Wall clock time and date at job start Tue Mar 31 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28083 * 119.15391 * 2 1 4 4 C 1.31209 * 122.96548 * 179.49400 * 3 2 1 5 5 C 1.39826 * 119.65951 * 359.39952 * 4 3 2 6 6 C 1.36835 * 118.75549 * 1.20484 * 5 4 3 7 7 C 1.34686 * 119.15755 * 180.02562 * 2 1 3 8 8 O 1.22066 * 120.52458 * 1.01181 * 7 2 1 9 9 C 1.50130 * 122.50264 * 181.61308 * 5 4 3 10 10 N 1.46790 * 109.67252 * 348.51764 * 9 5 4 11 11 C 1.34781 * 121.26727 * 224.45458 * 10 9 5 12 12 O 1.21588 * 119.99996 * 184.62958 * 11 10 9 13 13 N 1.34778 * 119.99704 * 4.62748 * 11 10 9 14 14 C 1.46497 * 119.99781 * 174.90645 * 13 11 10 15 15 C 1.50700 * 109.47196 * 179.97438 * 14 13 11 16 16 O 1.21294 * 119.99936 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00128 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00073 * 179.97438 * 17 15 14 19 19 H 1.07991 * 119.99642 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99859 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00172 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99776 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47285 * 60.00452 * 22 20 18 24 24 H 1.48501 * 109.47136 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47199 * 299.99848 * 22 20 18 26 26 C 1.47174 * 117.46936 * 44.17296 * 10 9 5 27 27 C 1.50625 * 118.00411 * 179.24574 * 4 3 2 28 28 H 1.08993 * 109.47192 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46966 * 120.00001 * 1 2 3 30 30 H 1.09007 * 109.46757 * 239.99460 * 1 2 3 31 31 H 1.07999 * 121.01969 * 179.29319 * 6 5 4 32 32 H 1.09005 * 109.44296 * 228.41140 * 9 5 4 33 33 H 1.09003 * 109.29515 * 108.53225 * 9 5 4 34 34 H 0.96998 * 119.99981 * 354.89930 * 13 11 10 35 35 H 1.09006 * 109.47352 * 59.99666 * 14 13 11 36 36 H 1.09001 * 109.47310 * 300.00228 * 14 13 11 37 37 H 0.97003 * 119.99654 * 359.97438 * 17 15 14 38 38 H 0.96998 * 120.00111 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.71628 * 55.26504 * 26 10 9 40 40 H 1.08996 * 109.72266 * 175.87386 * 26 10 9 41 41 H 1.09003 * 109.22147 * 39.24637 * 27 4 3 42 42 H 1.09000 * 109.22472 * 279.90071 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0890 1.1186 0.0000 4 6 3.3982 1.2058 0.0097 5 6 4.1692 0.0396 0.0334 6 6 3.5319 -1.1712 0.0207 7 6 2.1213 -1.1762 -0.0005 8 8 1.5052 -2.2298 -0.0196 9 6 5.6695 0.0652 0.0813 10 7 6.1489 1.4282 -0.1776 11 6 7.1821 1.6598 -1.0116 12 8 7.6147 2.7882 -1.1449 13 7 7.7356 0.6404 -1.6979 14 6 8.7831 0.9065 -2.6869 15 6 9.2301 -0.3921 -3.3071 16 8 8.7237 -1.4373 -2.9571 17 7 10.1924 -0.3923 -4.2508 18 6 10.5993 -1.5738 -4.8147 19 1 10.1485 -2.5043 -4.5030 20 6 11.5910 -1.5738 -5.7879 21 7 12.1392 -0.4414 -6.1675 22 14 12.1450 -3.1836 -6.5567 23 1 10.9898 -3.8379 -7.2218 24 1 13.2064 -2.9138 -7.5597 25 1 12.6798 -4.0789 -5.4995 26 6 5.4545 2.5330 0.5031 27 6 4.0156 2.5796 -0.0089 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5140 0.8900 31 1 4.0916 -2.0949 0.0267 32 1 6.0683 -0.6102 -0.6757 33 1 6.0039 -0.2563 1.0677 34 1 7.4405 -0.2695 -1.5368 35 1 9.6312 1.3861 -2.1979 36 1 8.3916 1.5644 -3.4628 37 1 10.5970 0.4436 -4.5310 38 1 12.8318 -0.4415 -6.8466 39 1 5.4564 2.3608 1.5795 40 1 5.9555 3.4750 0.2805 41 1 3.4301 3.2448 0.6257 42 1 4.0100 2.9617 -1.0297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248537034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:03 Heat of formation + Delta-G solvation = -18.939660 kcal Electronic energy + Delta-G solvation = -28275.346990 eV Core-core repulsion = 24064.531627 eV Total energy + Delta-G solvation = -4210.815363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.44621 -40.38193 -38.57184 -38.09861 -37.15052 -34.66365 -34.40851 -33.90596 -33.15894 -31.41602 -30.59682 -29.03071 -27.70377 -26.13513 -25.14202 -24.40336 -23.33932 -22.12121 -19.95130 -19.75035 -19.04407 -18.17978 -17.75606 -17.39411 -17.12781 -16.66338 -16.19956 -15.63096 -15.57584 -14.97933 -14.85030 -14.57648 -14.48028 -14.16209 -13.99401 -13.84353 -13.62004 -13.59933 -13.39230 -13.09852 -13.01050 -12.77337 -12.32042 -12.19528 -11.96888 -11.68570 -11.64021 -11.33366 -11.12232 -10.52486 -10.39172 -10.32604 -10.22826 -10.00460 -9.65094 -9.13567 -8.74198 -8.66823 -8.61066 -8.12741 -6.53649 -3.95851 0.12966 1.23586 1.91423 2.43216 3.01407 3.11975 3.19110 3.20528 3.24123 3.65376 3.71490 3.85048 3.99345 4.09806 4.13109 4.35295 4.71419 4.79421 4.82328 4.84245 4.88898 4.93961 5.12871 5.14484 5.15243 5.21627 5.23821 5.35942 5.52438 5.55687 5.69732 5.80350 5.85039 5.95082 6.03016 6.17482 6.63131 6.82487 7.31333 7.43777 7.82493 7.89469 7.97957 8.41969 8.60370 9.02093 9.36478 9.84043 10.63046 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002450 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.021165 B =11425.298193 C =12787.512359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.343 5.343 3 N -0.227 5.227 4 C 0.079 3.921 5 C -0.039 4.039 6 C -0.189 4.189 7 C 0.477 3.523 8 O -0.534 6.534 9 C 0.145 3.855 10 N -0.634 5.634 11 C 0.714 3.286 12 O -0.587 6.587 13 N -0.724 5.724 14 C 0.127 3.873 15 C 0.427 3.573 16 O -0.599 6.599 17 N -0.547 5.547 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.132 3.868 27 C -0.069 4.069 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.169 0.831 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.405 0.595 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.785 7.023 14.195 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.163 5.163 3 N -0.052 5.052 4 C -0.091 4.091 5 C -0.045 4.045 6 C -0.219 4.219 7 C 0.276 3.724 8 O -0.413 6.413 9 C 0.021 3.979 10 N -0.373 5.373 11 C 0.416 3.584 12 O -0.465 6.465 13 N -0.382 5.382 14 C -0.001 4.001 15 C 0.213 3.787 16 O -0.486 6.486 17 N -0.182 5.182 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C 0.008 3.992 27 C -0.109 4.109 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.186 0.814 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.807 7.044 14.091 24.533 hybrid contribution 0.936 -1.434 -0.617 1.820 sum -17.871 5.610 13.473 23.073 Atomic orbital electron populations 1.22133 0.74021 1.04960 1.04428 1.46583 1.09589 1.02749 1.57412 1.70907 1.11713 1.12108 1.10437 1.21453 0.87271 0.96752 1.03620 1.20849 0.97894 0.92947 0.92836 1.22666 0.93150 0.99731 1.06381 1.17949 0.89708 0.84094 0.80638 1.91000 1.69486 1.29029 1.51785 1.20464 0.88294 0.85364 1.03805 1.47152 1.34454 1.06654 1.49015 1.15627 0.79518 0.84793 0.78480 1.90915 1.64705 1.21537 1.69374 1.44951 1.41455 1.09764 1.42077 1.20828 0.90902 0.96980 0.91436 1.19736 0.84633 0.89695 0.84658 1.90487 1.59456 1.33033 1.65642 1.41781 1.32560 1.10411 1.33450 1.19674 1.18484 0.87187 1.18182 0.87716 1.25325 0.96447 0.98846 0.97041 1.69604 1.26805 1.25863 1.31132 0.85872 0.78364 0.81012 0.78730 1.19771 1.20840 1.19756 1.21484 0.89849 0.91761 0.96085 1.20625 0.95638 0.90216 1.04398 0.88235 0.89582 0.89641 0.81386 0.87396 0.88350 0.75479 0.89727 0.89953 0.76987 0.91499 0.90570 0.87053 0.88182 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.23 59.85 0.61 1.20 16 2 N -0.34 -3.53 3.61 -70.17 -0.25 -3.78 16 3 N -0.23 -2.21 10.69 33.70 0.36 -1.85 16 4 C 0.08 0.73 6.73 -82.30 -0.55 0.17 16 5 C -0.04 -0.36 5.80 -104.81 -0.61 -0.97 16 6 C -0.19 -1.96 9.74 -39.01 -0.38 -2.34 16 7 C 0.48 5.88 7.48 -15.22 -0.11 5.76 16 8 O -0.53 -8.15 17.11 4.86 0.08 -8.06 16 9 C 0.15 1.29 6.17 -5.31 -0.03 1.25 16 10 N -0.63 -6.81 2.94 -180.46 -0.53 -7.34 16 11 C 0.71 10.53 8.32 -86.91 -0.72 9.81 16 12 O -0.59 -10.33 15.83 5.29 0.08 -10.25 16 13 N -0.72 -11.38 5.44 -66.41 -0.36 -11.74 16 14 C 0.13 2.24 6.16 -5.20 -0.03 2.20 16 15 C 0.43 9.47 7.85 -10.98 -0.09 9.39 16 16 O -0.60 -14.80 15.24 5.55 0.08 -14.72 16 17 N -0.55 -13.26 5.29 -10.97 -0.06 -13.31 16 18 C -0.31 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.54 13.05 55.50 0.72 -22.82 16 22 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 C 0.13 1.06 6.41 -3.77 -0.02 1.03 16 27 C -0.07 -0.49 6.12 -28.02 -0.17 -0.67 16 28 H 0.10 0.47 8.05 -51.93 -0.42 0.05 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.03 5.81 -51.93 -0.30 0.73 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.41 6.20 5.02 -40.82 -0.21 6.00 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.40 9.22 7.90 -40.82 -0.32 8.90 16 38 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.99 7.06 -51.93 -0.37 0.62 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -34.55 358.77 -6.77 -41.32 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -4.93 Total: 12.73 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: -2.35 Total: 19.12 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.12 Total: -60.84 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: 0.25 Total: -33.03 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.55 -6.77 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248537034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.377 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds