Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34461 * 125.76479 * 2 1 4 4 C 1.38075 * 107.38734 * 179.75525 * 3 2 1 5 5 C 1.47360 * 126.40942 * 180.28306 * 4 3 2 6 6 O 1.34257 * 127.19259 * 48.19926 * 5 4 3 7 7 N 1.20737 * 111.94657 * 179.97438 * 6 5 4 8 8 C 1.29874 * 112.81508 * 359.97438 * 7 6 5 9 9 C 1.39925 * 127.19527 * 227.87621 * 5 4 3 10 10 C 1.46918 * 128.39709 * 359.97438 * 9 5 4 11 11 O 1.21677 * 119.99613 * 5.32806 * 10 9 5 12 12 N 1.34775 * 120.00057 * 185.33118 * 10 9 5 13 13 C 1.46503 * 119.99858 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47045 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47063 * 304.99656 * 14 13 12 16 16 O 1.42902 * 109.47443 * 64.99868 * 14 13 12 17 17 C 1.53002 * 109.47431 * 184.99871 * 14 13 12 18 18 N 1.46497 * 109.47456 * 179.97438 * 17 14 13 19 19 C 1.36940 * 119.99941 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99923 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99600 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99653 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47344 * 89.99938 * 23 21 19 25 25 H 1.48504 * 109.46828 * 209.99691 * 23 21 19 26 26 H 1.48493 * 109.47026 * 329.99724 * 23 21 19 27 27 C 1.41304 * 107.17896 * 0.42105 * 4 3 2 28 28 N 1.30473 * 108.05534 * 359.57297 * 27 4 3 29 29 H 1.09005 * 109.47236 * 269.99655 * 1 2 3 30 30 H 1.08996 * 109.47705 * 29.99721 * 1 2 3 31 31 H 1.08997 * 109.46902 * 150.00233 * 1 2 3 32 32 H 1.07993 * 126.30531 * 359.97438 * 3 2 1 33 33 H 1.08004 * 126.79097 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99874 * 359.97438 * 12 10 9 35 35 H 1.09007 * 109.46791 * 300.00100 * 13 12 10 36 36 H 1.09001 * 109.47077 * 59.99924 * 13 12 10 37 37 H 0.96700 * 113.99579 * 59.99976 * 16 14 13 38 38 H 1.08994 * 109.46953 * 300.00275 * 17 14 13 39 39 H 1.09008 * 109.46991 * 59.99640 * 17 14 13 40 40 H 0.96996 * 119.99783 * 359.97438 * 18 17 14 41 41 H 0.97000 * 120.00159 * 180.02562 * 22 21 19 42 42 H 1.08005 * 125.97086 * 179.83796 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2508 1.0910 0.0000 4 6 3.5612 0.6557 0.0056 5 6 4.7651 1.5054 0.0135 6 8 5.0131 2.5541 0.8144 7 7 6.0882 3.0531 0.5845 8 6 6.7280 2.4522 -0.3727 9 6 5.8914 1.3842 -0.8078 10 6 6.1486 0.3956 -1.8637 11 8 5.2815 -0.3978 -2.1785 12 7 7.3450 0.3676 -2.4837 13 6 7.6016 -0.6186 -3.5363 14 6 9.0238 -0.4363 -4.0700 15 1 9.1597 0.5944 -4.3977 16 8 9.9630 -0.7349 -3.0352 17 6 9.2500 -1.3812 -5.2520 18 7 10.6116 -1.2063 -5.7635 19 6 11.0440 -1.9510 -6.8282 20 1 10.3813 -2.6676 -7.2906 21 6 12.3340 -1.7848 -7.3132 22 7 12.7497 -2.5010 -8.3362 23 14 13.4798 -0.5449 -6.5138 24 1 14.2412 -1.2056 -5.4234 25 1 14.4264 -0.0188 -7.5301 26 1 12.6830 0.5755 -5.9527 27 6 3.5317 -0.7570 -0.0009 28 7 2.2830 -1.1354 -0.0005 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9184 2.1185 -0.0004 33 1 7.7028 2.7093 -0.7602 34 1 8.0361 1.0004 -2.2329 35 1 7.4934 -1.6231 -3.1271 36 1 6.8877 -0.4779 -4.3478 37 1 9.8994 -1.6378 -2.6949 38 1 9.1142 -2.4118 -4.9244 39 1 8.5336 -1.1535 -6.0414 40 1 11.2066 -0.5624 -5.3484 41 1 13.6513 -2.3852 -8.6749 42 1 4.3923 -1.4095 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268317244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = 77.262740 kcal Electronic energy + Delta-G solvation = -27641.908355 eV Core-core repulsion = 23435.264642 eV Total energy + Delta-G solvation = -4206.643714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.21523 -41.53385 -39.73953 -37.77542 -34.65403 -34.37325 -34.21018 -33.87192 -32.60950 -31.49869 -30.07896 -29.45216 -27.31151 -26.17395 -24.47419 -23.29010 -22.26594 -21.60139 -21.40810 -21.17464 -20.41371 -18.67058 -17.95133 -17.79156 -17.58367 -16.67846 -16.13618 -16.11500 -15.91603 -15.47714 -15.04408 -14.76470 -14.66015 -14.51326 -13.91458 -13.68784 -13.67852 -13.52312 -13.24796 -13.24175 -12.88822 -12.74577 -12.40882 -12.04968 -12.00557 -11.31320 -11.25468 -10.87998 -10.84236 -10.83873 -10.33596 -10.18695 -10.14520 -9.90502 -9.78701 -9.57523 -9.23348 -8.94261 -8.67081 -7.27344 -5.78932 -3.15266 0.49833 1.42363 1.53886 1.91298 2.24541 2.63688 3.05207 3.07029 3.38738 3.43398 3.46110 3.88413 3.96298 4.25985 4.32757 4.40694 4.49724 4.58686 4.62450 4.65030 4.73128 4.85428 4.90788 5.04969 5.11105 5.25389 5.32805 5.42498 5.48105 5.49830 5.67765 5.77242 5.82568 6.10085 6.23179 6.38319 6.40017 6.52922 7.21514 7.30334 7.75206 7.81687 7.97065 8.02913 8.39543 9.19117 9.90981 10.10563 11.39057 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.002130 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.536987 B =13144.394939 C =14243.172799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.364 5.364 3 C 0.102 3.898 4 C -0.197 4.197 5 C 0.134 3.866 6 O 0.104 5.896 7 N -0.365 5.365 8 C 0.030 3.970 9 C -0.253 4.253 10 C 0.594 3.406 11 O -0.528 6.528 12 N -0.714 5.714 13 C 0.093 3.907 14 C 0.085 3.915 15 H 0.104 0.896 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.749 5.749 19 C -0.248 4.248 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.888 3.112 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.277 1.277 27 C 0.125 3.875 28 N -0.296 5.296 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.403 0.597 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.377 0.623 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.366 0.634 41 H 0.260 0.740 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.387 10.332 21.462 34.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.142 5.142 3 C -0.049 4.049 4 C -0.210 4.210 5 C 0.067 3.933 6 O 0.043 5.957 7 N -0.070 5.070 8 C -0.150 4.150 9 C -0.261 4.261 10 C 0.380 3.620 11 O -0.405 6.405 12 N -0.365 5.365 13 C -0.031 4.031 14 C 0.025 3.975 15 H 0.122 0.878 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.378 4.378 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.719 3.281 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.063 4.063 28 N -0.116 5.116 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.202 0.798 33 H 0.216 0.784 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.225 0.775 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.200 0.800 41 H 0.070 0.930 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -25.544 10.231 21.704 35.046 hybrid contribution 1.783 0.817 -0.068 1.962 sum -23.761 11.048 21.636 33.982 Atomic orbital electron populations 1.21991 0.73325 1.05111 1.03879 1.48334 1.07230 1.03762 1.54890 1.22953 0.89918 0.93854 0.98143 1.17659 0.88264 0.92028 1.23066 1.22031 0.93840 0.88142 0.89291 1.84900 1.28433 1.35108 1.47247 1.73550 0.94522 1.20578 1.18363 1.25039 1.01930 0.93349 0.94655 1.21366 0.97017 1.03056 1.04623 1.16683 0.82362 0.82612 0.80340 1.90855 1.44440 1.40419 1.64822 1.45695 1.14849 1.37074 1.38921 1.22111 0.97908 0.92572 0.90537 1.22449 0.85802 1.01181 0.88096 0.87792 1.86542 1.59157 1.35858 1.54642 1.21165 0.88907 0.96371 0.93303 1.42556 1.10360 1.48359 1.38289 1.19041 0.97470 1.15768 1.05526 0.89251 1.24682 0.97175 0.99330 0.97899 1.69705 1.18299 1.43182 1.26846 0.86488 0.81196 0.81783 0.78667 1.20996 1.21819 1.20304 1.23890 0.95019 0.92666 0.94677 1.77300 1.01552 1.07337 1.25422 0.90143 0.89066 0.88738 0.79758 0.78386 0.76162 0.90577 0.90039 0.77539 0.94962 0.94490 0.80022 0.93007 0.79340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.31 11.45 59.85 0.68 0.99 16 2 N -0.36 -2.82 3.99 -67.54 -0.27 -3.09 16 3 C 0.10 0.74 11.51 -16.46 -0.19 0.55 16 4 C -0.20 -1.91 5.57 -105.08 -0.58 -2.50 16 5 C 0.13 1.34 7.39 -35.24 -0.26 1.08 16 6 O 0.10 1.03 11.17 16.65 0.19 1.22 16 7 N -0.37 -3.78 11.97 30.85 0.37 -3.41 16 8 C 0.03 0.27 11.68 -16.75 -0.20 0.07 16 9 C -0.25 -2.60 6.36 -104.12 -0.66 -3.27 16 10 C 0.59 6.97 7.80 -12.75 -0.10 6.87 16 11 O -0.53 -7.66 14.53 5.21 0.08 -7.58 16 12 N -0.71 -7.35 5.50 -61.54 -0.34 -7.68 16 13 C 0.09 1.06 5.31 -4.04 -0.02 1.04 16 14 C 0.08 1.13 3.09 -26.73 -0.08 1.05 16 15 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 16 O -0.56 -7.60 13.03 -35.23 -0.46 -8.06 16 17 C 0.13 2.32 5.92 -4.04 -0.02 2.30 16 18 N -0.75 -17.41 5.30 -59.91 -0.32 -17.73 16 19 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 23 Si 0.89 22.27 27.74 -169.99 -4.71 17.56 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 C 0.13 1.35 10.38 -16.96 -0.18 1.17 16 28 N -0.30 -3.24 12.50 30.87 0.39 -2.85 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.20 1.17 7.77 -52.48 -0.41 0.76 16 34 H 0.40 3.47 7.72 -40.82 -0.32 3.15 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.38 4.22 9.05 45.56 0.41 4.63 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.37 8.49 5.41 -40.82 -0.22 8.27 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.19 1.93 7.80 -52.48 -0.41 1.52 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -37.44 370.16 -4.93 -42.37 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.34 Total: 9.95 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.86 Total: 2.26 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.61 Total: -63.29 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.20 Total: -14.43 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.44 -4.93 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268317244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.630 kcal (2) G-P(sol) polarization free energy of solvation -37.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds