Wall clock time and date at job start Tue Mar 31 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34461 * 125.76479 * 2 1 4 4 C 1.38075 * 107.38734 * 179.75525 * 3 2 1 5 5 C 1.47360 * 126.40942 * 180.28306 * 4 3 2 6 6 O 1.34257 * 127.19259 * 48.19926 * 5 4 3 7 7 N 1.20737 * 111.94657 * 179.97438 * 6 5 4 8 8 C 1.29874 * 112.81508 * 359.97438 * 7 6 5 9 9 C 1.39925 * 127.19527 * 227.87621 * 5 4 3 10 10 C 1.46918 * 128.39709 * 359.97438 * 9 5 4 11 11 O 1.21677 * 119.99613 * 5.32806 * 10 9 5 12 12 N 1.34775 * 120.00057 * 185.33118 * 10 9 5 13 13 C 1.46503 * 119.99858 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47045 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47063 * 304.99656 * 14 13 12 16 16 O 1.42902 * 109.47443 * 64.99868 * 14 13 12 17 17 C 1.53002 * 109.47431 * 184.99871 * 14 13 12 18 18 N 1.46497 * 109.47456 * 179.97438 * 17 14 13 19 19 C 1.36940 * 119.99941 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99923 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99600 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99653 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47344 * 89.99938 * 23 21 19 25 25 H 1.48504 * 109.46828 * 209.99691 * 23 21 19 26 26 H 1.48493 * 109.47026 * 329.99724 * 23 21 19 27 27 C 1.41304 * 107.17896 * 0.42105 * 4 3 2 28 28 N 1.30473 * 108.05534 * 359.57297 * 27 4 3 29 29 H 1.09005 * 109.47236 * 269.99655 * 1 2 3 30 30 H 1.08996 * 109.47705 * 29.99721 * 1 2 3 31 31 H 1.08997 * 109.46902 * 150.00233 * 1 2 3 32 32 H 1.07993 * 126.30531 * 359.97438 * 3 2 1 33 33 H 1.08004 * 126.79097 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99874 * 359.97438 * 12 10 9 35 35 H 1.09007 * 109.46791 * 300.00100 * 13 12 10 36 36 H 1.09001 * 109.47077 * 59.99924 * 13 12 10 37 37 H 0.96700 * 113.99579 * 59.99976 * 16 14 13 38 38 H 1.08994 * 109.46953 * 300.00275 * 17 14 13 39 39 H 1.09008 * 109.46991 * 59.99640 * 17 14 13 40 40 H 0.96996 * 119.99783 * 359.97438 * 18 17 14 41 41 H 0.97000 * 120.00159 * 180.02562 * 22 21 19 42 42 H 1.08005 * 125.97086 * 179.83796 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2508 1.0910 0.0000 4 6 3.5612 0.6557 0.0056 5 6 4.7651 1.5054 0.0135 6 8 5.0131 2.5541 0.8144 7 7 6.0882 3.0531 0.5845 8 6 6.7280 2.4522 -0.3727 9 6 5.8914 1.3842 -0.8078 10 6 6.1486 0.3956 -1.8637 11 8 5.2815 -0.3978 -2.1785 12 7 7.3450 0.3676 -2.4837 13 6 7.6016 -0.6186 -3.5363 14 6 9.0238 -0.4363 -4.0700 15 1 9.1597 0.5944 -4.3977 16 8 9.9630 -0.7349 -3.0352 17 6 9.2500 -1.3812 -5.2520 18 7 10.6116 -1.2063 -5.7635 19 6 11.0440 -1.9510 -6.8282 20 1 10.3813 -2.6676 -7.2906 21 6 12.3340 -1.7848 -7.3132 22 7 12.7497 -2.5010 -8.3362 23 14 13.4798 -0.5449 -6.5138 24 1 14.2412 -1.2056 -5.4234 25 1 14.4264 -0.0188 -7.5301 26 1 12.6830 0.5755 -5.9527 27 6 3.5317 -0.7570 -0.0009 28 7 2.2830 -1.1354 -0.0005 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9184 2.1185 -0.0004 33 1 7.7028 2.7093 -0.7602 34 1 8.0361 1.0004 -2.2329 35 1 7.4934 -1.6231 -3.1271 36 1 6.8877 -0.4779 -4.3478 37 1 9.8994 -1.6378 -2.6949 38 1 9.1142 -2.4118 -4.9244 39 1 8.5336 -1.1535 -6.0414 40 1 11.2066 -0.5624 -5.3484 41 1 13.6513 -2.3852 -8.6749 42 1 4.3923 -1.4095 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268317244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:12 Heat of formation + Delta-G solvation = 45.791997 kcal Electronic energy + Delta-G solvation = -27643.273029 eV Core-core repulsion = 23435.264642 eV Total energy + Delta-G solvation = -4208.008387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.93167 -42.16096 -40.67910 -38.94132 -36.18100 -35.41663 -35.02262 -34.56551 -33.46264 -33.28007 -31.08733 -30.42784 -27.93648 -27.37082 -25.55526 -24.16809 -23.64300 -22.82415 -22.21471 -21.84194 -21.26928 -19.82404 -19.34298 -18.67443 -18.35069 -17.73096 -17.18006 -16.86960 -16.52320 -16.44945 -16.41269 -15.84664 -15.68499 -15.42789 -15.31656 -14.99037 -14.56991 -14.37044 -14.20445 -14.05950 -13.94985 -13.64294 -13.35512 -13.28138 -13.17104 -12.80261 -12.72948 -12.22299 -11.92916 -11.86344 -11.82282 -11.56742 -11.29216 -11.01881 -10.92509 -10.87911 -10.53111 -10.13013 -9.33891 -9.30349 -8.02802 -5.36378 -0.22666 0.79123 0.84467 1.36090 1.40558 1.43723 1.50979 1.57338 1.85874 2.20345 2.25993 2.49397 3.21819 3.28173 3.34904 3.39277 3.57128 3.59581 3.83255 3.86451 4.00573 4.06330 4.13760 4.19855 4.27536 4.44742 4.46532 4.63668 4.66526 4.66713 4.74200 4.77997 4.84710 4.95075 5.20155 5.33726 5.39064 5.74850 5.91845 6.20708 6.48063 6.54881 6.79041 7.08721 7.09870 7.17658 7.84219 8.03485 9.18446 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.002130 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.536987 B =13144.394939 C =14243.172799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.362 5.362 3 C 0.120 3.880 4 C -0.226 4.226 5 C 0.143 3.857 6 O 0.101 5.899 7 N -0.384 5.384 8 C 0.044 3.956 9 C -0.269 4.269 10 C 0.596 3.404 11 O -0.560 6.560 12 N -0.703 5.703 13 C 0.104 3.896 14 C 0.106 3.894 15 H 0.111 0.889 16 O -0.563 6.563 17 C 0.123 3.877 18 N -0.752 5.752 19 C -0.237 4.237 20 H 0.057 0.943 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.960 3.040 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.251 1.251 27 C 0.112 3.888 28 N -0.332 5.332 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.414 0.586 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.388 0.612 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.370 0.630 41 H 0.258 0.742 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.287 12.830 23.279 36.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.140 5.140 3 C -0.033 4.033 4 C -0.239 4.239 5 C 0.075 3.925 6 O 0.043 5.957 7 N -0.091 5.091 8 C -0.136 4.136 9 C -0.277 4.277 10 C 0.383 3.617 11 O -0.440 6.440 12 N -0.355 5.355 13 C -0.021 4.021 14 C 0.046 3.954 15 H 0.129 0.871 16 O -0.370 6.370 17 C -0.004 4.004 18 N -0.398 5.398 19 C -0.368 4.368 20 H 0.075 0.925 21 C -0.257 4.257 22 N -0.634 5.634 23 Si 0.787 3.213 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.176 1.176 27 C -0.075 4.075 28 N -0.153 5.153 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.243 0.757 33 H 0.244 0.756 34 H 0.251 0.749 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.203 0.797 41 H 0.067 0.933 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.498 12.738 23.579 37.688 hybrid contribution 1.877 -0.040 -0.626 1.979 sum -24.621 12.697 22.952 35.975 Atomic orbital electron populations 1.22399 0.70796 1.06528 1.05480 1.48726 1.08615 1.03092 1.53534 1.23571 0.88903 0.95268 0.95521 1.17834 0.89379 0.91606 1.25118 1.22147 0.93826 0.87786 0.88709 1.84895 1.28493 1.35156 1.47204 1.73543 0.94909 1.21379 1.19244 1.25450 1.02493 0.92083 0.93572 1.21269 0.97932 1.03596 1.04932 1.16823 0.82128 0.82375 0.80330 1.90846 1.45509 1.41779 1.65887 1.45526 1.14822 1.36853 1.38264 1.21869 0.96430 0.92999 0.90753 1.22145 0.86756 1.00108 0.86404 0.87107 1.86522 1.59267 1.36932 1.54276 1.21400 0.86099 0.97875 0.95040 1.42532 1.12469 1.47675 1.37160 1.19044 0.96873 1.14807 1.06048 0.92537 1.25540 0.99215 1.02019 0.98914 1.69888 1.18754 1.45666 1.29075 0.85334 0.78760 0.79736 0.77436 1.20558 1.22385 1.17603 1.23862 0.95017 0.93423 0.95219 1.77211 1.02005 1.09371 1.26705 0.88428 0.85926 0.89093 0.75736 0.75553 0.74862 0.90499 0.90388 0.76243 0.94667 0.94451 0.79669 0.93322 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 11.45 127.77 1.46 1.81 16 2 N -0.36 -5.07 3.99 -367.61 -1.47 -6.53 16 3 C 0.12 1.48 11.51 84.25 0.97 2.45 16 4 C -0.23 -4.24 5.57 -20.16 -0.11 -4.35 16 5 C 0.14 2.71 7.39 25.08 0.19 2.90 16 6 O 0.10 1.86 11.17 69.79 0.78 2.64 16 7 N -0.38 -7.27 11.97 -56.83 -0.68 -7.95 16 8 C 0.04 0.68 11.68 86.04 1.01 1.69 16 9 C -0.27 -5.18 6.36 -19.54 -0.12 -5.31 16 10 C 0.60 13.31 7.80 86.52 0.67 13.98 16 11 O -0.56 -16.14 14.53 -4.27 -0.06 -16.20 16 12 N -0.70 -13.01 5.50 -466.84 -2.57 -15.58 16 13 C 0.10 2.19 5.31 86.38 0.46 2.65 16 14 C 0.11 2.57 3.09 30.59 0.09 2.67 16 15 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 16 O -0.56 -13.76 13.03 -148.98 -1.94 -15.70 16 17 C 0.12 4.20 5.92 86.38 0.51 4.71 16 18 N -0.75 -33.94 5.30 -343.45 -1.82 -35.76 16 19 C -0.24 -13.41 10.47 84.03 0.88 -12.53 16 20 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.98 -63.12 13.97 21.65 0.30 -62.82 16 23 Si 0.96 45.62 27.74 68.60 1.90 47.52 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 27 C 0.11 2.47 10.38 85.65 0.89 3.36 16 28 N -0.33 -7.31 12.50 -56.25 -0.70 -8.01 16 29 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 30 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.23 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.23 1.92 7.77 -2.91 -0.02 1.89 16 34 H 0.41 5.90 7.72 -92.71 -0.72 5.19 16 35 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.39 7.70 9.05 -74.06 -0.67 7.03 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.37 16.16 5.41 -92.71 -0.50 15.66 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.18 3.99 7.80 -2.91 -0.02 3.97 16 Total: -1.00 -82.50 370.16 0.27 -82.24 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.84 Total: 25.52 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 7.36 Total: 10.63 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -6.93 Total: -136.64 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.22 Total: -29.26 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -82.50 0.27 -82.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268317244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.029 kcal (2) G-P(sol) polarization free energy of solvation -82.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds