Wall clock time and date at job start Tue Mar 31 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00339 * 2 1 4 4 C 1.53002 * 109.47118 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47049 * 65.67013 * 4 3 2 6 6 C 1.36821 * 119.99953 * 264.65201 * 5 4 3 7 7 H 1.08000 * 120.00077 * 140.71544 * 6 5 4 8 8 C 1.39084 * 120.00141 * 320.71743 * 6 5 4 9 9 N 1.31336 * 119.99889 * 162.28382 * 8 6 5 10 10 Si 1.86798 * 119.99647 * 342.28401 * 8 6 5 11 11 H 1.48504 * 109.46968 * 92.29358 * 10 8 6 12 12 H 1.48499 * 109.47026 * 212.29048 * 10 8 6 13 13 H 1.48498 * 109.47615 * 332.29285 * 10 8 6 14 14 C 1.34778 * 120.00303 * 84.65326 * 5 4 3 15 15 O 1.21573 * 119.99951 * 4.42962 * 14 5 4 16 16 C 1.47979 * 120.00239 * 184.43725 * 14 5 4 17 17 N 1.33519 * 125.33448 * 353.49387 * 16 14 5 18 18 C 1.32501 * 109.75230 * 179.97438 * 17 16 14 19 19 N 1.33990 * 132.32522 * 180.33785 * 18 17 16 20 20 C 1.31270 * 120.88000 * 180.14700 * 19 18 17 21 21 C 1.40159 * 120.35365 * 359.47441 * 20 19 18 22 22 C 1.50692 * 120.36543 * 180.27823 * 21 20 19 23 23 C 1.53007 * 109.46949 * 90.00772 * 22 21 20 24 24 O 1.42893 * 109.47058 * 180.02562 * 23 22 21 25 25 C 1.35698 * 119.26905 * 0.26734 * 21 20 19 26 26 N 1.36148 * 119.03607 * 359.97438 * 25 21 20 27 27 N 1.32063 * 125.33419 * 173.47715 * 16 14 5 28 28 H 1.09008 * 109.47228 * 59.99651 * 1 2 3 29 29 H 1.08997 * 109.47643 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46813 * 300.00374 * 1 2 3 31 31 H 1.08997 * 109.47533 * 59.99670 * 3 2 1 32 32 H 1.09008 * 109.47194 * 299.99861 * 3 2 1 33 33 H 1.08998 * 109.47477 * 305.67132 * 4 3 2 34 34 H 1.09006 * 109.46954 * 185.66352 * 4 3 2 35 35 H 0.96999 * 119.99732 * 179.97438 * 9 8 6 36 36 H 1.07997 * 119.82173 * 179.76337 * 20 19 18 37 37 H 1.09004 * 109.47538 * 210.00544 * 22 21 20 38 38 H 1.09000 * 109.47408 * 330.01224 * 22 21 20 39 39 H 1.09004 * 109.46815 * 300.00215 * 23 22 21 40 40 H 1.08993 * 109.47020 * 59.99828 * 23 22 21 41 41 H 0.96707 * 114.00181 * 180.02562 * 24 23 22 42 42 H 1.08008 * 120.48159 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9778 0.5784 -1.2576 6 6 4.2042 -0.7692 -1.3254 7 1 3.9123 -1.3222 -2.2059 8 6 4.8102 -1.4270 -0.2603 9 7 4.7199 -2.7333 -0.1582 10 14 5.7524 -0.4525 1.0250 11 1 4.8430 -0.1021 2.1454 12 1 6.8790 -1.2718 1.5397 13 1 6.2844 0.7909 0.4118 14 6 4.1618 1.3483 -2.3484 15 8 4.0390 2.5552 -2.2684 16 6 4.5130 0.7246 -3.6436 17 7 4.7940 -0.5677 -3.8274 18 6 5.0645 -0.7897 -5.1054 19 7 5.3919 -1.9012 -5.7783 20 6 5.6197 -1.8638 -7.0706 21 6 5.5131 -0.6562 -7.7740 22 6 5.7685 -0.6142 -9.2585 23 6 4.4591 -0.8672 -10.0086 24 8 4.7014 -0.8280 -11.4163 25 6 5.1772 0.4747 -7.1034 26 7 4.9517 0.4056 -5.7625 27 7 4.5975 1.3590 -4.7988 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8500 0.5586 0.8357 34 1 3.9784 2.1753 0.1021 35 1 5.1429 -3.1921 0.5845 36 1 5.8861 -2.7693 -7.5954 37 1 6.1605 0.3654 -9.5322 38 1 6.4939 -1.3831 -9.5243 39 1 4.0671 -1.8468 -9.7348 40 1 3.7337 -0.0984 -9.7428 41 1 3.9131 -0.9804 -11.9555 42 1 5.0900 1.4160 -7.6259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160823842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:02 Heat of formation + Delta-G solvation = 16.964510 kcal Electronic energy + Delta-G solvation = -28925.702542 eV Core-core repulsion = 24716.444101 eV Total energy + Delta-G solvation = -4209.258441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.98077 -41.05626 -39.90612 -38.61084 -37.77676 -36.88789 -35.73444 -34.34264 -33.98991 -31.88445 -31.43002 -29.57345 -27.40088 -27.21190 -26.24589 -25.45283 -24.51340 -23.54039 -22.82553 -21.06527 -19.93510 -19.30025 -18.77953 -18.33180 -18.04669 -17.74395 -17.48547 -16.97854 -16.78754 -16.37984 -16.16094 -15.95028 -15.77363 -15.51688 -15.10356 -14.98561 -14.60310 -14.49212 -14.16548 -13.77359 -13.63399 -13.61383 -13.34904 -13.16406 -13.07170 -12.83182 -12.63562 -12.42589 -12.18661 -12.05674 -11.74926 -11.35488 -11.15577 -11.00974 -10.79178 -10.74021 -10.71604 -10.51967 -9.85529 -9.77563 -8.37978 -5.97178 -0.69999 -0.44913 0.72585 0.73447 1.19838 1.33258 1.40254 1.96587 2.05199 2.20497 2.36227 2.42985 2.89725 2.92379 3.10889 3.30241 3.39095 3.62522 3.76866 4.01724 4.08060 4.09449 4.18790 4.34636 4.37046 4.43946 4.44943 4.52444 4.55367 4.62740 4.68595 4.70642 4.82729 4.90732 4.96594 5.10933 5.13535 5.24565 5.34977 6.05635 6.32835 6.34977 6.45721 6.69646 6.94950 6.99669 7.29858 7.53295 8.74689 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.003193 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.353583 B = 8765.909044 C = 9269.655916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.060 3.940 4 C 0.086 3.914 5 N -0.421 5.421 6 C -0.311 4.311 7 H 0.108 0.892 8 C 0.034 3.966 9 N -0.887 5.887 10 Si 0.917 3.083 11 H -0.244 1.244 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.533 3.467 15 O -0.595 6.595 16 C 0.246 3.754 17 N -0.492 5.492 18 C 0.405 3.595 19 N -0.478 5.478 20 C 0.220 3.780 21 C -0.157 4.157 22 C -0.053 4.053 23 C 0.076 3.924 24 O -0.591 6.591 25 C 0.153 3.847 26 N -0.329 5.329 27 N -0.310 5.310 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.278 0.722 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.400 0.600 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 2.499 -17.653 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.017 4.017 4 C -0.036 4.036 5 N -0.138 5.138 6 C -0.440 4.440 7 H 0.125 0.875 8 C -0.170 4.170 9 N -0.524 5.524 10 Si 0.743 3.257 11 H -0.170 1.170 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.320 3.680 15 O -0.480 6.480 16 C -0.035 4.035 17 N -0.225 5.225 18 C 0.045 3.955 19 N -0.193 5.193 20 C 0.035 3.965 21 C -0.164 4.164 22 C -0.092 4.092 23 C -0.002 4.002 24 O -0.399 6.399 25 C 0.018 3.982 26 N -0.110 5.110 27 N -0.146 5.146 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.254 0.746 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.250 0.750 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.407 2.739 -16.213 16.503 hybrid contribution -0.350 0.729 0.129 0.819 sum -1.757 3.469 -16.085 16.548 Atomic orbital electron populations 1.22875 0.80269 1.03225 1.00533 1.88136 1.20835 1.27589 1.95400 1.22803 0.92377 0.85234 1.01300 1.22167 0.95013 0.99683 0.86693 1.43632 1.54075 1.07978 1.08145 1.19494 1.38283 0.80403 1.05789 0.87475 1.25829 0.96443 0.95926 0.98847 1.69755 1.41548 1.09272 1.31854 0.86337 0.79465 0.79410 0.80527 1.16962 1.20974 1.19458 1.16709 0.83662 0.85041 0.82606 1.90631 1.58879 1.13326 1.85201 1.23999 0.96979 0.87856 0.94670 1.71704 1.24161 1.15347 1.11328 1.23496 0.97835 0.84210 0.89943 1.68214 1.17130 1.22706 1.11276 1.24529 0.85248 1.00249 0.86449 1.20649 1.04859 0.91515 0.99421 1.20277 0.98617 1.06689 0.83580 1.22172 0.96082 1.01012 0.80960 1.86374 1.40448 1.95730 1.17386 1.22839 0.93197 1.03829 0.78327 1.49257 1.43306 1.09279 1.09137 1.78699 1.29507 1.09621 0.96724 0.94303 0.89443 0.92025 0.89080 0.93913 0.90094 0.88027 0.91236 0.74553 0.88231 0.86599 0.92163 0.93379 0.74985 0.77083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -17.26 10.46 -148.98 -1.56 -18.82 16 3 C 0.06 2.36 6.24 71.98 0.45 2.81 16 4 C 0.09 3.90 4.34 86.38 0.37 4.27 16 5 N -0.42 -22.39 2.13 -638.67 -1.36 -23.75 16 6 C -0.31 -18.15 8.31 84.12 0.70 -17.45 16 7 H 0.11 6.97 5.86 -2.91 -0.02 6.96 16 8 C 0.03 1.94 5.34 84.97 0.45 2.40 16 9 N -0.89 -53.06 13.95 21.69 0.30 -52.75 16 10 Si 0.92 43.91 24.91 68.60 1.71 45.62 16 11 H -0.24 -10.53 6.60 99.48 0.66 -9.87 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 14 C 0.53 28.80 7.61 86.83 0.66 29.46 16 15 O -0.60 -32.37 16.72 -3.95 -0.07 -32.44 16 16 C 0.25 12.84 7.67 137.31 1.05 13.89 16 17 N -0.49 -25.89 7.85 -192.67 -1.51 -27.40 16 18 C 0.40 17.22 8.98 261.56 2.35 19.57 16 19 N -0.48 -16.32 10.48 -197.54 -2.07 -18.39 16 20 C 0.22 4.11 10.96 85.24 0.93 5.05 16 21 C -0.16 -2.31 5.12 -19.99 -0.10 -2.41 16 22 C -0.05 -0.38 5.73 29.85 0.17 -0.21 16 23 C 0.08 0.56 7.03 71.98 0.51 1.07 16 24 O -0.59 -5.24 13.66 -148.98 -2.03 -7.28 16 25 C 0.15 3.31 10.97 83.43 0.92 4.22 16 26 N -0.33 -12.01 3.91 -197.57 -0.77 -12.78 16 27 N -0.31 -14.15 12.79 -52.65 -0.67 -14.83 16 28 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.08 3.72 3.35 -2.39 -0.01 3.71 16 34 H 0.10 4.26 7.53 -2.38 -0.02 4.24 16 35 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.10 0.60 8.09 -2.39 -0.02 0.58 16 38 H 0.12 0.47 8.10 -2.39 -0.02 0.45 16 39 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.40 0.49 9.12 -74.05 -0.68 -0.18 16 42 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -89.58 360.45 2.03 -87.55 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.36 Total: 10.50 kcal Atomic # 6 Polarization: 55.05 SS G_CDS: 9.71 Total: 64.77 kcal Atomic # 7 Polarization: -143.82 SS G_CDS: -6.09 Total: -149.91 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -3.66 Total: -58.53 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.71 Total: 45.62 kcal Total: -89.58 2.03 -87.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160823842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.512 kcal (2) G-P(sol) polarization free energy of solvation -89.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds