Wall clock time and date at job start Tue Mar 31 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36361 * 119.29606 * 2 1 4 4 C 1.36473 * 119.48948 * 180.02562 * 3 2 1 5 5 C 1.48136 * 120.85230 * 180.02562 * 4 3 2 6 6 N 1.30906 * 126.42527 * 359.68733 * 5 4 3 7 7 O 1.21290 * 110.06794 * 179.80562 * 6 5 4 8 8 C 1.33675 * 110.05531 * 0.46295 * 7 6 5 9 9 C 1.50693 * 126.42402 * 179.71120 * 8 7 6 10 10 H 1.09007 * 109.47188 * 165.00458 * 9 8 7 11 11 N 1.46903 * 109.47276 * 45.00239 * 9 8 7 12 12 C 1.53002 * 109.47355 * 284.99743 * 9 8 7 13 13 C 1.52997 * 109.47317 * 185.00034 * 12 9 8 14 14 C 1.50700 * 109.47197 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99998 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99602 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46999 * 90.00484 * 18 16 14 20 20 H 1.48505 * 109.46703 * 210.00073 * 18 16 14 21 21 H 1.48497 * 109.47067 * 330.00029 * 18 16 14 22 22 N 1.30971 * 107.15276 * 359.71302 * 8 7 6 23 23 C 1.46916 * 118.29819 * 359.97438 * 4 3 2 24 24 O 1.21724 * 120.67470 * 180.02562 * 23 4 3 25 25 N 1.34967 * 118.64862 * 0.02562 * 23 4 3 26 26 C 1.46493 * 119.85402 * 180.02562 * 25 23 4 27 27 C 1.34285 * 119.30366 * 179.73091 * 2 1 3 28 28 O 1.21572 * 119.06215 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46813 * 240.00099 * 1 2 3 31 31 H 1.09004 * 109.47041 * 120.00226 * 1 2 3 32 32 H 1.08002 * 120.25729 * 0.02562 * 3 2 1 33 33 H 1.00900 * 111.00150 * 176.04175 * 11 9 8 34 34 H 1.00899 * 110.99859 * 299.99960 * 11 9 8 35 35 H 1.08995 * 109.47435 * 305.00140 * 12 9 8 36 36 H 1.09000 * 109.46717 * 65.00450 * 12 9 8 37 37 H 1.09007 * 109.47229 * 300.00206 * 13 12 9 38 38 H 1.08995 * 109.47483 * 60.00124 * 13 12 9 39 39 H 0.97002 * 120.00039 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47077 * 0.02562 * 26 25 23 41 41 H 1.09002 * 109.47128 * 120.00202 * 26 25 23 42 42 H 1.08997 * 109.47348 * 240.00206 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1322 1.1892 0.0000 4 6 3.4970 1.1938 -0.0005 5 6 4.2523 2.4681 0.0000 6 7 3.7426 3.6739 -0.0047 7 8 4.6299 4.5008 0.0012 8 6 5.8214 3.8948 0.0004 9 6 7.1686 4.5699 0.0003 10 1 7.9383 3.8450 0.2655 11 7 7.1680 5.6642 0.9804 12 6 7.4569 5.1330 -1.3928 13 6 8.8743 5.7080 -1.4273 14 6 9.1579 6.2632 -2.7992 15 1 8.4030 6.2108 -3.5697 16 6 10.3813 6.8381 -3.0709 17 7 11.3009 6.9015 -2.1328 18 14 10.7332 7.5257 -4.7717 19 1 10.3300 8.9540 -4.8214 20 1 12.1852 7.4108 -5.0614 21 1 9.9642 6.7587 -5.7845 22 7 5.5983 2.6042 -0.0004 23 6 4.1978 -0.0974 -0.0005 24 8 5.4141 -0.1438 -0.0005 25 7 3.4655 -1.2311 -0.0005 26 6 4.1370 -2.5331 0.0001 27 6 2.1222 -1.1710 0.0055 28 8 1.4846 -2.2061 0.0108 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 -0.5139 -0.8900 32 1 1.5849 2.1203 0.0004 33 1 8.0797 6.0915 1.0459 34 1 6.4626 6.3499 0.7563 35 1 7.3699 4.3366 -2.1318 36 1 6.7395 5.9211 -1.6217 37 1 8.9613 6.5046 -0.6882 38 1 9.5917 4.9201 -1.1983 39 1 12.1615 7.3063 -2.3238 40 1 5.2169 -2.3848 0.0009 41 1 3.8466 -3.0913 0.8901 42 1 3.8474 -3.0918 -0.8898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118102590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:57 Heat of formation + Delta-G solvation = 10.138532 kcal Electronic energy + Delta-G solvation = -28237.891330 eV Core-core repulsion = 24028.336893 eV Total energy + Delta-G solvation = -4209.554438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.52159 -43.46294 -40.29061 -38.70620 -38.25210 -36.88534 -36.47394 -35.12787 -33.91629 -32.15200 -31.65232 -29.49170 -28.24818 -27.99524 -26.12458 -25.91075 -24.86684 -24.13915 -22.87298 -21.64549 -20.41079 -19.20566 -19.07690 -18.61542 -18.38855 -18.37159 -17.91092 -17.29373 -16.77367 -16.45212 -16.31434 -15.97558 -15.93025 -15.50733 -15.09248 -15.07329 -14.91947 -14.65670 -14.11413 -13.93037 -13.92693 -13.45039 -13.34013 -13.32612 -13.31155 -12.95315 -12.71744 -12.49936 -12.38820 -12.25401 -12.09084 -11.79785 -11.59571 -11.48979 -11.36446 -11.18844 -11.01314 -10.53379 -9.82470 -9.58471 -8.19349 -6.28948 -0.57902 0.14702 0.59259 0.65877 1.31505 1.41421 1.42536 1.52760 1.55921 1.70390 2.21755 2.32143 2.42170 2.74582 3.11343 3.14857 3.47369 3.70683 3.78686 3.98957 4.03435 4.15241 4.21535 4.25297 4.33277 4.39978 4.45333 4.51996 4.67915 4.69874 4.80236 4.81819 4.84704 4.93744 5.07768 5.11653 5.49114 5.67991 5.82619 5.89085 5.98355 6.21401 6.23205 6.46347 6.61700 6.86073 7.04526 7.39811 8.91573 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.002270 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.748477 B =12333.905640 C =12746.188888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.519 5.519 3 C 0.262 3.738 4 C -0.230 4.230 5 C 0.241 3.759 6 N -0.387 5.387 7 O 0.078 5.922 8 C 0.218 3.782 9 C 0.193 3.807 10 H 0.115 0.885 11 N -0.831 5.831 12 C -0.126 4.126 13 C 0.030 3.970 14 C -0.544 4.544 15 H 0.055 0.945 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.958 3.042 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.269 1.269 22 N -0.488 5.488 23 C 0.551 3.449 24 O -0.511 6.511 25 N -0.557 5.557 26 C 0.077 3.923 27 C 0.690 3.310 28 O -0.547 6.547 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.228 0.772 33 H 0.366 0.634 34 H 0.354 0.646 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.018 0.982 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.550 -12.597 6.412 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.236 5.236 3 C 0.131 3.869 4 C -0.242 4.242 5 C -0.029 4.029 6 N -0.099 5.099 7 O 0.022 5.978 8 C -0.003 4.003 9 C 0.079 3.921 10 H 0.133 0.867 11 N -0.365 5.365 12 C -0.166 4.166 13 C -0.007 4.007 14 C -0.582 4.582 15 H 0.074 0.926 16 C -0.193 4.193 17 N -0.566 5.566 18 Si 0.783 3.217 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.194 1.194 22 N -0.221 5.221 23 C 0.344 3.656 24 O -0.383 6.383 25 N -0.301 5.301 26 C -0.063 4.063 27 C 0.393 3.607 28 O -0.421 6.421 29 H 0.157 0.843 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.244 0.756 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.015 0.985 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.053 -14.133 6.990 30.452 hybrid contribution 1.355 0.950 -1.639 2.329 sum -24.697 -13.183 5.352 28.502 Atomic orbital electron populations 1.22638 0.70813 1.07821 1.05596 1.44828 1.11513 1.02908 1.64306 1.22785 0.90707 0.91372 0.82031 1.18206 0.91915 0.87879 1.26249 1.22996 0.86937 0.92357 1.00621 1.74756 1.12593 0.98711 1.23803 1.85186 1.12765 1.33905 1.65959 1.28891 0.91234 0.86989 0.93223 1.19910 0.84691 0.94476 0.93050 0.86742 1.58948 1.13236 1.15327 1.48987 1.22270 0.99673 1.00099 0.94564 1.18969 0.90576 0.95008 0.96189 1.21596 0.99629 1.38493 0.98446 0.92641 1.25843 0.96154 0.96418 1.00885 1.70054 1.06089 1.45568 1.34856 0.85552 0.77243 0.78969 0.79920 1.19588 1.20952 1.19354 1.72258 1.13911 1.15021 1.20898 1.18295 0.87309 0.83813 0.76182 1.90945 1.13631 1.86499 1.47256 1.46349 1.06190 1.10685 1.66840 1.22080 0.99088 0.80063 1.05093 1.15921 0.81441 0.84682 0.78662 1.91023 1.65312 1.31549 1.54201 0.84330 0.89027 0.89132 0.75562 0.81688 0.83256 0.93088 0.91162 0.96419 0.98516 0.92734 0.88595 0.88857 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 9.96 127.77 1.27 1.43 16 2 N -0.52 -5.85 2.99 -680.00 -2.03 -7.88 16 3 C 0.26 3.26 10.04 83.58 0.84 4.10 16 4 C -0.23 -5.46 6.03 -18.79 -0.11 -5.57 16 5 C 0.24 7.26 7.81 137.15 1.07 8.33 16 6 N -0.39 -10.74 11.89 -58.91 -0.70 -11.44 16 7 O 0.08 2.33 11.27 74.56 0.84 3.17 16 8 C 0.22 7.23 7.30 88.35 0.64 7.88 16 9 C 0.19 6.42 3.35 44.17 0.15 6.57 16 10 H 0.11 4.05 8.14 -2.38 -0.02 4.03 16 11 N -0.83 -24.07 9.17 -171.80 -1.58 -25.65 16 12 C -0.13 -4.82 4.78 30.59 0.15 -4.68 16 13 C 0.03 1.44 4.74 29.85 0.14 1.58 16 14 C -0.54 -29.60 9.11 25.60 0.23 -29.36 16 15 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.01 0.31 5.46 84.66 0.46 0.77 16 17 N -0.93 -54.01 13.29 21.45 0.28 -53.72 16 18 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 N -0.49 -17.67 10.47 -302.33 -3.17 -20.84 16 23 C 0.55 15.19 7.63 86.49 0.66 15.85 16 24 O -0.51 -18.30 15.25 -4.42 -0.07 -18.36 16 25 N -0.56 -12.06 2.96 -800.80 -2.37 -14.43 16 26 C 0.08 1.36 9.98 127.77 1.27 2.63 16 27 C 0.69 12.66 8.10 179.31 1.45 14.11 16 28 O -0.55 -11.68 16.12 -3.94 -0.06 -11.74 16 29 H 0.14 -0.75 7.72 -2.39 -0.02 -0.76 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.23 1.04 7.66 -2.91 -0.02 1.02 16 33 H 0.37 10.87 7.55 -89.69 -0.68 10.19 16 34 H 0.35 9.08 8.97 -89.70 -0.80 8.27 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.02 0.85 6.87 -2.38 -0.02 0.83 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.10 1.88 6.92 -2.39 -0.02 1.87 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.46 365.42 1.02 -76.43 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.38 Total: 15.48 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 8.23 Total: 23.64 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -9.56 Total: -133.96 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: 0.71 Total: -26.93 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -77.46 1.02 -76.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118102590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.572 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds