034 * 12 9 8 14 14 C 1.50700 * 109.47197 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99998 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99602 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46999 * 90.00484 * 18 16 14 20 20 H 1.48505 * 109.46703 * 210.00073 * 18 16 14 21 21 H 1.48497 * 109.47067 * 330.00029 * 18 16 14 22 22 N 1.30971 * 107.15276 * 359.71302 * 8 7 6 23 23 C 1.46916 * 118.29819 * 359.97438 * 4 3 2 24 24 O 1.21724 * 120.67470 * 180.02562 * 23 4 3 25 25 N 1.34967 * 118.64862 * 0.02562 * 23 4 3 26 26 C 1.46493 * 119.85402 * 180.02562 * 25 23 4 27 27 C 1.34285 * 119.30366 * 179.73091 * 2 1 3 28 28 O 1.21572 * 119.06215 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46813 * 240.00099 * 1 2 3 31 31 H 1.09004 * 109.47041 * 120.00226 * 1 2 3 32 32 H 1.08002 * 120.25729 * 0.02562 * 3 2 1 33 33 H 1.00900 * 111.00150 * 176.04175 * 11 9 8 34 34 H 1.00899 * 110.99859 * 299.99960 * 11 9 8 35 35 H 1.08995 * 109.47435 * 305.00140 * 12 9 8 36 36 H 1.09000 * 109.46717 * 65.00450 * 12 9 8 37 37 H 1.09007 * 109.47229 * 300.00206 * 13 12 9 38 38 H 1.08995 * 109.47483 * 60.00124 * 13 12 9 39 39 H 0.97002 * 120.00039 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47077 * 0.02562 * 26 25 23 41 41 H 1.09002 * 109.47128 * 120.00202 * 26 25 23 42 42 H 1.08997 * 109.47348 * 240.00206 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1322 1.1892 0.0000 4 6 3.4970 1.1938 -0.0005 5 6 4.2523 2.4681 0.0000 6 7 3.7426 3.6739 -0.0047 7 8 4.6299 4.5008 0.0012 8 6 5.8214 3.8948 0.0004 9 6 7.1686 4.5699 0.0003 10 1 7.9383 3.8450 0.2655 11 7 7.1680 5.6642 0.9804 12 6 7.4569 5.1330 -1.3928 13 6 8.8743 5.7080 -1.4273 14 6 9.1579 6.2632 -2.7992 15 1 8.4030 6.2108 -3.5697 16 6 10.3813 6.8381 -3.0709 17 7 11.3009 6.9015 -2.1328 18 14 10.7332 7.5257 -4.7717 19 1 10.3300 8.9540 -4.8214 20 1 12.1852 7.4108 -5.0614 21 1 9.9642 6.7587 -5.7845 22 7 5.5983 2.6042 -0.0004 23 6 4.1978 -0.0974 -0.0005 24 8 5.4141 -0.1438 -0.0005 25 7 3.4655 -1.2311 -0.0005 26 6 4.1370 -2.5331 0.0001 27 6 2.1222 -1.1710 0.0055 28 8 1.4846 -2.2061 0.0108 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 -0.5139 -0.8900 32 1 1.5849 2.1203 0.0004 33 1 8.0797 6.0915 1.0459 34 1 6.4626 6.3499 0.7563 35 1 7.3699 4.3366 -2.1318 36 1 6.7395 5.9211 -1.6217 37 1 8.9613 6.5046 -0.6882 38 1 9.5917 4.9201 -1.1983 39 1 12.1615 7.3063 -2.3238 40 1 5.2169 -2.3848 0.0009 41 1 3.8466 -3.0913 0.8901 42 1 3.8474 -3.0918 -0.8898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118102590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:58 Heat of formation + Delta-G solvation = 36.667037 kcal Electronic energy + Delta-G solvation = -28236.740968 eV Core-core repulsion = 24028.336893 eV Total energy + Delta-G solvation = -4208.404075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.35510 -42.64300 -39.35887 -37.91309 -36.82092 -35.76541 -35.51352 -33.33488 -32.71490 -31.06946 -30.03627 -28.76679 -27.45309 -26.61745 -25.15278 -24.41695 -23.83787 -23.06182 -21.46145 -20.22490 -19.55985 -18.21525 -17.90963 -17.59144 -17.55686 -17.01795 -16.48590 -16.01758 -15.85166 -15.43818 -15.26271 -14.88976 -14.52601 -14.28217 -14.09809 -14.06501 -13.47700 -13.36760 -13.30114 -13.08906 -12.74498 -12.56627 -12.36507 -12.19692 -11.78402 -11.53908 -11.39010 -11.11965 -10.96143 -10.89294 -10.64989 -10.44785 -10.27174 -10.12610 -10.01454 -9.60293 -9.27419 -8.74638 -8.50026 -8.42803 -6.09222 -4.12206 0.24991 1.30761 1.36211 1.55077 2.37616 2.41598 2.96575 3.13715 3.27544 3.30470 3.34557 3.37913 3.72818 4.01096 4.22071 4.35414 4.39568 4.67473 4.78734 4.82272 4.98124 5.00725 5.01418 5.07480 5.23818 5.27317 5.38145 5.44197 5.51577 5.57503 5.71132 5.84975 6.10886 6.31391 6.44399 6.70949 6.80284 7.06493 7.22839 7.46698 7.50473 7.59715 7.65170 7.87672 8.24399 8.29149 8.93233 9.52744 11.01764 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.002270 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.748477 B =12333.905640 C =12746.188888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.531 5.531 3 C 0.204 3.796 4 C -0.177 4.177 5 C 0.237 3.763 6 N -0.394 5.394 7 O 0.080 5.920 8 C 0.220 3.780 9 C 0.180 3.820 10 H 0.125 0.875 11 N -0.840 5.840 12 C -0.142 4.142 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.454 5.454 23 C 0.553 3.447 24 O -0.459 6.459 25 N -0.555 5.555 26 C 0.081 3.919 27 C 0.693 3.307 28 O -0.534 6.534 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.188 0.812 33 H 0.366 0.634 34 H 0.344 0.656 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.396 -12.989 6.800 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.250 5.250 3 C 0.076 3.924 4 C -0.189 4.189 5 C -0.033 4.033 6 N -0.104 5.104 7 O 0.022 5.978 8 C -0.002 4.002 9 C 0.066 3.934 10 H 0.142 0.858 11 N -0.373 5.373 12 C -0.183 4.183 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 N -0.186 5.186 23 C 0.344 3.656 24 O -0.328 6.328 25 N -0.301 5.301 26 C -0.059 4.059 27 C 0.396 3.604 28 O -0.407 6.407 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.205 0.795 33 H 0.184 0.816 34 H 0.156 0.844 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.825 -14.520 7.376 28.040 hybrid contribution 0.575 1.198 -1.792 2.231 sum -22.250 -13.322 5.584 26.528 Atomic orbital electron populations 1.22170 0.73835 1.04853 1.05029 1.44476 1.09894 1.03934 1.66677 1.22337 0.92176 0.90163 0.87746 1.18307 0.90404 0.89524 1.20695 1.22625 0.87621 0.91246 1.01838 1.74815 1.13239 0.99180 1.23140 1.85207 1.13097 1.33773 1.65738 1.29160 0.91107 0.87052 0.92841 1.20261 0.84522 0.94242 0.94393 0.85766 1.58974 1.12953 1.15380 1.49993 1.22534 1.02289 1.00375 0.93067 1.19105 0.88513 0.95934 0.97671 1.21142 0.99441 1.38602 0.97020 0.92644 1.25002 0.96213 0.95971 0.97094 1.69943 1.05667 1.44608 1.32895 0.86574 0.77491 0.79355 0.84487 1.20616 1.21144 1.19884 1.72259 1.11985 1.14422 1.19941 1.18023 0.87675 0.82861 0.77068 1.90979 1.11695 1.85806 1.44313 1.46254 1.05612 1.10629 1.67562 1.21950 0.99559 0.80561 1.03870 1.15754 0.81899 0.83918 0.78809 1.91023 1.65261 1.30817 1.53599 0.88376 0.89615 0.89610 0.79539 0.81622 0.84404 0.91920 0.92195 0.96181 0.95927 0.92835 0.87662 0.90189 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 9.96 59.85 0.60 0.87 16 2 N -0.53 -3.89 2.99 -128.82 -0.39 -4.28 16 3 C 0.20 1.62 10.04 -16.17 -0.16 1.46 16 4 C -0.18 -2.20 6.03 -102.96 -0.62 -2.82 16 5 C 0.24 3.65 7.81 -156.07 -1.22 2.43 16 6 N -0.39 -5.78 11.89 30.99 0.37 -5.41 16 7 O 0.08 1.24 11.27 18.02 0.20 1.44 16 8 C 0.22 3.64 7.30 -12.98 -0.09 3.54 16 9 C 0.18 2.95 3.35 -68.87 -0.23 2.72 16 10 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 11 N -0.84 -12.26 9.17 -5.65 -0.05 -12.31 16 12 C -0.14 -2.70 4.78 -26.73 -0.13 -2.83 16 13 C 0.02 0.59 4.74 -27.88 -0.13 0.45 16 14 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 N -0.45 -8.08 10.47 -9.86 -0.10 -8.19 16 23 C 0.55 7.53 7.63 -12.66 -0.10 7.44 16 24 O -0.46 -7.81 15.25 5.17 0.08 -7.73 16 25 N -0.56 -6.15 2.96 -129.70 -0.38 -6.53 16 26 C 0.08 0.71 9.98 59.84 0.60 1.31 16 27 C 0.69 7.03 8.10 -87.64 -0.71 6.32 16 28 O -0.53 -6.23 16.12 5.30 0.09 -6.15 16 29 H 0.10 0.03 7.72 -51.93 -0.40 -0.37 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.19 0.94 7.66 -52.49 -0.40 0.54 16 33 H 0.37 5.43 7.55 -39.29 -0.30 5.13 16 34 H 0.34 4.57 8.97 -39.29 -0.35 4.22 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.47 6.87 -51.92 -0.36 0.12 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.10 0.96 6.92 -51.93 -0.36 0.60 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -34.78 365.42 -6.67 -41.45 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.09 Total: 3.07 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.61 Total: 7.98 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.18 Total: -61.67 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.37 Total: -12.44 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.78 -6.67 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118102590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.113 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds