Wall clock time and date at job start Tue Mar 31 2020 18:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45195 * 109.47275 * 2 1 4 4 C 1.34225 * 117.00486 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99736 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00474 * 179.97438 * 4 3 2 7 7 N 1.46895 * 109.47423 * 174.29558 * 6 4 3 8 8 C 1.46897 * 111.00102 * 287.80086 * 7 6 4 9 9 C 1.50703 * 109.47057 * 294.85915 * 8 7 6 10 10 H 1.08002 * 119.99795 * 5.36437 * 9 8 7 11 11 C 1.37868 * 119.99900 * 185.35987 * 9 8 7 12 12 N 1.31511 * 120.00274 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99816 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47108 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47122 * 120.00052 * 13 11 9 16 16 H 1.48505 * 109.46785 * 239.99919 * 13 11 9 17 17 C 1.46904 * 111.00003 * 163.84342 * 7 6 4 18 18 C 1.50703 * 109.46972 * 190.00438 * 17 7 6 19 19 N 1.30252 * 126.09787 * 270.28508 * 18 17 7 20 20 N 1.39872 * 110.07858 * 180.14767 * 19 18 17 21 21 H 0.97005 * 125.46054 * 179.86447 * 20 19 18 22 22 C 1.37116 * 109.06453 * 359.59878 * 20 19 18 23 23 C 1.39278 * 133.81408 * 180.22425 * 22 20 19 24 24 C 1.36582 * 119.88817 * 179.97438 * 23 22 20 25 25 C 1.39155 * 120.78813 * 0.02562 * 24 23 22 26 26 F 1.35097 * 119.71161 * 179.97438 * 25 24 23 27 27 C 1.36641 * 120.57407 * 359.97438 * 25 24 23 28 28 C 1.39970 * 119.62250 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.46956 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47419 * 300.00350 * 1 2 3 31 31 H 1.09000 * 109.46966 * 60.00514 * 1 2 3 32 32 H 1.09001 * 109.47333 * 239.99155 * 2 1 3 33 33 H 1.09004 * 109.46542 * 119.99248 * 2 1 3 34 34 H 1.08997 * 109.46983 * 54.29810 * 6 4 3 35 35 H 1.09002 * 109.46780 * 294.30158 * 6 4 3 36 36 H 1.08996 * 109.47204 * 54.86016 * 8 7 6 37 37 H 1.09000 * 109.46754 * 174.86327 * 8 7 6 38 38 H 0.97001 * 120.00323 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.46925 * 69.99851 * 17 7 6 40 40 H 1.08998 * 109.46991 * 310.00189 * 17 7 6 41 41 H 1.08007 * 120.05962 * 359.97438 * 23 22 20 42 42 H 1.07997 * 119.60806 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.18507 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0806 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3812 2.8633 0.1384 8 6 5.7615 2.4687 1.5013 9 6 5.3445 3.5447 2.4706 10 1 4.7708 4.3913 2.1235 11 6 5.6953 3.4481 3.8004 12 7 6.3942 2.4174 4.2230 13 14 5.1777 4.7815 5.0020 14 1 4.4049 5.8246 4.2812 15 1 4.3313 4.1865 6.0672 16 1 6.3853 5.3930 5.6130 17 6 6.0108 4.1366 -0.2361 18 6 7.5043 3.9531 -0.3196 19 7 8.3525 4.1101 0.6563 20 7 9.6530 3.8578 0.2075 21 1 10.4558 3.9116 0.7494 22 6 9.6104 3.5165 -1.1198 23 6 10.5795 3.1673 -2.0573 24 6 10.2115 2.8725 -3.3391 25 6 8.8751 2.9166 -3.7245 26 9 8.5355 2.6214 -4.9983 27 6 7.9034 3.2560 -2.8258 28 6 8.2575 3.5621 -1.5067 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 3.5050 3.5029 0.8340 35 1 3.6692 3.4342 -0.9371 36 1 5.2651 1.5337 1.7607 37 1 6.8418 2.3328 1.5520 38 1 6.6407 2.3493 5.1587 39 1 5.7788 4.8914 0.5152 40 1 5.6297 4.4593 -1.2050 41 1 11.6203 3.1297 -1.7711 42 1 10.9666 2.6019 -4.0622 43 1 6.8681 3.2879 -3.1316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144200697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:30 Heat of formation + Delta-G solvation = -55.935575 kcal Electronic energy + Delta-G solvation = -28861.890517 eV Core-core repulsion = 24629.550930 eV Total energy + Delta-G solvation = -4232.339588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.72646 -42.23479 -41.37153 -38.72704 -37.79580 -37.18080 -34.60691 -33.62634 -32.62182 -31.17518 -30.21836 -29.68128 -28.76241 -26.34033 -24.42568 -24.27588 -23.22374 -23.13421 -21.57349 -20.67980 -19.06745 -18.74022 -18.51744 -18.35075 -17.66353 -17.21540 -17.04307 -16.67342 -16.56703 -16.28407 -16.19658 -15.71756 -15.32253 -15.09678 -14.83867 -14.68957 -14.28442 -14.13083 -13.93463 -13.64795 -13.54023 -13.27588 -12.97110 -12.82426 -12.74051 -12.58249 -12.45529 -12.44619 -12.38941 -12.10557 -11.99199 -11.68259 -11.53242 -11.44177 -11.27982 -11.06405 -10.55290 -9.70634 -9.10975 -8.84567 -8.09954 -6.27260 -0.09346 0.35711 1.33206 1.37869 1.39242 1.42316 1.49864 1.78726 1.84454 2.40530 2.64437 3.18529 3.27252 3.40040 3.58541 3.64009 3.81702 3.93481 4.03589 4.08265 4.16258 4.34090 4.34212 4.38598 4.45532 4.57192 4.65350 4.78160 4.87324 4.88884 4.96562 5.02875 5.16959 5.18174 5.19374 5.22524 5.39496 5.45810 5.55873 5.81633 5.88065 5.93598 6.18277 6.32570 6.43128 6.72368 6.90369 6.97606 7.43345 8.94853 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008077 B = 0.004552 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3465.911700 B = 6149.021000 C = 9014.399477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.529 6.529 6 C 0.067 3.933 7 N -0.530 5.530 8 C 0.209 3.791 9 C -0.542 4.542 10 H 0.071 0.929 11 C 0.015 3.985 12 N -0.929 5.929 13 Si 0.953 3.047 14 H -0.255 1.255 15 H -0.284 1.284 16 H -0.286 1.286 17 C 0.137 3.863 18 C 0.111 3.889 19 N -0.252 5.252 20 N -0.507 5.507 21 H 0.448 0.552 22 C 0.104 3.896 23 C -0.107 4.107 24 C -0.097 4.097 25 C 0.045 3.955 26 F -0.146 7.146 27 C -0.075 4.075 28 C -0.161 4.161 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.149 0.851 36 H -0.009 1.009 37 H 0.008 0.992 38 H 0.259 0.741 39 H 0.059 0.941 40 H 0.124 0.876 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 2.716 -15.585 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.280 6.280 4 C 0.308 3.692 5 O -0.417 6.417 6 C -0.061 4.061 7 N -0.255 5.255 8 C 0.083 3.917 9 C -0.581 4.581 10 H 0.089 0.911 11 C -0.184 4.184 12 N -0.569 5.569 13 Si 0.778 3.222 14 H -0.179 1.179 15 H -0.210 1.210 16 H -0.213 1.213 17 C 0.009 3.991 18 C -0.068 4.068 19 N -0.067 5.067 20 N -0.223 5.223 21 H 0.294 0.706 22 C -0.012 4.012 23 C -0.128 4.128 24 C -0.118 4.118 25 C 0.024 3.976 26 F -0.125 7.125 27 C -0.096 4.096 28 C -0.169 4.169 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.167 0.833 36 H 0.009 0.991 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.186 0.814 42 H 0.191 0.809 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.241 2.263 -14.546 14.723 hybrid contribution 0.124 0.262 1.303 1.335 sum 0.364 2.526 -13.243 13.487 Atomic orbital electron populations 1.21796 0.89794 1.04339 1.03834 1.23224 0.97414 0.79666 1.01840 1.86469 1.23965 1.33342 1.84268 1.24086 0.80387 0.93327 0.71370 1.90628 1.61143 1.44251 1.45705 1.21580 0.88934 0.89584 1.06017 1.62003 1.06144 1.29440 1.27898 1.19333 0.95272 0.94055 0.83048 1.21909 1.34402 1.07776 0.94028 0.91145 1.25739 0.94845 0.97433 1.00396 1.70125 1.39470 1.31395 1.15903 0.85592 0.77856 0.79687 0.79050 1.17882 1.21050 1.21258 1.20448 0.85045 0.91093 1.02543 1.23511 0.96381 0.98074 0.88809 1.76902 0.88898 1.18440 1.22441 1.46058 1.07036 1.61953 1.07225 0.70577 1.19334 0.95934 0.99498 0.86463 1.20002 0.99180 1.02966 0.90699 1.20981 0.94621 0.99220 0.96941 1.17147 0.93971 1.06953 0.79505 1.91470 1.93205 1.91599 1.36190 1.20345 1.00664 0.98182 0.90428 1.19640 0.92390 1.10075 0.94796 0.88186 0.91670 0.90456 0.91199 0.93120 0.89664 0.83326 0.99109 0.97345 0.93198 0.92253 0.85860 0.81387 0.80912 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.43 6.19 71.98 0.45 1.88 16 3 O -0.36 -11.92 10.22 -51.36 -0.52 -12.45 16 4 C 0.47 18.05 7.54 71.24 0.54 18.59 16 5 O -0.53 -24.82 14.91 21.98 0.33 -24.49 16 6 C 0.07 2.36 5.43 85.56 0.46 2.82 16 7 N -0.53 -22.18 4.29 -909.95 -3.91 -26.09 16 8 C 0.21 11.26 4.62 85.56 0.40 11.66 16 9 C -0.54 -29.20 7.32 25.60 0.19 -29.01 16 10 H 0.07 3.53 5.97 -2.91 -0.02 3.51 16 11 C 0.01 0.84 5.46 84.65 0.46 1.30 16 12 N -0.93 -57.15 13.29 21.44 0.28 -56.86 16 13 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 17 C 0.14 4.92 5.33 85.56 0.46 5.38 16 18 C 0.11 4.25 6.06 44.78 0.27 4.53 16 19 N -0.25 -10.57 11.84 -43.69 -0.52 -11.09 16 20 N -0.51 -16.67 7.37 -51.51 -0.38 -17.05 16 21 H 0.45 11.77 8.96 -213.46 -1.91 9.86 16 22 C 0.10 3.10 7.33 39.19 0.29 3.38 16 23 C -0.11 -2.25 10.03 22.13 0.22 -2.03 16 24 C -0.10 -1.91 9.94 22.10 0.22 -1.69 16 25 C 0.04 1.11 7.24 22.12 0.16 1.27 16 26 F -0.15 -3.60 17.25 44.97 0.78 -2.82 16 27 C -0.07 -2.10 10.03 22.32 0.22 -1.87 16 28 C -0.16 -5.30 6.33 -20.25 -0.13 -5.42 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 33 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 34 H 0.09 3.10 6.45 -2.39 -0.02 3.09 16 35 H 0.15 3.63 7.81 -2.39 -0.02 3.61 16 36 H -0.01 -0.57 6.58 -2.39 -0.02 -0.59 16 37 H 0.01 0.51 6.79 -2.39 -0.02 0.50 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.06 2.29 6.32 -2.39 -0.02 2.27 16 40 H 0.12 3.22 7.86 -2.39 -0.02 3.21 16 41 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -78.15 369.08 2.18 -75.97 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.85 Total: 19.85 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 4.94 Total: 8.94 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.52 Total: -111.09 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.20 Total: -36.94 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -78.15 2.18 -75.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144200697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.031 kcal (2) G-P(sol) polarization free energy of solvation -78.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds