Wall clock time and date at job start Tue Mar 31 2020 18:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00339 * 2 1 4 4 C 1.53002 * 109.47118 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47049 * 65.67013 * 4 3 2 6 6 C 1.36821 * 119.99953 * 264.65201 * 5 4 3 7 7 H 1.08000 * 120.00077 * 140.71544 * 6 5 4 8 8 C 1.39084 * 120.00141 * 320.71743 * 6 5 4 9 9 N 1.31336 * 119.99889 * 162.28382 * 8 6 5 10 10 Si 1.86798 * 119.99647 * 342.28401 * 8 6 5 11 11 H 1.48504 * 109.46968 * 92.29358 * 10 8 6 12 12 H 1.48499 * 109.47026 * 212.29048 * 10 8 6 13 13 H 1.48498 * 109.47615 * 332.29285 * 10 8 6 14 14 C 1.34778 * 120.00303 * 84.65326 * 5 4 3 15 15 O 1.21573 * 119.99951 * 4.42962 * 14 5 4 16 16 C 1.47979 * 120.00239 * 184.43725 * 14 5 4 17 17 N 1.33519 * 125.33448 * 353.49387 * 16 14 5 18 18 C 1.32501 * 109.75230 * 179.97438 * 17 16 14 19 19 N 1.33990 * 132.32522 * 180.33785 * 18 17 16 20 20 C 1.31270 * 120.88000 * 180.14700 * 19 18 17 21 21 C 1.40159 * 120.35365 * 359.47441 * 20 19 18 22 22 C 1.50692 * 120.36543 * 180.27823 * 21 20 19 23 23 C 1.53007 * 109.46949 * 90.00772 * 22 21 20 24 24 O 1.42893 * 109.47058 * 180.02562 * 23 22 21 25 25 C 1.35698 * 119.26905 * 0.26734 * 21 20 19 26 26 N 1.36148 * 119.03607 * 359.97438 * 25 21 20 27 27 N 1.32063 * 125.33419 * 173.47715 * 16 14 5 28 28 H 1.09008 * 109.47228 * 59.99651 * 1 2 3 29 29 H 1.08997 * 109.47643 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46813 * 300.00374 * 1 2 3 31 31 H 1.08997 * 109.47533 * 59.99670 * 3 2 1 32 32 H 1.09008 * 109.47194 * 299.99861 * 3 2 1 33 33 H 1.08998 * 109.47477 * 305.67132 * 4 3 2 34 34 H 1.09006 * 109.46954 * 185.66352 * 4 3 2 35 35 H 0.96999 * 119.99732 * 179.97438 * 9 8 6 36 36 H 1.07997 * 119.82173 * 179.76337 * 20 19 18 37 37 H 1.09004 * 109.47538 * 210.00544 * 22 21 20 38 38 H 1.09000 * 109.47408 * 330.01224 * 22 21 20 39 39 H 1.09004 * 109.46815 * 300.00215 * 23 22 21 40 40 H 1.08993 * 109.47020 * 59.99828 * 23 22 21 41 41 H 0.96707 * 114.00181 * 180.02562 * 24 23 22 42 42 H 1.08008 * 120.48159 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9778 0.5784 -1.2576 6 6 4.2042 -0.7692 -1.3254 7 1 3.9123 -1.3222 -2.2059 8 6 4.8102 -1.4270 -0.2603 9 7 4.7199 -2.7333 -0.1582 10 14 5.7524 -0.4525 1.0250 11 1 4.8430 -0.1021 2.1454 12 1 6.8790 -1.2718 1.5397 13 1 6.2844 0.7909 0.4118 14 6 4.1618 1.3483 -2.3484 15 8 4.0390 2.5552 -2.2684 16 6 4.5130 0.7246 -3.6436 17 7 4.7940 -0.5677 -3.8274 18 6 5.0645 -0.7897 -5.1054 19 7 5.3919 -1.9012 -5.7783 20 6 5.6197 -1.8638 -7.0706 21 6 5.5131 -0.6562 -7.7740 22 6 5.7685 -0.6142 -9.2585 23 6 4.4591 -0.8672 -10.0086 24 8 4.7014 -0.8280 -11.4163 25 6 5.1772 0.4747 -7.1034 26 7 4.9517 0.4056 -5.7625 27 7 4.5975 1.3590 -4.7988 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8500 0.5586 0.8357 34 1 3.9784 2.1753 0.1021 35 1 5.1429 -3.1921 0.5845 36 1 5.8861 -2.7693 -7.5954 37 1 6.1605 0.3654 -9.5322 38 1 6.4939 -1.3831 -9.5243 39 1 4.0671 -1.8468 -9.7348 40 1 3.7337 -0.0984 -9.7428 41 1 3.9131 -0.9804 -11.9555 42 1 5.0900 1.4160 -7.6259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160823842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:03 Heat of formation + Delta-G solvation = 46.002138 kcal Electronic energy + Delta-G solvation = -28924.443376 eV Core-core repulsion = 24716.444101 eV Total energy + Delta-G solvation = -4207.999275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54246 -39.40390 -38.49395 -37.26531 -36.97044 -34.97183 -34.50413 -33.28365 -31.97523 -30.36323 -29.84110 -28.56922 -26.03644 -25.49855 -24.72745 -24.22806 -23.15931 -22.16517 -21.71794 -19.25845 -18.43941 -18.10381 -17.56361 -17.19295 -16.41555 -16.24413 -15.80932 -15.65487 -15.43112 -15.30588 -14.69867 -14.58987 -14.49998 -14.09648 -13.90979 -13.76265 -13.14692 -12.82415 -12.65964 -12.41216 -12.35396 -12.17656 -11.97867 -11.89226 -11.72605 -11.54282 -11.31570 -10.90530 -10.78655 -10.38783 -10.27096 -9.92333 -9.84612 -9.41414 -9.32229 -9.31454 -9.12039 -8.75416 -8.49338 -7.80656 -6.33480 -3.86883 0.47487 0.80452 2.05835 2.32871 3.09429 3.25629 3.30945 3.45663 3.47844 3.74652 3.85830 4.15923 4.18471 4.22990 4.35719 4.41026 4.52101 4.73240 4.87341 4.96268 5.01553 5.15544 5.21178 5.46944 5.57539 5.58330 5.65798 5.67116 5.77147 5.82509 5.87593 5.89463 6.02551 6.14426 6.34703 6.36256 6.39077 6.53136 7.19713 7.25818 7.61090 7.74731 8.05704 8.23690 8.57810 8.98741 9.33207 9.53322 10.75060 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.003193 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.353583 B = 8765.909044 C = 9269.655916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.055 3.945 4 C 0.096 3.904 5 N -0.412 5.412 6 C -0.310 4.310 7 H 0.142 0.858 8 C 0.074 3.926 9 N -0.841 5.841 10 Si 0.865 3.135 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.262 1.262 14 C 0.533 3.467 15 O -0.582 6.582 16 C 0.274 3.726 17 N -0.438 5.438 18 C 0.416 3.584 19 N -0.436 5.436 20 C 0.200 3.800 21 C -0.201 4.201 22 C -0.057 4.057 23 C 0.076 3.924 24 O -0.575 6.575 25 C 0.175 3.825 26 N -0.332 5.332 27 N -0.297 5.297 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.275 0.725 36 H 0.185 0.815 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.383 0.617 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 2.020 -15.076 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.023 4.023 4 C -0.026 4.026 5 N -0.130 5.130 6 C -0.439 4.439 7 H 0.159 0.841 8 C -0.134 4.134 9 N -0.476 5.476 10 Si 0.693 3.307 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.186 1.186 14 C 0.320 3.680 15 O -0.467 6.467 16 C -0.007 4.007 17 N -0.169 5.169 18 C 0.056 3.944 19 N -0.149 5.149 20 C 0.011 3.989 21 C -0.209 4.209 22 C -0.096 4.096 23 C -0.002 4.002 24 O -0.381 6.381 25 C 0.037 3.963 26 N -0.112 5.112 27 N -0.131 5.131 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.202 0.798 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.230 0.770 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.721 2.269 -13.569 13.864 hybrid contribution -0.269 0.927 -0.099 0.970 sum -1.990 3.195 -13.668 14.177 Atomic orbital electron populations 1.22667 0.82769 1.02212 0.98832 1.88199 1.17929 1.26569 1.95060 1.22837 0.94284 0.85375 0.99812 1.21943 0.92775 0.99637 0.88286 1.43591 1.53536 1.08668 1.07156 1.19871 1.37731 0.79668 1.06647 0.84114 1.25300 0.95911 0.95231 0.96980 1.69672 1.39587 1.07891 1.30422 0.87168 0.80356 0.81216 0.81974 1.19806 1.21192 1.18617 1.16421 0.84666 0.85041 0.81898 1.90683 1.58491 1.12928 1.84555 1.24299 0.94762 0.87235 0.94382 1.71973 1.21884 1.14880 1.08122 1.23545 0.97689 0.82776 0.90365 1.68075 1.14368 1.23834 1.08604 1.23440 0.89429 0.97651 0.88360 1.20203 1.09549 0.93342 0.97855 1.20156 0.97697 1.04909 0.86815 1.22208 0.96617 1.00449 0.80879 1.86431 1.38845 1.95639 1.17191 1.21886 0.92855 1.00957 0.80624 1.49346 1.43415 1.10747 1.07739 1.78942 1.29140 1.08276 0.96737 0.94880 0.89978 0.95013 0.93248 0.93028 0.89552 0.89199 0.91497 0.79838 0.89578 0.88868 0.92982 0.93396 0.76996 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.67 10.46 -35.23 -0.37 -8.04 16 3 C 0.05 1.08 6.24 37.16 0.23 1.31 16 4 C 0.10 2.16 4.34 -4.04 -0.02 2.14 16 5 N -0.41 -10.54 2.13 -115.84 -0.25 -10.79 16 6 C -0.31 -8.59 8.31 -15.01 -0.12 -8.71 16 7 H 0.14 4.24 5.86 -52.49 -0.31 3.94 16 8 C 0.07 2.05 5.34 -17.45 -0.09 1.95 16 9 N -0.84 -24.03 13.95 55.50 0.77 -23.25 16 10 Si 0.87 20.81 24.91 -169.99 -4.24 16.57 16 11 H -0.27 -6.12 6.60 56.52 0.37 -5.75 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.53 13.77 7.61 -12.27 -0.09 13.68 16 15 O -0.58 -15.38 16.72 5.30 0.09 -15.29 16 16 C 0.27 6.77 7.67 -156.75 -1.20 5.56 16 17 N -0.44 -10.84 7.85 -12.25 -0.10 -10.94 16 18 C 0.42 8.62 8.98 -323.03 -2.90 5.72 16 19 N -0.44 -7.57 10.48 -13.79 -0.14 -7.71 16 20 C 0.20 2.21 10.96 -17.07 -0.19 2.03 16 21 C -0.20 -1.88 5.12 -104.81 -0.54 -2.42 16 22 C -0.06 -0.35 5.73 -27.88 -0.16 -0.51 16 23 C 0.08 0.46 7.03 37.16 0.26 0.72 16 24 O -0.58 -3.74 13.66 -35.23 -0.48 -4.22 16 25 C 0.18 2.11 10.97 -16.54 -0.18 1.93 16 26 N -0.33 -6.06 3.91 -13.80 -0.05 -6.11 16 27 N -0.30 -6.58 12.79 32.01 0.41 -6.17 16 28 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.09 1.99 3.35 -51.93 -0.17 1.81 16 34 H 0.09 1.88 7.53 -51.93 -0.39 1.49 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 38 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.38 0.91 9.12 45.56 0.42 1.33 16 42 H 0.18 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -37.42 360.45 -7.08 -44.50 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.27 Total: 1.00 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: -3.89 Total: 25.02 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 0.64 Total: -64.98 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.76 Total: -27.55 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.24 Total: 16.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.42 -7.08 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160823842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.501 kcal (2) G-P(sol) polarization free energy of solvation -37.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds