Wall clock time and date at job start Tue Mar 31 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34453 * 125.76454 * 2 1 4 4 C 1.38075 * 107.38661 * 179.75664 * 3 2 1 5 5 C 1.47355 * 126.41246 * 180.27582 * 4 3 2 6 6 O 1.34255 * 127.19340 * 47.52545 * 5 4 3 7 7 N 1.20734 * 111.95223 * 179.79124 * 6 5 4 8 8 C 1.29876 * 112.81238 * 0.50049 * 7 6 5 9 9 C 1.39924 * 127.19660 * 227.84340 * 5 4 3 10 10 C 1.46914 * 128.39712 * 0.02562 * 9 5 4 11 11 O 1.21678 * 119.99814 * 5.40481 * 10 9 5 12 12 N 1.34775 * 120.00412 * 185.40287 * 10 9 5 13 13 C 1.46494 * 120.00576 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47721 * 180.02562 * 13 12 10 15 15 H 1.09006 * 109.46550 * 60.00012 * 14 13 12 16 16 O 1.42904 * 109.46725 * 300.00521 * 14 13 12 17 17 C 1.52999 * 109.47454 * 180.02562 * 14 13 12 18 18 N 1.46496 * 109.46759 * 185.00006 * 17 14 13 19 19 C 1.36941 * 119.99728 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99799 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00135 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99829 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00073 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47052 * 90.00390 * 23 21 19 25 25 H 1.48494 * 109.47270 * 210.00267 * 23 21 19 26 26 H 1.48505 * 109.47203 * 330.00611 * 23 21 19 27 27 C 1.41303 * 107.17802 * 0.38439 * 4 3 2 28 28 N 1.30482 * 108.05574 * 359.61152 * 27 4 3 29 29 H 1.09003 * 109.47444 * 270.02528 * 1 2 3 30 30 H 1.09004 * 109.47469 * 30.02225 * 1 2 3 31 31 H 1.08997 * 109.47779 * 150.02311 * 1 2 3 32 32 H 1.08001 * 126.31002 * 359.97438 * 3 2 1 33 33 H 1.08005 * 126.79353 * 179.67472 * 8 7 6 34 34 H 0.97008 * 119.99568 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.47152 * 300.00634 * 13 12 10 36 36 H 1.09004 * 109.46658 * 60.00387 * 13 12 10 37 37 H 0.96694 * 113.99993 * 299.98916 * 16 14 13 38 38 H 1.09000 * 109.46853 * 305.00194 * 17 14 13 39 39 H 1.08997 * 109.47228 * 64.99848 * 17 14 13 40 40 H 0.97000 * 120.00817 * 359.97438 * 18 17 14 41 41 H 0.96996 * 120.00068 * 179.97438 * 22 21 19 42 42 H 1.07998 * 125.97151 * 179.87011 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2508 1.0910 0.0000 4 6 3.5611 0.6557 0.0056 5 6 4.7651 1.5053 0.0133 6 8 5.0078 2.5616 0.8056 7 7 6.0860 3.0562 0.5806 8 6 6.7288 2.4508 -0.3718 9 6 5.8916 1.3835 -0.8076 10 6 6.1486 0.3950 -1.8636 11 8 5.2807 -0.3970 -2.1798 12 7 7.3457 0.3654 -2.4821 13 6 7.6022 -0.6207 -3.5347 14 6 9.0253 -0.4404 -4.0668 15 1 9.7377 -0.5828 -3.2541 16 8 9.1704 0.8766 -4.6021 17 6 9.2930 -1.4699 -5.1665 18 7 10.6915 -1.3766 -5.5927 19 6 11.1650 -2.2065 -6.5737 20 1 10.5074 -2.9293 -7.0335 21 6 12.4900 -2.1178 -6.9780 22 7 13.2913 -1.2366 -6.4181 23 14 13.1358 -3.2493 -8.3167 24 1 12.9478 -2.6060 -9.6418 25 1 14.5808 -3.5074 -8.0923 26 1 12.3920 -4.5341 -8.2803 27 6 3.5316 -0.7570 -0.0001 28 7 2.2828 -1.1354 -0.0001 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 1.9184 2.1186 -0.0004 33 1 7.7048 2.7062 -0.7576 34 1 8.0377 0.9966 -2.2298 35 1 7.4919 -1.6252 -3.1262 36 1 6.8895 -0.4785 -4.3471 37 1 8.5663 1.0736 -5.3310 38 1 9.0959 -2.4709 -4.7828 39 1 8.6401 -1.2716 -6.0165 40 1 11.2821 -0.7272 -5.1801 41 1 14.2173 -1.1749 -6.7002 42 1 4.3921 -1.4096 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268317246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:16 Heat of formation + Delta-G solvation = 73.387864 kcal Electronic energy + Delta-G solvation = -27562.388252 eV Core-core repulsion = 23355.576511 eV Total energy + Delta-G solvation = -4206.811741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.16397 -41.50340 -39.66671 -37.62401 -34.54566 -34.32090 -34.08887 -33.79726 -32.56998 -31.32857 -29.98367 -29.13751 -27.25691 -25.95284 -24.41833 -23.28009 -22.49909 -21.49940 -21.39665 -21.14195 -20.33672 -18.61399 -17.89909 -17.60293 -17.15236 -16.64449 -16.10391 -15.97637 -15.88770 -15.43406 -14.95753 -14.74583 -14.55811 -14.45836 -13.82132 -13.76905 -13.57568 -13.43682 -13.22316 -12.99458 -12.85878 -12.70796 -12.35271 -11.96628 -11.88178 -11.22146 -10.97737 -10.82714 -10.78399 -10.65313 -10.26865 -10.18379 -10.10508 -9.87202 -9.82318 -9.54123 -9.15903 -8.91620 -8.62742 -6.95367 -5.77406 -3.07132 0.54292 1.45893 1.59481 1.94440 2.28382 2.68870 3.10520 3.14080 3.43128 3.48209 3.50007 3.94351 4.00085 4.29212 4.37927 4.44977 4.53263 4.64437 4.67977 4.75997 4.83128 4.91569 4.93447 5.09650 5.21963 5.29954 5.37122 5.53736 5.54535 5.60382 5.78516 5.93013 6.13403 6.17269 6.33208 6.41242 6.49547 6.65261 7.24482 7.38591 7.67497 7.86826 7.90482 8.09855 8.40696 9.52396 10.08717 10.44242 11.44913 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020341 B = 0.002014 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.226507 B =13901.773230 C =15023.881518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.364 5.364 3 C 0.102 3.898 4 C -0.195 4.195 5 C 0.132 3.868 6 O 0.104 5.896 7 N -0.365 5.365 8 C 0.031 3.969 9 C -0.252 4.252 10 C 0.593 3.407 11 O -0.530 6.530 12 N -0.712 5.712 13 C 0.092 3.908 14 C 0.088 3.912 15 H 0.106 0.894 16 O -0.553 6.553 17 C 0.127 3.873 18 N -0.726 5.726 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.125 3.875 28 N -0.297 5.297 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.185 0.815 33 H 0.200 0.800 34 H 0.405 0.595 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.373 0.627 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.388 0.612 41 H 0.255 0.745 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.616 8.114 16.448 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.143 5.143 3 C -0.049 4.049 4 C -0.209 4.209 5 C 0.065 3.935 6 O 0.043 5.957 7 N -0.070 5.070 8 C -0.149 4.149 9 C -0.260 4.260 10 C 0.380 3.620 11 O -0.408 6.408 12 N -0.364 5.364 13 C -0.032 4.032 14 C 0.029 3.971 15 H 0.124 0.876 16 O -0.358 6.358 17 C -0.001 4.001 18 N -0.371 5.371 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.063 4.063 28 N -0.117 5.117 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.202 0.798 33 H 0.217 0.783 34 H 0.240 0.760 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.220 0.780 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -26.468 7.475 17.326 32.506 hybrid contribution 1.249 0.054 -1.588 2.021 sum -25.219 7.528 15.738 30.665 Atomic orbital electron populations 1.21986 0.73366 1.05080 1.03857 1.48323 1.07208 1.03772 1.54950 1.22952 0.89929 0.93842 0.98214 1.17657 0.88266 0.92028 1.22931 1.22023 0.93904 0.88053 0.89485 1.84893 1.28237 1.34710 1.47884 1.73550 0.94318 1.20739 1.18436 1.25068 1.02010 0.93331 0.94493 1.21378 0.97081 1.03056 1.04471 1.16688 0.82418 0.82567 0.80374 1.90848 1.44441 1.40528 1.64941 1.45690 1.14878 1.37115 1.38698 1.22126 0.98012 0.92718 0.90360 1.22416 0.93802 0.83998 0.96928 0.87646 1.86575 1.64260 1.30888 1.54062 1.21196 0.89223 0.95757 0.93965 1.42234 1.05246 1.44202 1.45381 1.19218 0.93967 1.12341 1.11984 0.91195 1.24765 0.96447 0.99444 1.00227 1.69671 1.05705 1.37465 1.44949 0.86175 0.78060 0.80161 0.81684 1.21696 1.21731 1.20739 1.23896 0.95011 0.92694 0.94650 1.77299 1.01564 1.07331 1.25477 0.90165 0.89083 0.88768 0.79763 0.78284 0.76020 0.90149 0.90869 0.77951 0.95320 0.95904 0.77724 0.93465 0.79327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.33 11.44 59.85 0.68 1.01 16 2 N -0.36 -2.90 3.99 -67.54 -0.27 -3.17 16 3 C 0.10 0.76 11.51 -16.46 -0.19 0.57 16 4 C -0.20 -1.96 5.56 -105.08 -0.58 -2.55 16 5 C 0.13 1.38 7.39 -35.24 -0.26 1.12 16 6 O 0.10 1.07 11.17 16.65 0.19 1.25 16 7 N -0.37 -3.95 11.97 30.85 0.37 -3.58 16 8 C 0.03 0.29 11.68 -16.75 -0.20 0.10 16 9 C -0.25 -2.72 6.36 -104.12 -0.66 -3.39 16 10 C 0.59 7.31 7.80 -12.75 -0.10 7.21 16 11 O -0.53 -7.95 14.54 5.21 0.08 -7.87 16 12 N -0.71 -7.88 5.44 -61.54 -0.33 -8.22 16 13 C 0.09 1.13 5.34 -4.05 -0.02 1.11 16 14 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 15 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 16 O -0.55 -8.28 13.03 -35.23 -0.46 -8.74 16 17 C 0.13 2.40 5.90 -4.04 -0.02 2.38 16 18 N -0.73 -18.12 5.55 -59.91 -0.33 -18.45 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 C 0.12 1.39 10.39 -16.96 -0.18 1.21 16 28 N -0.30 -3.32 12.50 30.87 0.39 -2.94 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.19 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.20 1.31 7.77 -52.48 -0.41 0.91 16 34 H 0.40 3.86 7.60 -40.82 -0.31 3.55 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.37 4.64 9.04 45.56 0.41 5.05 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.39 10.38 7.67 -40.82 -0.31 10.06 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.19 2.00 7.80 -52.49 -0.41 1.59 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -36.55 373.28 -5.29 -41.84 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.38 Total: 11.82 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.86 Total: 2.56 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.54 Total: -63.84 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.20 Total: -15.36 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.55 -5.29 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268317246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.224 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds