Wall clock time and date at job start Tue Mar 31 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37665 * 119.61106 * 2 1 4 4 N 1.36262 * 134.30109 * 0.38148 * 3 2 1 5 5 H 0.97002 * 126.20445 * 359.89828 * 4 3 2 6 6 C 1.36708 * 107.59699 * 180.02562 * 4 3 2 7 7 O 1.35459 * 125.29772 * 179.83358 * 6 4 3 8 8 C 1.42901 * 117.00409 * 179.71967 * 7 6 4 9 9 H 1.09002 * 110.64076 * 29.29547 * 8 7 6 10 10 C 1.55157 * 110.87223 * 152.54567 * 8 7 6 11 11 C 1.54909 * 101.57958 * 153.93568 * 10 8 7 12 12 N 1.47426 * 104.83381 * 322.98989 * 11 10 8 13 13 C 1.36937 * 125.65098 * 204.09440 * 12 11 10 14 14 H 1.08000 * 120.00262 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99548 * 0.03593 * 13 12 11 16 16 N 1.31615 * 120.00732 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99599 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47311 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47099 * 120.00319 * 17 15 13 20 20 H 1.48500 * 109.47306 * 240.00271 * 17 15 13 21 21 C 1.47018 * 108.70104 * 24.12870 * 12 11 10 22 22 N 1.30701 * 109.40798 * 359.56788 * 6 4 3 23 23 C 1.35852 * 109.02684 * 0.26465 * 22 6 4 24 24 C 1.46249 * 134.20852 * 180.02562 * 23 22 6 25 25 O 1.21772 * 120.73073 * 359.95464 * 24 23 22 26 26 N 1.35045 * 118.53553 * 179.97438 * 24 23 22 27 27 C 1.46493 * 119.55060 * 180.02562 * 26 24 23 28 28 C 1.34356 * 120.90493 * 0.02562 * 26 24 23 29 29 O 1.21601 * 118.87234 * 180.02562 * 28 26 24 30 30 H 1.09007 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47049 * 299.99999 * 1 2 3 32 32 H 1.09002 * 109.47589 * 59.99788 * 1 2 3 33 33 H 1.09000 * 111.00495 * 272.00951 * 10 8 7 34 34 H 1.08997 * 111.00429 * 35.86529 * 10 8 7 35 35 H 1.08998 * 110.36917 * 204.14700 * 11 10 8 36 36 H 1.09009 * 110.46209 * 81.87337 * 11 10 8 37 37 H 0.96996 * 120.00556 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.88222 * 239.52595 * 21 12 11 39 39 H 1.09005 * 110.01447 * 118.43174 * 21 12 11 40 40 H 1.09002 * 109.47216 * 0.02562 * 27 26 24 41 41 H 1.08999 * 109.47538 * 120.00238 * 27 26 24 42 42 H 1.09002 * 109.47953 * 240.00362 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1452 1.1969 0.0000 4 7 1.7677 2.5061 0.0065 5 1 0.8568 2.8397 0.0115 6 6 2.9052 3.2643 0.0018 7 8 2.9433 4.6184 0.0027 8 6 4.2343 5.2311 0.0034 9 1 4.9630 4.5926 -0.4959 10 6 4.1822 6.6308 -0.6642 11 6 5.3753 7.3453 0.0183 12 7 5.3627 6.8563 1.4090 13 6 5.8943 7.5087 2.4893 14 1 5.8341 7.0644 3.4718 15 6 6.5105 8.7412 2.3214 16 7 6.5833 9.2831 1.1242 17 14 7.2351 9.6315 3.7952 18 1 7.0236 8.8169 5.0187 19 1 8.6905 9.8367 3.5831 20 1 6.5677 10.9484 3.9553 21 6 4.6856 5.5518 1.4439 22 7 3.9503 2.4795 0.0021 23 6 3.5332 1.1865 0.0011 24 6 4.2178 -0.1058 0.0013 25 8 5.4341 -0.1657 0.0019 26 7 3.4714 -1.2312 0.0004 27 6 4.1341 -2.5377 0.0012 28 6 2.1293 -1.1692 -0.0011 29 8 1.4936 -2.2058 -0.0013 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 4.3355 6.5561 -1.7407 34 1 3.2433 7.1364 -0.4388 35 1 5.2341 8.4259 -0.0052 36 1 6.3115 7.0751 -0.4704 37 1 7.0135 10.1445 1.0070 38 1 3.8179 5.6020 2.1017 39 1 5.3739 4.7835 1.7964 40 1 5.2150 -2.3968 0.0029 41 1 3.8393 -3.0942 0.8908 42 1 3.8414 -3.0943 -0.8891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229709033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:54 Heat of formation + Delta-G solvation = 8.748272 kcal Electronic energy + Delta-G solvation = -28928.538696 eV Core-core repulsion = 24718.923972 eV Total energy + Delta-G solvation = -4209.614724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.14514 -42.38693 -40.28682 -40.26101 -38.11643 -37.21101 -36.49588 -34.39677 -34.14854 -31.31761 -30.94489 -29.27075 -28.53541 -27.88072 -26.59537 -24.80390 -24.46619 -23.18037 -22.19253 -21.93319 -21.34509 -19.70411 -18.98965 -18.95251 -18.70788 -18.55206 -17.35107 -17.15201 -17.00067 -16.74545 -16.60735 -16.18482 -15.97701 -15.65605 -15.16515 -14.99998 -14.64673 -14.32794 -14.12448 -13.92349 -13.70852 -13.51741 -13.36644 -13.32377 -12.95009 -12.72380 -12.42974 -12.30575 -12.16442 -11.98642 -11.89210 -11.78011 -11.61563 -11.51587 -11.34321 -11.26363 -10.94318 -10.77533 -8.99861 -8.93179 -7.80111 -5.25324 -0.04364 0.04966 0.46731 0.86165 1.36084 1.48129 1.49343 1.59505 1.66862 2.23808 2.30091 2.49253 2.93217 3.14078 3.31594 3.60658 3.66011 3.76674 3.91215 3.93072 4.10210 4.21922 4.25066 4.36694 4.42759 4.44125 4.58335 4.66467 4.70448 4.74477 4.77803 4.89170 4.92146 4.97851 5.08041 5.43817 5.48659 5.57811 5.74954 5.85676 6.08627 6.27421 6.29887 6.43641 6.71637 7.08074 7.72437 8.34687 9.22381 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.002522 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.099146 B =11100.313824 C =11654.066128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.505 5.505 3 C 0.302 3.698 4 N -0.519 5.519 5 H 0.454 0.546 6 C 0.429 3.571 7 O -0.274 6.274 8 C 0.110 3.890 9 H 0.095 0.905 10 C -0.118 4.118 11 C 0.153 3.847 12 N -0.622 5.622 13 C -0.242 4.242 14 H 0.078 0.922 15 C -0.062 4.062 16 N -0.946 5.946 17 Si 0.982 3.018 18 H -0.270 1.270 19 H -0.292 1.292 20 H -0.287 1.287 21 C 0.121 3.879 22 N -0.485 5.485 23 C -0.112 4.112 24 C 0.594 3.406 25 O -0.522 6.522 26 N -0.552 5.552 27 C 0.078 3.922 28 C 0.715 3.285 29 O -0.544 6.544 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.088 0.912 36 H -0.003 1.003 37 H 0.250 0.750 38 H 0.034 0.966 39 H 0.022 0.978 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.671 -20.367 -5.693 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.233 5.233 3 C 0.083 3.917 4 N -0.141 5.141 5 H 0.299 0.701 6 C 0.125 3.875 7 O -0.178 6.178 8 C 0.053 3.947 9 H 0.113 0.887 10 C -0.156 4.156 11 C 0.028 3.972 12 N -0.350 5.350 13 C -0.370 4.370 14 H 0.096 0.904 15 C -0.255 4.255 16 N -0.596 5.596 17 Si 0.810 3.190 18 H -0.194 1.194 19 H -0.219 1.219 20 H -0.213 1.213 21 C -0.005 4.005 22 N -0.220 5.220 23 C -0.241 4.241 24 C 0.386 3.614 25 O -0.396 6.396 26 N -0.296 5.296 27 C -0.061 4.061 28 C 0.418 3.582 29 O -0.417 6.417 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.015 0.985 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.040 0.960 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.613 -20.437 -5.629 26.932 hybrid contribution -0.258 0.687 0.787 1.076 sum -16.871 -19.750 -4.843 26.423 Atomic orbital electron populations 1.22573 0.72184 1.07802 1.05605 1.43801 1.10106 0.99344 1.70065 1.17280 0.90359 0.80997 1.03102 1.41271 1.10513 1.01327 1.60993 0.70115 1.20027 0.80901 0.85345 1.01276 1.85974 1.33344 1.09600 1.88854 1.23389 0.80640 0.94089 0.96552 0.88685 1.23092 1.00457 0.91650 1.00423 1.21828 0.92584 1.00389 0.82362 1.44647 1.67103 1.18210 1.05020 1.19448 1.29660 1.00210 0.87731 0.90377 1.25617 1.01645 0.98441 0.99771 1.69973 1.49536 1.18557 1.21516 0.84961 0.77287 0.78149 0.78593 1.19407 1.21884 1.21333 1.21667 0.95505 0.87880 0.95432 1.70539 1.27525 0.99893 1.24044 1.19915 0.89072 0.92250 1.22852 1.16999 0.86260 0.82640 0.75480 1.90871 1.13752 1.86881 1.48121 1.45974 1.05899 1.10286 1.67438 1.22177 0.99286 0.79149 1.05534 1.15257 0.81301 0.83162 0.78475 1.91029 1.65191 1.29892 1.55634 0.87018 0.88038 0.87794 0.88008 0.89808 0.89464 0.98517 0.93989 0.94786 0.96025 0.88263 0.88618 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.58 127.77 1.35 1.67 16 2 N -0.50 -7.49 3.03 -677.04 -2.05 -9.54 16 3 C 0.30 5.72 7.74 132.24 1.02 6.74 16 4 N -0.52 -8.38 6.16 -305.55 -1.88 -10.26 16 5 H 0.45 3.15 8.96 -92.71 -0.83 2.32 16 6 C 0.43 11.33 8.89 179.67 1.60 12.92 16 7 O -0.27 -7.96 9.93 -87.57 -0.87 -8.82 16 8 C 0.11 3.90 3.30 31.78 0.10 4.00 16 9 H 0.10 3.48 7.31 -2.39 -0.02 3.47 16 10 C -0.12 -4.17 6.82 31.99 0.22 -3.96 16 11 C 0.15 7.40 5.89 86.85 0.51 7.91 16 12 N -0.62 -32.59 3.39 -691.98 -2.35 -34.94 16 13 C -0.24 -13.74 10.27 84.03 0.86 -12.88 16 14 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 15 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 16 N -0.95 -55.53 10.09 21.65 0.22 -55.31 16 17 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 C 0.12 5.27 7.02 86.73 0.61 5.88 16 22 N -0.49 -15.77 10.20 -301.90 -3.08 -18.85 16 23 C -0.11 -3.17 7.42 40.74 0.30 -2.87 16 24 C 0.59 16.98 7.63 86.28 0.66 17.64 16 25 O -0.52 -18.49 16.50 -4.58 -0.08 -18.56 16 26 N -0.55 -11.90 2.96 -801.36 -2.37 -14.27 16 27 C 0.08 1.23 9.93 127.77 1.27 2.50 16 28 C 0.72 13.75 8.11 179.28 1.45 15.21 16 29 O -0.54 -11.31 15.38 -4.03 -0.06 -11.37 16 30 H 0.11 0.75 6.80 -2.38 -0.02 0.73 16 31 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.09 4.72 5.87 -2.39 -0.01 4.71 16 36 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 37 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16 38 H 0.03 1.46 8.06 -2.39 -0.02 1.44 16 39 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.10 1.69 6.90 -2.39 -0.02 1.67 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -78.06 352.76 0.19 -77.87 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 0.26 Total: 4.67 kcal Atomic # 6 Polarization: 41.31 SS G_CDS: 10.43 Total: 51.73 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -11.51 Total: -143.18 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.01 Total: -38.76 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.06 0.19 -77.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229709033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.621 kcal (2) G-P(sol) polarization free energy of solvation -78.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds