Wall clock time and date at job start Tue Mar 31 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28083 * 119.15391 * 2 1 4 4 C 1.31209 * 122.96548 * 179.49400 * 3 2 1 5 5 C 1.39826 * 119.65951 * 359.39952 * 4 3 2 6 6 C 1.36835 * 118.75549 * 1.20484 * 5 4 3 7 7 C 1.34686 * 119.15755 * 180.02562 * 2 1 3 8 8 O 1.22066 * 120.52458 * 1.01181 * 7 2 1 9 9 C 1.50130 * 122.50264 * 181.61308 * 5 4 3 10 10 N 1.46790 * 109.67252 * 348.51764 * 9 5 4 11 11 C 1.34781 * 121.26727 * 224.45458 * 10 9 5 12 12 O 1.21588 * 119.99996 * 184.62958 * 11 10 9 13 13 N 1.34778 * 119.99704 * 4.62748 * 11 10 9 14 14 C 1.46497 * 119.99781 * 174.90645 * 13 11 10 15 15 C 1.50700 * 109.47196 * 179.97438 * 14 13 11 16 16 O 1.21294 * 119.99936 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00128 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00073 * 179.97438 * 17 15 14 19 19 H 1.07991 * 119.99642 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99859 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00172 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99776 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47285 * 60.00452 * 22 20 18 24 24 H 1.48501 * 109.47136 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47199 * 299.99848 * 22 20 18 26 26 C 1.47174 * 117.46936 * 44.17296 * 10 9 5 27 27 C 1.50625 * 118.00411 * 179.24574 * 4 3 2 28 28 H 1.08993 * 109.47192 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46966 * 120.00001 * 1 2 3 30 30 H 1.09007 * 109.46757 * 239.99460 * 1 2 3 31 31 H 1.07999 * 121.01969 * 179.29319 * 6 5 4 32 32 H 1.09005 * 109.44296 * 228.41140 * 9 5 4 33 33 H 1.09003 * 109.29515 * 108.53225 * 9 5 4 34 34 H 0.96998 * 119.99981 * 354.89930 * 13 11 10 35 35 H 1.09006 * 109.47352 * 59.99666 * 14 13 11 36 36 H 1.09001 * 109.47310 * 300.00228 * 14 13 11 37 37 H 0.97003 * 119.99654 * 359.97438 * 17 15 14 38 38 H 0.96998 * 120.00111 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.71628 * 55.26504 * 26 10 9 40 40 H 1.08996 * 109.72266 * 175.87386 * 26 10 9 41 41 H 1.09003 * 109.22147 * 39.24637 * 27 4 3 42 42 H 1.09000 * 109.22472 * 279.90071 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0890 1.1186 0.0000 4 6 3.3982 1.2058 0.0097 5 6 4.1692 0.0396 0.0334 6 6 3.5319 -1.1712 0.0207 7 6 2.1213 -1.1762 -0.0005 8 8 1.5052 -2.2298 -0.0196 9 6 5.6695 0.0652 0.0813 10 7 6.1489 1.4282 -0.1776 11 6 7.1821 1.6598 -1.0116 12 8 7.6147 2.7882 -1.1449 13 7 7.7356 0.6404 -1.6979 14 6 8.7831 0.9065 -2.6869 15 6 9.2301 -0.3921 -3.3071 16 8 8.7237 -1.4373 -2.9571 17 7 10.1924 -0.3923 -4.2508 18 6 10.5993 -1.5738 -4.8147 19 1 10.1485 -2.5043 -4.5030 20 6 11.5910 -1.5738 -5.7879 21 7 12.1392 -0.4414 -6.1675 22 14 12.1450 -3.1836 -6.5567 23 1 10.9898 -3.8379 -7.2218 24 1 13.2064 -2.9138 -7.5597 25 1 12.6798 -4.0789 -5.4995 26 6 5.4545 2.5330 0.5031 27 6 4.0156 2.5796 -0.0089 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5140 0.8900 31 1 4.0916 -2.0949 0.0267 32 1 6.0683 -0.6102 -0.6757 33 1 6.0039 -0.2563 1.0677 34 1 7.4405 -0.2695 -1.5368 35 1 9.6312 1.3861 -2.1979 36 1 8.3916 1.5644 -3.4628 37 1 10.5970 0.4436 -4.5310 38 1 12.8318 -0.4415 -6.8466 39 1 5.4564 2.3608 1.5795 40 1 5.9555 3.4750 0.2805 41 1 3.4301 3.2448 0.6257 42 1 4.0100 2.9617 -1.0297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248537034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:02 Heat of formation + Delta-G solvation = -45.145574 kcal Electronic energy + Delta-G solvation = -28276.483364 eV Core-core repulsion = 24064.531627 eV Total energy + Delta-G solvation = -4211.951736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.24763 -41.47720 -40.14399 -39.20756 -38.08965 -36.26523 -35.43198 -35.26449 -34.03885 -33.34523 -31.42111 -29.79947 -29.12782 -27.03650 -26.36204 -25.68129 -24.11920 -23.02567 -21.38023 -20.94484 -20.25888 -19.89618 -18.72598 -18.31623 -17.93679 -17.58195 -17.45376 -17.08765 -16.69212 -16.50343 -16.09465 -15.91148 -15.50580 -15.37752 -15.09149 -15.01176 -14.71019 -14.47266 -14.30075 -14.03903 -13.81603 -13.56851 -13.52565 -13.47531 -13.40293 -13.01304 -12.88736 -12.45492 -12.38059 -12.13475 -12.08343 -11.54646 -11.46339 -11.08092 -10.92073 -10.53266 -10.30550 -10.07818 -9.71121 -9.47486 -8.49506 -5.99351 -0.65804 0.40878 1.19314 1.38964 1.40599 1.45594 1.54951 1.91856 2.06967 2.19273 2.28270 2.71021 2.96350 3.16304 3.18038 3.21676 3.39948 3.62531 4.09261 4.13756 4.22040 4.26066 4.28959 4.32939 4.44933 4.46080 4.50649 4.51525 4.54662 4.63777 4.68159 4.86827 4.89086 4.99023 5.16247 5.30684 5.38053 5.40311 5.81140 5.93940 6.44470 6.49876 6.83691 7.03482 7.05361 7.41611 7.49504 7.96795 8.67098 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002450 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.021165 B =11425.298193 C =12787.512359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.343 5.343 3 N -0.227 5.227 4 C 0.076 3.924 5 C -0.027 4.027 6 C -0.201 4.201 7 C 0.464 3.536 8 O -0.577 6.577 9 C 0.145 3.855 10 N -0.627 5.627 11 C 0.715 3.285 12 O -0.617 6.617 13 N -0.727 5.727 14 C 0.141 3.859 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.270 1.270 26 C 0.129 3.871 27 C -0.061 4.061 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.177 0.823 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.408 0.592 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.173 7.904 15.063 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.162 5.162 3 N -0.052 5.052 4 C -0.093 4.093 5 C -0.034 4.034 6 C -0.231 4.231 7 C 0.265 3.735 8 O -0.460 6.460 9 C 0.022 3.978 10 N -0.364 5.364 11 C 0.416 3.584 12 O -0.498 6.498 13 N -0.386 5.386 14 C 0.012 3.988 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.465 4.465 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.195 1.195 26 C 0.007 3.993 27 C -0.101 4.101 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.194 0.806 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.146 0.854 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.232 7.968 14.992 25.654 hybrid contribution 0.983 -1.621 -0.813 2.063 sum -18.249 6.347 14.178 23.966 Atomic orbital electron populations 1.22391 0.72351 1.06680 1.04763 1.46792 1.10765 1.02361 1.56263 1.71002 1.11950 1.11484 1.10762 1.21852 0.87270 0.97551 1.02661 1.20867 0.98036 0.92668 0.91863 1.22738 0.92607 1.00656 1.07115 1.18252 0.90422 0.84192 0.80639 1.90968 1.70313 1.30375 1.54319 1.20609 0.87809 0.84250 1.05174 1.47197 1.33241 1.08210 1.47794 1.15677 0.80111 0.83905 0.78663 1.90897 1.65892 1.22497 1.70474 1.44897 1.41360 1.10280 1.42108 1.20611 0.91950 0.94142 0.92084 1.20457 0.83171 0.90948 0.83392 1.90467 1.59944 1.34713 1.66123 1.41831 1.33472 1.09916 1.34295 1.19679 1.19725 0.87486 1.19657 0.89587 1.26091 0.96022 1.02007 0.96964 1.69669 1.27085 1.27336 1.31473 0.84961 0.78029 0.77244 0.77974 1.19631 1.19700 1.19480 1.21740 0.89635 0.90579 0.97395 1.20650 0.95296 0.89450 1.04721 0.85774 0.89650 0.88999 0.80586 0.88028 0.85425 0.75216 0.88683 0.88902 0.76655 0.91097 0.87739 0.87694 0.85354 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.23 127.77 1.31 2.29 16 2 N -0.34 -6.68 3.61 -494.03 -1.79 -8.46 16 3 N -0.23 -3.96 10.69 -47.29 -0.51 -4.47 16 4 C 0.08 1.22 6.73 43.01 0.29 1.51 16 5 C -0.03 -0.46 5.80 -19.99 -0.12 -0.58 16 6 C -0.20 -4.02 9.74 22.64 0.22 -3.80 16 7 C 0.46 11.35 7.48 84.95 0.64 11.98 16 8 O -0.58 -18.01 17.11 -5.53 -0.09 -18.10 16 9 C 0.15 2.26 6.17 85.40 0.53 2.78 16 10 N -0.63 -12.03 2.94 -843.12 -2.48 -14.51 16 11 C 0.71 19.94 8.32 179.05 1.49 21.43 16 12 O -0.62 -20.86 15.83 -3.99 -0.06 -20.92 16 13 N -0.73 -22.05 5.44 -482.29 -2.62 -24.68 16 14 C 0.14 4.85 6.16 85.63 0.53 5.38 16 15 C 0.43 19.23 7.85 87.66 0.69 19.92 16 16 O -0.62 -31.02 15.24 -3.07 -0.05 -31.06 16 17 N -0.56 -27.39 5.29 -306.99 -1.62 -29.01 16 18 C -0.34 -18.19 9.68 84.04 0.81 -17.38 16 19 H 0.09 4.89 7.16 -2.92 -0.02 4.87 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 21 N -0.92 -48.05 13.05 21.66 0.28 -47.77 16 22 Si 0.99 41.37 29.55 68.60 2.03 43.40 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 C 0.13 1.68 6.41 86.19 0.55 2.24 16 27 C -0.06 -0.70 6.12 29.76 0.18 -0.52 16 28 H 0.12 0.92 8.05 -2.39 -0.02 0.90 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.10 1.79 5.81 -2.38 -0.01 1.78 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.41 12.10 5.02 -92.71 -0.47 11.63 16 35 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.09 3.04 8.14 -2.39 -0.02 3.03 16 37 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 38 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 39 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.10 1.61 7.06 -2.39 -0.02 1.59 16 41 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -74.60 358.77 0.58 -74.03 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.10 Total: 36.36 kcal Atomic # 6 Polarization: 37.61 SS G_CDS: 7.58 Total: 45.19 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -8.73 Total: -128.89 kcal Atomic # 8 Polarization: -69.88 SS G_CDS: -0.20 Total: -70.09 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -74.60 0.58 -74.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248537034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.881 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds