Wall clock time and date at job start Tue Mar 31 2020 18:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47231 * 2 1 4 4 C 1.34222 * 117.00459 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99427 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00682 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.47271 * 180.02562 * 6 4 3 8 8 C 1.46910 * 111.00106 * 293.95504 * 7 6 4 9 9 C 1.50699 * 109.46817 * 301.91702 * 8 7 6 10 10 H 1.08000 * 120.00055 * 354.58286 * 9 8 7 11 11 C 1.37877 * 119.99855 * 174.58817 * 9 8 7 12 12 N 1.31514 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99860 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46998 * 120.00099 * 13 11 9 16 16 H 1.48507 * 109.47023 * 239.99678 * 13 11 9 17 17 C 1.46896 * 110.99847 * 170.00437 * 7 6 4 18 18 C 1.50701 * 109.47356 * 196.03888 * 17 7 6 19 19 N 1.30231 * 126.10812 * 83.35287 * 18 17 7 20 20 N 1.39868 * 110.09503 * 179.97438 * 19 18 17 21 21 H 0.96993 * 125.46503 * 180.02562 * 20 19 18 22 22 C 1.37056 * 109.06986 * 0.02562 * 20 19 18 23 23 C 1.39274 * 133.79032 * 180.02562 * 22 20 19 24 24 C 1.37794 * 119.71788 * 179.97438 * 23 22 20 25 25 F 1.35094 * 119.69005 * 179.97438 * 24 23 22 26 26 C 1.39199 * 120.61091 * 0.02562 * 24 23 22 27 27 C 1.36396 * 120.61174 * 359.97438 * 26 24 23 28 28 C 1.39941 * 119.81244 * 359.77975 * 27 26 24 29 29 H 1.09002 * 109.47459 * 59.99819 * 1 2 3 30 30 H 1.08994 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47252 * 300.00325 * 1 2 3 32 32 H 1.08999 * 109.46922 * 240.00229 * 2 1 3 33 33 H 1.08999 * 109.46967 * 120.00078 * 2 1 3 34 34 H 1.09001 * 109.46597 * 59.99788 * 6 4 3 35 35 H 1.09001 * 109.46851 * 300.00310 * 6 4 3 36 36 H 1.08992 * 109.46869 * 61.91429 * 8 7 6 37 37 H 1.08999 * 109.47153 * 181.91541 * 8 7 6 38 38 H 0.96997 * 120.00069 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.47423 * 316.03283 * 17 7 6 40 40 H 1.08997 * 109.47438 * 76.03889 * 17 7 6 41 41 H 1.07998 * 120.14130 * 359.97438 * 23 22 20 42 42 H 1.08005 * 119.69191 * 179.97438 * 26 24 23 43 43 H 1.08005 * 120.08888 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3877 2.8605 0.0001 8 6 5.8842 2.2774 1.2538 9 6 5.4056 3.1065 2.4176 10 1 4.8684 4.0266 2.2404 11 6 5.6535 2.6906 3.7085 12 7 6.3073 1.5700 3.9242 13 14 5.0609 3.7187 5.1511 14 1 4.3572 4.9241 4.6440 15 1 4.1298 2.9145 5.9827 16 1 6.2252 4.1352 5.9736 17 6 5.9841 4.1816 -0.2384 18 6 7.4323 4.0172 -0.6213 19 7 7.8859 3.7540 -1.8134 20 7 9.2821 3.6738 -1.7895 21 1 9.8483 3.4885 -2.5548 22 6 9.7217 3.8992 -0.5110 23 6 10.9812 3.9399 0.0819 24 6 11.0933 4.1995 1.4305 25 9 12.3153 4.2384 2.0052 26 6 9.9590 4.4208 2.2064 27 6 8.7161 4.3854 1.6456 28 6 8.5775 4.1288 0.2769 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5843 3.4701 0.8895 35 1 3.5852 3.4691 -0.8905 36 1 5.5089 1.2591 1.3544 37 1 6.9740 2.2634 1.2414 38 1 6.4814 1.2772 4.8324 39 1 5.4493 4.6812 -1.0462 40 1 5.9141 4.7811 0.6691 41 1 11.8664 3.7689 -0.5128 42 1 10.0640 4.6226 3.2622 43 1 7.8418 4.5588 2.2554 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233128546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:33 Heat of formation + Delta-G solvation = -55.802767 kcal Electronic energy + Delta-G solvation = -29115.817586 eV Core-core repulsion = 24883.483757 eV Total energy + Delta-G solvation = -4232.333829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.96500 -42.26009 -41.35531 -38.65262 -37.82366 -37.14522 -34.56814 -33.65076 -32.61341 -30.93807 -30.45031 -29.62106 -28.78834 -26.27292 -24.44788 -24.20886 -23.38343 -23.03662 -21.56858 -20.61710 -19.25996 -18.66283 -18.39349 -18.29537 -17.60953 -17.46087 -17.04431 -16.75272 -16.50751 -16.32012 -16.20531 -15.71432 -15.32552 -14.98038 -14.90811 -14.77298 -14.29776 -14.25355 -14.01376 -13.57866 -13.53526 -13.20835 -12.92246 -12.80970 -12.69968 -12.56135 -12.51835 -12.43326 -12.24721 -12.15322 -11.98856 -11.67209 -11.58781 -11.42461 -11.22708 -11.02768 -10.47767 -9.50340 -9.11481 -8.99369 -8.04722 -6.23237 -0.19798 0.38192 1.30096 1.42118 1.43915 1.46210 1.55027 1.69531 1.83393 2.44091 2.62068 3.20584 3.22755 3.40112 3.57270 3.63633 3.74366 3.96133 4.03624 4.03831 4.17328 4.30211 4.38186 4.39888 4.50392 4.54489 4.65875 4.71831 4.87362 4.90050 4.96732 5.01992 5.09282 5.18322 5.30337 5.34214 5.45872 5.49153 5.60918 5.81193 5.91380 5.99728 6.24534 6.37738 6.40931 6.65120 6.97239 7.02231 7.47600 8.98890 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011232 B = 0.004086 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.331552 B = 6851.231262 C = 8651.868988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.529 6.529 6 C 0.072 3.928 7 N -0.534 5.534 8 C 0.199 3.801 9 C -0.547 4.547 10 H 0.075 0.925 11 C 0.021 3.979 12 N -0.923 5.923 13 Si 0.942 3.058 14 H -0.253 1.253 15 H -0.292 1.292 16 H -0.281 1.281 17 C 0.135 3.865 18 C 0.126 3.874 19 N -0.253 5.253 20 N -0.501 5.501 21 H 0.453 0.547 22 C 0.144 3.856 23 C -0.181 4.181 24 C 0.143 3.857 25 F -0.135 7.135 26 C -0.202 4.202 27 C 0.003 3.997 28 C -0.195 4.195 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.010 0.990 37 H 0.006 0.994 38 H 0.259 0.741 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.166 0.834 42 H 0.145 0.855 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 6.571 -8.954 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.308 3.692 5 O -0.417 6.417 6 C -0.057 4.057 7 N -0.259 5.259 8 C 0.073 3.927 9 C -0.586 4.586 10 H 0.093 0.907 11 C -0.179 4.179 12 N -0.562 5.562 13 Si 0.768 3.232 14 H -0.176 1.176 15 H -0.219 1.219 16 H -0.207 1.207 17 C 0.006 3.994 18 C -0.053 4.053 19 N -0.067 5.067 20 N -0.217 5.217 21 H 0.300 0.700 22 C 0.027 3.973 23 C -0.204 4.204 24 C 0.121 3.879 25 F -0.114 7.114 26 C -0.222 4.222 27 C -0.017 4.017 28 C -0.203 4.203 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.132 0.868 40 H 0.092 0.908 41 H 0.184 0.816 42 H 0.163 0.837 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.309 5.605 -10.468 11.947 hybrid contribution 0.671 0.050 2.407 2.499 sum -0.638 5.655 -8.062 9.868 Atomic orbital electron populations 1.21790 0.89713 1.04303 1.03863 1.23193 0.97436 0.79797 1.01661 1.86456 1.24061 1.33169 1.84388 1.24109 0.80327 0.93449 0.71364 1.90633 1.60987 1.44466 1.45606 1.21569 0.88889 0.89497 1.05724 1.62019 1.04283 1.21815 1.37816 1.19537 0.94455 0.94703 0.84019 1.21952 1.36575 1.08275 0.91812 0.90707 1.25675 0.95074 0.95648 1.01482 1.70131 1.41562 1.23270 1.21242 0.85742 0.78130 0.79464 0.79837 1.17601 1.21892 1.20685 1.20420 0.86358 0.90623 1.01960 1.23526 0.96137 0.96707 0.88935 1.76484 0.89638 1.18792 1.21814 1.45832 1.03776 1.64603 1.07502 0.69976 1.18491 0.94219 0.97917 0.86708 1.19889 0.95874 1.11079 0.93595 1.17331 0.79800 0.99815 0.90931 1.91487 1.41262 1.93773 1.84854 1.20750 0.91095 1.08859 1.01519 1.20393 0.97661 0.91421 0.92265 1.20051 0.92517 1.12361 0.95384 0.90486 0.88276 0.91520 0.91528 0.93220 0.89039 0.84090 0.97166 0.97637 0.93154 0.86845 0.90809 0.81639 0.83680 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 10.29 71.98 0.74 -1.89 16 2 C 0.05 1.50 6.19 71.98 0.45 1.95 16 3 O -0.36 -12.15 10.22 -51.34 -0.52 -12.67 16 4 C 0.46 18.36 7.70 71.24 0.55 18.91 16 5 O -0.53 -25.58 14.06 21.95 0.31 -25.27 16 6 C 0.07 2.47 5.32 85.56 0.46 2.93 16 7 N -0.53 -21.64 4.39 -909.96 -4.00 -25.64 16 8 C 0.20 10.09 4.64 85.55 0.40 10.48 16 9 C -0.55 -27.09 7.07 25.60 0.18 -26.90 16 10 H 0.07 3.40 5.97 -2.91 -0.02 3.38 16 11 C 0.02 1.11 5.46 84.65 0.46 1.58 16 12 N -0.92 -53.62 13.29 21.45 0.28 -53.33 16 13 Si 0.94 40.83 29.54 68.60 2.03 42.86 16 14 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 17 C 0.14 4.57 5.43 85.56 0.46 5.04 16 18 C 0.13 4.53 6.27 44.80 0.28 4.81 16 19 N -0.25 -8.64 12.55 -43.67 -0.55 -9.19 16 20 N -0.50 -14.39 7.37 -51.54 -0.38 -14.77 16 21 H 0.45 9.31 8.96 -213.48 -1.91 7.40 16 22 C 0.14 4.52 7.33 39.20 0.29 4.81 16 23 C -0.18 -4.97 10.05 22.41 0.23 -4.74 16 24 C 0.14 4.27 7.28 22.40 0.16 4.44 16 25 F -0.14 -3.83 17.25 44.97 0.78 -3.06 16 26 C -0.20 -6.60 9.94 22.07 0.22 -6.38 16 27 C 0.00 0.11 9.67 22.25 0.22 0.33 16 28 C -0.19 -7.09 5.58 -20.23 -0.11 -7.20 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 33 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.09 3.18 6.27 -2.39 -0.01 3.16 16 35 H 0.14 3.55 7.86 -2.39 -0.02 3.53 16 36 H 0.01 0.62 5.92 -2.39 -0.01 0.60 16 37 H 0.01 0.31 6.34 -2.39 -0.02 0.29 16 38 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.11 3.00 7.81 -2.39 -0.02 2.98 16 40 H 0.07 2.52 6.50 -2.39 -0.02 2.50 16 41 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 42 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.14 5.26 7.80 -2.91 -0.02 5.24 16 Total: -1.00 -70.37 366.76 2.07 -68.29 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.84 Total: 24.62 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 4.97 Total: 8.15 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.64 Total: -102.93 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.22 Total: -37.94 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -70.37 2.07 -68.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233128546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.490 kcal (2) G-P(sol) polarization free energy of solvation -70.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds