Wall clock time and date at job start Tue Mar 31 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37665 * 119.61106 * 2 1 4 4 N 1.36262 * 134.30109 * 0.38148 * 3 2 1 5 5 H 0.97002 * 126.20445 * 359.89828 * 4 3 2 6 6 C 1.36708 * 107.59699 * 180.02562 * 4 3 2 7 7 O 1.35459 * 125.29772 * 179.83358 * 6 4 3 8 8 C 1.42901 * 117.00409 * 179.71967 * 7 6 4 9 9 H 1.09002 * 110.64076 * 29.29547 * 8 7 6 10 10 C 1.55157 * 110.87223 * 152.54567 * 8 7 6 11 11 C 1.54909 * 101.57958 * 153.93568 * 10 8 7 12 12 N 1.47426 * 104.83381 * 322.98989 * 11 10 8 13 13 C 1.36937 * 125.65098 * 204.09440 * 12 11 10 14 14 H 1.08000 * 120.00262 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99548 * 0.03593 * 13 12 11 16 16 N 1.31615 * 120.00732 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99599 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47311 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47099 * 120.00319 * 17 15 13 20 20 H 1.48500 * 109.47306 * 240.00271 * 17 15 13 21 21 C 1.47018 * 108.70104 * 24.12870 * 12 11 10 22 22 N 1.30701 * 109.40798 * 359.56788 * 6 4 3 23 23 C 1.35852 * 109.02684 * 0.26465 * 22 6 4 24 24 C 1.46249 * 134.20852 * 180.02562 * 23 22 6 25 25 O 1.21772 * 120.73073 * 359.95464 * 24 23 22 26 26 N 1.35045 * 118.53553 * 179.97438 * 24 23 22 27 27 C 1.46493 * 119.55060 * 180.02562 * 26 24 23 28 28 C 1.34356 * 120.90493 * 0.02562 * 26 24 23 29 29 O 1.21601 * 118.87234 * 180.02562 * 28 26 24 30 30 H 1.09007 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47049 * 299.99999 * 1 2 3 32 32 H 1.09002 * 109.47589 * 59.99788 * 1 2 3 33 33 H 1.09000 * 111.00495 * 272.00951 * 10 8 7 34 34 H 1.08997 * 111.00429 * 35.86529 * 10 8 7 35 35 H 1.08998 * 110.36917 * 204.14700 * 11 10 8 36 36 H 1.09009 * 110.46209 * 81.87337 * 11 10 8 37 37 H 0.96996 * 120.00556 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.88222 * 239.52595 * 21 12 11 39 39 H 1.09005 * 110.01447 * 118.43174 * 21 12 11 40 40 H 1.09002 * 109.47216 * 0.02562 * 27 26 24 41 41 H 1.08999 * 109.47538 * 120.00238 * 27 26 24 42 42 H 1.09002 * 109.47953 * 240.00362 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1452 1.1969 0.0000 4 7 1.7677 2.5061 0.0065 5 1 0.8568 2.8397 0.0115 6 6 2.9052 3.2643 0.0018 7 8 2.9433 4.6184 0.0027 8 6 4.2343 5.2311 0.0034 9 1 4.9630 4.5926 -0.4959 10 6 4.1822 6.6308 -0.6642 11 6 5.3753 7.3453 0.0183 12 7 5.3627 6.8563 1.4090 13 6 5.8943 7.5087 2.4893 14 1 5.8341 7.0644 3.4718 15 6 6.5105 8.7412 2.3214 16 7 6.5833 9.2831 1.1242 17 14 7.2351 9.6315 3.7952 18 1 7.0236 8.8169 5.0187 19 1 8.6905 9.8367 3.5831 20 1 6.5677 10.9484 3.9553 21 6 4.6856 5.5518 1.4439 22 7 3.9503 2.4795 0.0021 23 6 3.5332 1.1865 0.0011 24 6 4.2178 -0.1058 0.0013 25 8 5.4341 -0.1657 0.0019 26 7 3.4714 -1.2312 0.0004 27 6 4.1341 -2.5377 0.0012 28 6 2.1293 -1.1692 -0.0011 29 8 1.4936 -2.2058 -0.0013 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 4.3355 6.5561 -1.7407 34 1 3.2433 7.1364 -0.4388 35 1 5.2341 8.4259 -0.0052 36 1 6.3115 7.0751 -0.4704 37 1 7.0135 10.1445 1.0070 38 1 3.8179 5.6020 2.1017 39 1 5.3739 4.7835 1.7964 40 1 5.2150 -2.3968 0.0029 41 1 3.8393 -3.0942 0.8908 42 1 3.8414 -3.0943 -0.8891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229709033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:56 Heat of formation + Delta-G solvation = 34.361247 kcal Electronic energy + Delta-G solvation = -28927.428034 eV Core-core repulsion = 24718.923972 eV Total energy + Delta-G solvation = -4208.504062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.18739 -41.42694 -39.27048 -38.92457 -36.77444 -36.04072 -35.53434 -33.28002 -32.30716 -30.24031 -29.37247 -27.94953 -27.25983 -27.18880 -24.72308 -23.79001 -23.53823 -22.01672 -20.87501 -20.41017 -20.01409 -18.66345 -18.05150 -17.72506 -17.57743 -16.98746 -16.36928 -16.12335 -15.89842 -15.71848 -15.23697 -14.82499 -14.56425 -14.25648 -13.98092 -13.87973 -13.33726 -13.19673 -13.09302 -12.92950 -12.68332 -12.52349 -11.92379 -11.63703 -11.47793 -11.14738 -11.02518 -10.85641 -10.77828 -10.60230 -10.54832 -10.28633 -10.19387 -10.09780 -9.97855 -9.85765 -9.63566 -8.69951 -7.96319 -6.89867 -5.69999 -3.11911 0.91784 0.99677 1.46251 1.77316 2.36956 2.57464 3.23340 3.31577 3.39345 3.45090 3.47550 3.87888 4.07997 4.45724 4.48790 4.64858 4.71335 4.89319 5.02365 5.05055 5.09585 5.20703 5.26315 5.35461 5.40081 5.42835 5.47384 5.68065 5.73552 5.82351 6.10637 6.27051 6.35275 6.42507 6.63936 6.65825 6.84236 7.08664 7.23697 7.41121 7.50692 7.58209 7.68959 7.77502 8.28835 9.16875 9.77026 10.39590 11.34726 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.002522 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.099146 B =11100.313824 C =11654.066128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.513 5.513 3 C 0.256 3.744 4 N -0.548 5.548 5 H 0.431 0.569 6 C 0.440 3.560 7 O -0.283 6.283 8 C 0.089 3.911 9 H 0.099 0.901 10 C -0.137 4.137 11 C 0.153 3.847 12 N -0.601 5.601 13 C -0.221 4.221 14 H 0.080 0.920 15 C -0.011 4.011 16 N -0.924 5.924 17 Si 0.917 3.083 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.122 3.878 22 N -0.446 5.446 23 C -0.065 4.065 24 C 0.594 3.406 25 O -0.479 6.479 26 N -0.554 5.554 27 C 0.084 3.916 28 C 0.717 3.283 29 O -0.539 6.539 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.020 0.980 37 H 0.253 0.747 38 H 0.032 0.968 39 H 0.036 0.964 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -19.376 -5.624 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.242 5.242 3 C 0.040 3.960 4 N -0.168 5.168 5 H 0.271 0.729 6 C 0.137 3.863 7 O -0.186 6.186 8 C 0.033 3.967 9 H 0.117 0.883 10 C -0.176 4.176 11 C 0.028 3.972 12 N -0.328 5.328 13 C -0.349 4.349 14 H 0.097 0.903 15 C -0.206 4.206 16 N -0.572 5.572 17 Si 0.747 3.253 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.005 4.005 22 N -0.180 5.180 23 C -0.195 4.195 24 C 0.385 3.615 25 O -0.350 6.350 26 N -0.299 5.299 27 C -0.057 4.057 28 C 0.419 3.581 29 O -0.412 6.412 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.730 -19.391 -5.556 24.401 hybrid contribution -1.017 0.524 0.759 1.373 sum -14.747 -18.866 -4.797 24.422 Atomic orbital electron populations 1.22149 0.75180 1.06946 1.03046 1.43553 1.08532 1.00693 1.71436 1.17485 0.91476 0.80269 1.06767 1.41590 1.10382 1.02480 1.62361 0.72873 1.20243 0.79892 0.86024 1.00160 1.86031 1.35467 1.08651 1.88471 1.23901 0.79497 0.93973 0.99303 0.88319 1.23316 1.02662 0.92402 0.99184 1.22023 0.91200 1.01344 0.82594 1.44364 1.66944 1.16736 1.04778 1.19132 1.29249 0.99647 0.86884 0.90258 1.24793 1.01024 0.97697 0.97094 1.69740 1.49098 1.18511 1.19883 0.85960 0.78558 0.79412 0.81336 1.20479 1.21655 1.21710 1.21609 0.96123 0.89925 0.92798 1.70710 1.25467 0.98496 1.23370 1.19854 0.87227 0.92773 1.19671 1.16856 0.86588 0.81904 0.76103 1.90905 1.12123 1.86277 1.45660 1.45885 1.05543 1.10203 1.68316 1.21958 0.99572 0.80101 1.04021 1.15184 0.81631 0.82734 0.78504 1.91020 1.65256 1.29655 1.55281 0.86957 0.90416 0.90459 0.91186 0.90778 0.86697 0.96202 0.93624 0.95056 0.94646 0.87724 0.90062 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.58 59.85 0.63 0.97 16 2 N -0.51 -4.61 3.03 -127.91 -0.39 -4.99 16 3 C 0.26 2.75 7.74 -153.02 -1.18 1.57 16 4 N -0.55 -5.29 6.16 -12.96 -0.08 -5.37 16 5 H 0.43 2.45 8.96 -40.82 -0.37 2.08 16 6 C 0.44 6.19 8.89 -88.67 -0.79 5.40 16 7 O -0.28 -4.38 9.93 -18.07 -0.18 -4.56 16 8 C 0.09 1.61 3.30 -24.90 -0.08 1.53 16 9 H 0.10 1.82 7.31 -51.93 -0.38 1.44 16 10 C -0.14 -2.51 6.82 -24.58 -0.17 -2.67 16 11 C 0.15 3.62 5.89 -2.53 -0.01 3.61 16 12 N -0.60 -15.41 3.39 -170.07 -0.58 -15.98 16 13 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 14 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 15 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 17 Si 0.92 21.97 29.55 -169.99 -5.02 16.94 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.12 2.63 7.02 -3.07 -0.02 2.61 16 22 N -0.45 -7.31 10.20 -10.82 -0.11 -7.42 16 23 C -0.07 -0.94 7.42 -82.66 -0.61 -1.55 16 24 C 0.59 8.44 7.63 -12.92 -0.10 8.34 16 25 O -0.48 -8.14 16.50 5.12 0.08 -8.05 16 26 N -0.55 -6.23 2.96 -129.88 -0.38 -6.61 16 27 C 0.08 0.69 9.93 59.84 0.59 1.29 16 28 C 0.72 7.68 8.11 -87.57 -0.71 6.97 16 29 O -0.54 -6.29 15.38 5.28 0.08 -6.21 16 30 H 0.11 0.59 6.80 -51.92 -0.35 0.23 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.12 3.02 5.87 -51.93 -0.30 2.72 16 36 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.87 6.90 -51.93 -0.36 0.51 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -34.69 352.76 -8.51 -43.20 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.11 Total: -1.68 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: -2.70 Total: 21.35 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -0.98 Total: -66.31 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.01 Total: -18.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.69 -8.51 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229709033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.564 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds