Wall clock time and date at job start Tue Mar 31 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37668 * 119.60621 * 2 1 4 4 N 1.36266 * 134.31099 * 0.25271 * 3 2 1 5 5 H 0.96997 * 126.20270 * 0.02562 * 4 3 2 6 6 C 1.36707 * 107.59575 * 180.10756 * 4 3 2 7 7 O 1.35467 * 125.29285 * 179.90053 * 6 4 3 8 8 C 1.42895 * 116.99997 * 179.72135 * 7 6 4 9 9 H 1.09000 * 110.88620 * 333.87013 * 8 7 6 10 10 C 1.55164 * 111.00366 * 209.99781 * 8 7 6 11 11 C 1.54317 * 102.94423 * 206.38652 * 10 8 7 12 12 N 1.47025 * 107.27277 * 22.18671 * 11 10 8 13 13 C 1.36931 * 125.64960 * 181.02200 * 12 11 10 14 14 H 1.08000 * 119.99971 * 168.97701 * 13 12 11 15 15 C 1.38810 * 120.00124 * 348.98007 * 13 12 11 16 16 N 1.31624 * 120.00259 * 165.60610 * 15 13 12 17 17 Si 1.86801 * 120.00035 * 345.60607 * 15 13 12 18 18 H 1.48497 * 109.47191 * 185.29860 * 17 15 13 19 19 H 1.48499 * 109.47350 * 65.29218 * 17 15 13 20 20 H 1.48503 * 109.46994 * 305.29398 * 17 15 13 21 21 C 1.47424 * 108.69978 * 1.29268 * 12 11 10 22 22 N 1.30698 * 109.41176 * 359.63318 * 6 4 3 23 23 C 1.35847 * 109.02287 * 0.22547 * 22 6 4 24 24 C 1.46256 * 134.19763 * 179.97438 * 23 22 6 25 25 O 1.21767 * 120.73452 * 0.02562 * 24 23 22 26 26 N 1.35052 * 118.53296 * 180.02562 * 24 23 22 27 27 C 1.46495 * 119.55269 * 180.02562 * 26 24 23 28 28 C 1.34349 * 120.89916 * 359.96394 * 26 24 23 29 29 O 1.21605 * 118.87049 * 180.02562 * 28 26 24 30 30 H 1.09000 * 109.46977 * 89.99934 * 1 2 3 31 31 H 1.09005 * 109.46794 * 210.00051 * 1 2 3 32 32 H 1.09002 * 109.47068 * 329.99785 * 1 2 3 33 33 H 1.08999 * 110.71944 * 88.01386 * 10 8 7 34 34 H 1.09005 * 110.71663 * 324.74628 * 10 8 7 35 35 H 1.08997 * 109.87992 * 262.77622 * 11 10 8 36 36 H 1.08998 * 109.88768 * 141.61106 * 11 10 8 37 37 H 0.97001 * 119.99278 * 354.92729 * 16 15 13 38 38 H 1.09001 * 110.36978 * 94.48475 * 21 12 11 39 39 H 1.09003 * 110.36379 * 216.80263 * 21 12 11 40 40 H 1.09004 * 109.47268 * 269.96294 * 27 26 24 41 41 H 1.09006 * 109.46928 * 29.95791 * 27 26 24 42 42 H 1.08999 * 109.47753 * 149.95564 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1452 1.1969 0.0000 4 7 1.7677 2.5063 0.0043 5 1 0.8569 2.8399 0.0089 6 6 2.9053 3.2644 -0.0009 7 8 2.9435 4.6185 -0.0007 8 6 4.2344 5.2311 -0.0005 9 1 4.9774 4.5716 0.4481 10 6 4.1989 6.6028 0.7239 11 6 5.3635 7.3718 0.0652 12 7 5.6171 6.7453 -1.2405 13 6 6.5874 7.1208 -2.1308 14 1 6.8129 6.4931 -2.9803 15 6 7.2810 8.3081 -1.9416 16 7 8.3889 8.5375 -2.6143 17 14 6.6423 9.5805 -0.7323 18 1 7.4839 10.8017 -0.8080 19 1 6.6967 9.0263 0.6443 20 1 5.2383 9.9252 -1.0720 21 6 4.6497 5.6501 -1.4352 22 7 3.9504 2.4795 -0.0002 23 6 3.5331 1.1866 0.0004 24 6 4.2179 -0.1057 0.0008 25 8 5.4341 -0.1656 0.0011 26 7 3.4715 -1.2312 0.0008 27 6 4.1342 -2.5377 0.0018 28 6 2.1294 -1.1691 0.0012 29 8 1.4937 -2.2057 0.0017 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.3738 6.4792 1.7926 34 1 3.2510 7.1098 0.5432 35 1 6.2542 7.3013 0.6894 36 1 5.0867 8.4170 -0.0726 37 1 8.7604 7.8479 -3.1865 38 1 3.7839 6.0037 -1.9952 39 1 5.1216 4.8146 -1.9523 40 1 4.2986 -2.8625 -1.0257 41 1 5.0923 -2.4587 0.5155 42 1 3.5050 -3.2640 0.5162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229709031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:49 Heat of formation + Delta-G solvation = 13.844543 kcal Electronic energy + Delta-G solvation = -29037.367426 eV Core-core repulsion = 24827.973693 eV Total energy + Delta-G solvation = -4209.393733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -44.17923 -42.41675 -40.42049 -40.27501 -38.39097 -37.28967 -36.51804 -34.62424 -34.27634 -31.59397 -30.99411 -29.94242 -28.65226 -27.90211 -26.10601 -24.79320 -24.49783 -23.22248 -22.68415 -22.00682 -21.49231 -19.89064 -19.48424 -18.97664 -18.82995 -18.60493 -17.43196 -17.32643 -17.15140 -16.84327 -16.59215 -16.24407 -16.07186 -15.60836 -15.36043 -15.17209 -15.04437 -14.36586 -14.20485 -14.16256 -13.94963 -13.70107 -13.54324 -13.36164 -13.18087 -13.07158 -12.47460 -12.31035 -12.21852 -11.87984 -11.73846 -11.64937 -11.44704 -11.38489 -11.31753 -11.06811 -10.96844 -10.70119 -9.15968 -9.01517 -8.68234 -5.52303 -0.07298 0.00374 0.44155 0.81817 1.33057 1.42592 1.53682 1.62284 1.76402 2.20989 2.24717 2.57831 2.85789 3.09246 3.14748 3.31986 3.48222 3.66186 3.72036 3.85233 4.02942 4.11587 4.22791 4.26573 4.36569 4.37479 4.41071 4.48744 4.62459 4.65697 4.71649 4.75136 4.78500 4.85195 4.90999 5.03938 5.13238 5.42348 5.52029 5.81193 6.05776 6.06064 6.26902 6.39840 6.68964 6.78509 7.37315 8.01881 8.84498 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.002703 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.445586 B =10355.735944 C =11183.964889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.505 5.505 3 C 0.304 3.696 4 N -0.517 5.517 5 H 0.455 0.545 6 C 0.430 3.570 7 O -0.268 6.268 8 C 0.104 3.896 9 H 0.096 0.904 10 C -0.106 4.106 11 C 0.097 3.903 12 N -0.630 5.630 13 C -0.316 4.316 14 H 0.040 0.960 15 C -0.080 4.080 16 N -0.962 5.962 17 Si 1.111 2.889 18 H -0.313 1.313 19 H -0.242 1.242 20 H -0.276 1.276 21 C 0.120 3.880 22 N -0.488 5.488 23 C -0.113 4.113 24 C 0.592 3.408 25 O -0.523 6.523 26 N -0.552 5.552 27 C 0.078 3.922 28 C 0.714 3.286 29 O -0.543 6.543 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.246 0.754 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.560 -18.815 11.398 32.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.233 5.233 3 C 0.084 3.916 4 N -0.140 5.140 5 H 0.300 0.700 6 C 0.126 3.874 7 O -0.171 6.171 8 C 0.046 3.954 9 H 0.114 0.886 10 C -0.144 4.144 11 C -0.026 4.026 12 N -0.359 5.359 13 C -0.445 4.445 14 H 0.058 0.942 15 C -0.272 4.272 16 N -0.606 5.606 17 Si 0.937 3.063 18 H -0.242 1.242 19 H -0.167 1.167 20 H -0.204 1.204 21 C -0.006 4.006 22 N -0.223 5.223 23 C -0.242 4.242 24 C 0.384 3.616 25 O -0.397 6.397 26 N -0.296 5.296 27 C -0.061 4.061 28 C 0.417 3.583 29 O -0.417 6.417 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -23.284 -17.568 11.936 31.515 hybrid contribution -0.558 -1.563 -1.593 2.300 sum -23.842 -19.131 10.343 32.270 Atomic orbital electron populations 1.22507 0.72021 1.07045 1.05870 1.43840 1.10110 0.99320 1.70000 1.17274 0.90288 0.81089 1.02927 1.41237 1.10514 1.01169 1.61071 0.69958 1.19948 0.80831 0.85352 1.01315 1.85908 1.32791 1.09454 1.88925 1.23590 0.80918 0.94270 0.96627 0.88571 1.22753 0.99272 0.91543 1.00814 1.22261 0.97436 0.96548 0.86372 1.44664 1.36554 1.37593 1.17063 1.20038 1.12524 1.05862 1.06048 0.94190 1.27355 0.95676 1.00239 1.03922 1.71007 1.20378 1.36827 1.32414 0.83434 0.74094 0.72945 0.75857 1.24233 1.16659 1.20365 1.21982 0.92528 0.90557 0.95526 1.70525 1.27746 0.99977 1.24012 1.19888 0.89144 0.92196 1.22934 1.17039 0.86244 0.82680 0.75626 1.90883 1.13873 1.86984 1.47975 1.45993 1.05969 1.10250 1.67418 1.22181 0.99087 0.79609 1.05263 1.15270 0.81327 0.83168 0.78517 1.91037 1.65234 1.29875 1.55537 0.88801 0.87657 0.86891 0.86495 0.87530 0.93610 0.94309 0.94505 0.94021 0.95055 0.89494 0.88791 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.35 127.77 1.32 1.60 16 2 N -0.50 -6.99 3.03 -677.03 -2.05 -9.04 16 3 C 0.30 5.35 7.68 132.24 1.02 6.36 16 4 N -0.52 -7.17 6.12 -305.54 -1.87 -9.05 16 5 H 0.45 1.90 8.79 -92.71 -0.82 1.08 16 6 C 0.43 10.28 8.90 179.67 1.60 11.88 16 7 O -0.27 -6.62 10.01 -87.65 -0.88 -7.50 16 8 C 0.10 3.23 3.46 32.06 0.11 3.34 16 9 H 0.10 3.29 7.23 -2.39 -0.02 3.27 16 10 C -0.11 -2.92 6.68 31.78 0.21 -2.71 16 11 C 0.10 3.86 4.61 86.73 0.40 4.26 16 12 N -0.63 -30.89 3.32 -691.58 -2.30 -33.19 16 13 C -0.32 -18.96 10.56 84.03 0.89 -18.08 16 14 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 15 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 16 N -0.96 -63.42 13.70 21.65 0.30 -63.12 16 17 Si 1.11 52.67 24.53 68.60 1.68 54.35 16 18 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 19 H -0.24 -9.79 5.43 99.48 0.54 -9.25 16 20 H -0.28 -12.08 6.84 99.48 0.68 -11.40 16 21 C 0.12 4.88 6.98 86.93 0.61 5.49 16 22 N -0.49 -15.26 10.15 -301.89 -3.06 -18.33 16 23 C -0.11 -3.10 7.42 40.74 0.30 -2.80 16 24 C 0.59 16.88 7.62 86.28 0.66 17.54 16 25 O -0.52 -18.79 16.75 -4.56 -0.08 -18.87 16 26 N -0.55 -11.82 2.96 -801.34 -2.37 -14.19 16 27 C 0.08 1.24 10.09 127.77 1.29 2.53 16 28 C 0.71 13.36 8.10 179.28 1.45 14.81 16 29 O -0.54 -11.03 15.17 -4.05 -0.06 -11.09 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.10 0.51 7.34 -2.38 -0.02 0.50 16 32 H 0.11 -0.22 7.83 -2.39 -0.02 -0.24 16 33 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.05 1.88 6.78 -2.39 -0.02 1.87 16 36 H 0.04 1.56 3.82 -2.39 -0.01 1.55 16 37 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.09 1.54 7.42 -2.38 -0.02 1.52 16 42 H 0.11 1.38 7.33 -2.39 -0.02 1.37 16 Total: -1.00 -86.88 345.26 -0.32 -87.20 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 0.05 Total: 2.96 kcal Atomic # 6 Polarization: 29.54 SS G_CDS: 10.32 Total: 39.86 kcal Atomic # 7 Polarization: -135.56 SS G_CDS: -11.36 Total: -146.92 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.01 Total: -37.46 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 1.68 Total: 54.35 kcal Total: -86.88 -0.32 -87.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229709031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.045 kcal (2) G-P(sol) polarization free energy of solvation -86.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds