Wall clock time and date at job start Tue Mar 31 2020 18:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47231 * 2 1 4 4 C 1.34222 * 117.00459 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99427 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00682 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.47271 * 180.02562 * 6 4 3 8 8 C 1.46910 * 111.00106 * 293.95504 * 7 6 4 9 9 C 1.50699 * 109.46817 * 301.91702 * 8 7 6 10 10 H 1.08000 * 120.00055 * 354.58286 * 9 8 7 11 11 C 1.37877 * 119.99855 * 174.58817 * 9 8 7 12 12 N 1.31514 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99860 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46998 * 120.00099 * 13 11 9 16 16 H 1.48507 * 109.47023 * 239.99678 * 13 11 9 17 17 C 1.46896 * 110.99847 * 170.00437 * 7 6 4 18 18 C 1.50701 * 109.47356 * 196.03888 * 17 7 6 19 19 N 1.30231 * 126.10812 * 83.35287 * 18 17 7 20 20 N 1.39868 * 110.09503 * 179.97438 * 19 18 17 21 21 H 0.96993 * 125.46503 * 180.02562 * 20 19 18 22 22 C 1.37056 * 109.06986 * 0.02562 * 20 19 18 23 23 C 1.39274 * 133.79032 * 180.02562 * 22 20 19 24 24 C 1.37794 * 119.71788 * 179.97438 * 23 22 20 25 25 F 1.35094 * 119.69005 * 179.97438 * 24 23 22 26 26 C 1.39199 * 120.61091 * 0.02562 * 24 23 22 27 27 C 1.36396 * 120.61174 * 359.97438 * 26 24 23 28 28 C 1.39941 * 119.81244 * 359.77975 * 27 26 24 29 29 H 1.09002 * 109.47459 * 59.99819 * 1 2 3 30 30 H 1.08994 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47252 * 300.00325 * 1 2 3 32 32 H 1.08999 * 109.46922 * 240.00229 * 2 1 3 33 33 H 1.08999 * 109.46967 * 120.00078 * 2 1 3 34 34 H 1.09001 * 109.46597 * 59.99788 * 6 4 3 35 35 H 1.09001 * 109.46851 * 300.00310 * 6 4 3 36 36 H 1.08992 * 109.46869 * 61.91429 * 8 7 6 37 37 H 1.08999 * 109.47153 * 181.91541 * 8 7 6 38 38 H 0.96997 * 120.00069 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.47423 * 316.03283 * 17 7 6 40 40 H 1.08997 * 109.47438 * 76.03889 * 17 7 6 41 41 H 1.07998 * 120.14130 * 359.97438 * 23 22 20 42 42 H 1.08005 * 119.69191 * 179.97438 * 26 24 23 43 43 H 1.08005 * 120.08888 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3877 2.8605 0.0001 8 6 5.8842 2.2774 1.2538 9 6 5.4056 3.1065 2.4176 10 1 4.8684 4.0266 2.2404 11 6 5.6535 2.6906 3.7085 12 7 6.3073 1.5700 3.9242 13 14 5.0609 3.7187 5.1511 14 1 4.3572 4.9241 4.6440 15 1 4.1298 2.9145 5.9827 16 1 6.2252 4.1352 5.9736 17 6 5.9841 4.1816 -0.2384 18 6 7.4323 4.0172 -0.6213 19 7 7.8859 3.7540 -1.8134 20 7 9.2821 3.6738 -1.7895 21 1 9.8483 3.4885 -2.5548 22 6 9.7217 3.8992 -0.5110 23 6 10.9812 3.9399 0.0819 24 6 11.0933 4.1995 1.4305 25 9 12.3153 4.2384 2.0052 26 6 9.9590 4.4208 2.2064 27 6 8.7161 4.3854 1.6456 28 6 8.5775 4.1288 0.2769 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5843 3.4701 0.8895 35 1 3.5852 3.4691 -0.8905 36 1 5.5089 1.2591 1.3544 37 1 6.9740 2.2634 1.2414 38 1 6.4814 1.2772 4.8324 39 1 5.4493 4.6812 -1.0462 40 1 5.9141 4.7811 0.6691 41 1 11.8664 3.7689 -0.5128 42 1 10.0640 4.6226 3.2622 43 1 7.8418 4.5588 2.2554 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233128546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:34 Heat of formation + Delta-G solvation = -36.041745 kcal Electronic energy + Delta-G solvation = -29114.960684 eV Core-core repulsion = 24883.483757 eV Total energy + Delta-G solvation = -4231.476926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.74956 -40.96067 -39.85206 -37.13999 -36.52584 -35.59664 -32.70406 -32.23781 -31.51810 -29.63724 -29.14325 -28.00579 -27.19083 -24.60071 -23.10459 -22.93166 -22.07768 -21.59336 -20.09069 -19.14651 -17.94212 -17.12320 -17.06633 -16.60058 -16.20343 -16.18094 -15.50354 -15.47693 -15.00230 -14.88188 -14.81816 -14.15620 -13.97091 -13.67635 -13.41935 -13.39951 -13.02090 -12.84652 -12.58842 -12.35694 -12.21202 -11.88594 -11.40928 -11.35221 -11.27979 -11.12808 -10.99520 -10.92743 -10.86818 -10.48487 -10.28421 -10.18664 -10.09206 -9.87653 -9.74994 -9.41436 -8.46371 -8.19595 -7.81267 -7.37390 -6.07602 -4.18647 1.09543 1.67848 2.64715 2.90278 2.97035 3.16428 3.20877 3.31129 3.31213 3.93361 4.33209 4.45663 4.76248 4.85255 4.94084 5.09233 5.10738 5.16569 5.22385 5.26665 5.31625 5.47207 5.53072 5.70320 5.78536 5.85924 5.88696 5.91361 5.97709 6.06089 6.14606 6.21146 6.31430 6.41057 6.66089 6.77742 6.95300 7.08842 7.11824 7.50516 7.52577 7.78957 7.90558 7.95143 8.12566 8.18925 8.53405 8.92634 9.47604 10.97063 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011232 B = 0.004086 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.331552 B = 6851.231262 C = 8651.868988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.467 3.533 5 O -0.483 6.483 6 C 0.073 3.927 7 N -0.523 5.523 8 C 0.175 3.825 9 C -0.561 4.561 10 H 0.059 0.941 11 C 0.073 3.927 12 N -0.877 5.877 13 Si 0.879 3.121 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.133 3.867 18 C 0.144 3.856 19 N -0.244 5.244 20 N -0.515 5.515 21 H 0.436 0.564 22 C 0.150 3.850 23 C -0.197 4.197 24 C 0.148 3.852 25 F -0.140 7.140 26 C -0.199 4.199 27 C 0.021 3.979 28 C -0.172 4.172 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 4.907 -7.900 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.287 6.287 4 C 0.308 3.692 5 O -0.368 6.368 6 C -0.056 4.056 7 N -0.249 5.249 8 C 0.050 3.950 9 C -0.600 4.600 10 H 0.077 0.923 11 C -0.132 4.132 12 N -0.514 5.514 13 Si 0.707 3.293 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.208 1.208 17 C 0.004 3.996 18 C -0.035 4.035 19 N -0.058 5.058 20 N -0.229 5.229 21 H 0.280 0.720 22 C 0.033 3.967 23 C -0.220 4.220 24 C 0.126 3.874 25 F -0.119 7.119 26 C -0.220 4.220 27 C 0.000 4.000 28 C -0.180 4.180 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.662 3.906 -9.378 10.180 hybrid contribution 0.458 0.615 2.168 2.300 sum -0.203 4.521 -7.209 8.512 Atomic orbital electron populations 1.21779 0.93245 1.02444 1.03223 1.22866 0.94730 0.81164 1.02374 1.86456 1.25580 1.31560 1.85101 1.23636 0.79771 0.93159 0.72605 1.90642 1.59808 1.42972 1.43352 1.21375 0.90538 0.90151 1.03575 1.62215 1.02609 1.19816 1.40284 1.20094 0.96474 0.96673 0.81783 1.21709 1.37956 1.08341 0.91949 0.92315 1.24901 0.94825 0.94774 0.98665 1.69971 1.39399 1.21081 1.20997 0.86745 0.78812 0.80568 0.83185 1.19621 1.21029 1.20797 1.20331 0.86264 0.92208 1.00820 1.23392 0.95667 0.95801 0.88644 1.76579 0.88350 1.18958 1.21922 1.45865 1.04379 1.65488 1.07164 0.72006 1.18354 0.94082 0.97737 0.86503 1.19602 0.95348 1.13267 0.93773 1.17330 0.79910 0.99599 0.90558 1.91473 1.41749 1.93799 1.84862 1.20604 0.91150 1.09406 1.00820 1.20515 0.97609 0.89687 0.92142 1.19823 0.91558 1.11613 0.94988 0.91791 0.90736 0.91575 0.91742 0.91386 0.89143 0.88682 0.92460 0.94743 0.92777 0.90308 0.90587 0.85031 0.84622 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.17 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.27 10.22 -39.24 -0.40 -6.67 16 4 C 0.47 9.19 7.70 36.01 0.28 9.47 16 5 O -0.48 -11.25 14.06 -18.76 -0.26 -11.51 16 6 C 0.07 1.30 5.32 -4.98 -0.03 1.27 16 7 N -0.52 -10.63 4.39 -238.97 -1.05 -11.68 16 8 C 0.17 4.28 4.64 -4.97 -0.02 4.25 16 9 C -0.56 -13.71 7.07 -34.44 -0.24 -13.96 16 10 H 0.06 1.36 5.97 -52.49 -0.31 1.05 16 11 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 12 N -0.88 -24.56 13.29 55.43 0.74 -23.82 16 13 Si 0.88 19.76 29.54 -169.99 -5.02 14.74 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 C 0.13 2.32 5.43 -4.98 -0.03 2.30 16 18 C 0.14 2.63 6.27 -80.18 -0.50 2.13 16 19 N -0.24 -4.31 12.55 34.84 0.44 -3.87 16 20 N -0.52 -7.80 7.37 32.36 0.24 -7.56 16 21 H 0.44 4.95 8.96 -182.78 -1.64 3.31 16 22 C 0.15 2.44 7.33 -84.17 -0.62 1.83 16 23 C -0.20 -2.89 10.05 -39.36 -0.40 -3.28 16 24 C 0.15 2.30 7.28 -39.39 -0.29 2.01 16 25 F -0.14 -2.11 17.25 2.25 0.04 -2.07 16 26 C -0.20 -3.26 9.94 -39.89 -0.40 -3.65 16 27 C 0.02 0.37 9.67 -39.61 -0.38 -0.01 16 28 C -0.17 -3.12 5.58 -105.19 -0.59 -3.70 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.09 1.64 6.27 -51.93 -0.33 1.32 16 35 H 0.10 1.35 7.86 -51.93 -0.41 0.94 16 36 H 0.06 1.64 5.92 -51.93 -0.31 1.33 16 37 H 0.03 0.92 6.34 -51.93 -0.33 0.59 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.08 1.15 7.81 -51.93 -0.41 0.74 16 40 H 0.08 1.33 6.50 -51.93 -0.34 0.99 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 43 H 0.15 2.83 7.80 -52.48 -0.41 2.42 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -31.24 366.76 -9.02 -40.26 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.57 Total: 6.28 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.70 Total: 0.38 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.36 Total: -46.93 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.66 Total: -18.19 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.24 -9.02 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233128546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.218 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds