Wall clock time and date at job start Tue Mar 31 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34453 * 125.76454 * 2 1 4 4 C 1.38075 * 107.38661 * 179.75664 * 3 2 1 5 5 C 1.47355 * 126.41246 * 180.27582 * 4 3 2 6 6 O 1.34255 * 127.19340 * 47.52545 * 5 4 3 7 7 N 1.20734 * 111.95223 * 179.79124 * 6 5 4 8 8 C 1.29876 * 112.81238 * 0.50049 * 7 6 5 9 9 C 1.39924 * 127.19660 * 227.84340 * 5 4 3 10 10 C 1.46914 * 128.39712 * 0.02562 * 9 5 4 11 11 O 1.21678 * 119.99814 * 5.40481 * 10 9 5 12 12 N 1.34775 * 120.00412 * 185.40287 * 10 9 5 13 13 C 1.46494 * 120.00576 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47721 * 180.02562 * 13 12 10 15 15 H 1.09006 * 109.46550 * 60.00012 * 14 13 12 16 16 O 1.42904 * 109.46725 * 300.00521 * 14 13 12 17 17 C 1.52999 * 109.47454 * 180.02562 * 14 13 12 18 18 N 1.46496 * 109.46759 * 185.00006 * 17 14 13 19 19 C 1.36941 * 119.99728 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99799 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00135 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99829 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00073 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47052 * 90.00390 * 23 21 19 25 25 H 1.48494 * 109.47270 * 210.00267 * 23 21 19 26 26 H 1.48505 * 109.47203 * 330.00611 * 23 21 19 27 27 C 1.41303 * 107.17802 * 0.38439 * 4 3 2 28 28 N 1.30482 * 108.05574 * 359.61152 * 27 4 3 29 29 H 1.09003 * 109.47444 * 270.02528 * 1 2 3 30 30 H 1.09004 * 109.47469 * 30.02225 * 1 2 3 31 31 H 1.08997 * 109.47779 * 150.02311 * 1 2 3 32 32 H 1.08001 * 126.31002 * 359.97438 * 3 2 1 33 33 H 1.08005 * 126.79353 * 179.67472 * 8 7 6 34 34 H 0.97008 * 119.99568 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.47152 * 300.00634 * 13 12 10 36 36 H 1.09004 * 109.46658 * 60.00387 * 13 12 10 37 37 H 0.96694 * 113.99993 * 299.98916 * 16 14 13 38 38 H 1.09000 * 109.46853 * 305.00194 * 17 14 13 39 39 H 1.08997 * 109.47228 * 64.99848 * 17 14 13 40 40 H 0.97000 * 120.00817 * 359.97438 * 18 17 14 41 41 H 0.96996 * 120.00068 * 179.97438 * 22 21 19 42 42 H 1.07998 * 125.97151 * 179.87011 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2508 1.0910 0.0000 4 6 3.5611 0.6557 0.0056 5 6 4.7651 1.5053 0.0133 6 8 5.0078 2.5616 0.8056 7 7 6.0860 3.0562 0.5806 8 6 6.7288 2.4508 -0.3718 9 6 5.8916 1.3835 -0.8076 10 6 6.1486 0.3950 -1.8636 11 8 5.2807 -0.3970 -2.1798 12 7 7.3457 0.3654 -2.4821 13 6 7.6022 -0.6207 -3.5347 14 6 9.0253 -0.4404 -4.0668 15 1 9.7377 -0.5828 -3.2541 16 8 9.1704 0.8766 -4.6021 17 6 9.2930 -1.4699 -5.1665 18 7 10.6915 -1.3766 -5.5927 19 6 11.1650 -2.2065 -6.5737 20 1 10.5074 -2.9293 -7.0335 21 6 12.4900 -2.1178 -6.9780 22 7 13.2913 -1.2366 -6.4181 23 14 13.1358 -3.2493 -8.3167 24 1 12.9478 -2.6060 -9.6418 25 1 14.5808 -3.5074 -8.0923 26 1 12.3920 -4.5341 -8.2803 27 6 3.5316 -0.7570 -0.0001 28 7 2.2828 -1.1354 -0.0001 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 1.9184 2.1186 -0.0004 33 1 7.7048 2.7062 -0.7576 34 1 8.0377 0.9966 -2.2298 35 1 7.4919 -1.6252 -3.1262 36 1 6.8895 -0.4785 -4.3471 37 1 8.5663 1.0736 -5.3310 38 1 9.0959 -2.4709 -4.7828 39 1 8.6401 -1.2716 -6.0165 40 1 11.2821 -0.7272 -5.1801 41 1 14.2173 -1.1749 -6.7002 42 1 4.3921 -1.4096 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268317246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:15 Heat of formation + Delta-G solvation = 43.261946 kcal Electronic energy + Delta-G solvation = -27563.694610 eV Core-core repulsion = 23355.576511 eV Total energy + Delta-G solvation = -4208.118099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.93285 -42.15753 -40.67184 -38.87569 -36.07565 -35.39119 -35.01631 -34.55806 -33.28687 -33.17168 -30.89702 -30.32180 -27.86486 -27.27875 -25.64620 -24.33887 -23.74541 -22.74384 -22.20874 -21.83311 -21.24146 -19.45989 -19.14622 -18.67480 -18.33549 -17.76479 -17.14433 -16.87589 -16.50955 -16.41708 -16.38972 -15.84464 -15.70279 -15.36248 -15.31181 -14.92075 -14.50346 -14.36338 -14.14096 -14.05183 -13.81126 -13.63501 -13.28669 -13.22450 -12.94942 -12.75113 -12.72334 -12.15103 -11.95952 -11.92305 -11.79168 -11.56315 -11.27387 -10.98357 -10.90552 -10.86701 -10.52436 -10.12536 -9.33057 -8.99787 -7.94168 -5.23318 -0.22492 0.79528 0.84445 1.36669 1.48386 1.49937 1.57721 1.58429 1.86742 2.19609 2.26859 2.57084 3.22631 3.35621 3.37726 3.52052 3.59812 3.62842 3.83737 3.87211 4.02897 4.10813 4.21985 4.24464 4.40668 4.46627 4.48494 4.65547 4.67117 4.67274 4.74658 4.77633 4.84716 4.96692 5.24136 5.33763 5.39302 5.49467 5.92437 6.27199 6.48400 6.55163 6.82638 7.10154 7.17530 7.34366 8.10163 8.32837 9.28971 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020341 B = 0.002014 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.226507 B =13901.773230 C =15023.881518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.120 3.880 4 C -0.226 4.226 5 C 0.143 3.857 6 O 0.102 5.898 7 N -0.383 5.383 8 C 0.043 3.957 9 C -0.270 4.270 10 C 0.596 3.404 11 O -0.560 6.560 12 N -0.703 5.703 13 C 0.106 3.894 14 C 0.108 3.892 15 H 0.101 0.899 16 O -0.562 6.562 17 C 0.122 3.878 18 N -0.740 5.740 19 C -0.247 4.247 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.269 1.269 27 C 0.111 3.889 28 N -0.332 5.332 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.227 0.773 33 H 0.226 0.774 34 H 0.414 0.586 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.385 0.615 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.358 8.881 16.494 33.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.139 5.139 3 C -0.032 4.032 4 C -0.239 4.239 5 C 0.076 3.924 6 O 0.044 5.956 7 N -0.090 5.090 8 C -0.137 4.137 9 C -0.278 4.278 10 C 0.384 3.616 11 O -0.440 6.440 12 N -0.355 5.355 13 C -0.019 4.019 14 C 0.048 3.952 15 H 0.119 0.881 16 O -0.369 6.369 17 C -0.005 4.005 18 N -0.383 5.383 19 C -0.379 4.379 20 H 0.094 0.906 21 C -0.269 4.269 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.194 1.194 27 C -0.076 4.076 28 N -0.153 5.153 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.243 0.757 33 H 0.242 0.758 34 H 0.251 0.749 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -28.275 8.229 17.383 34.196 hybrid contribution 1.619 -0.175 -1.563 2.257 sum -26.656 8.054 15.820 32.027 Atomic orbital electron populations 1.22403 0.70769 1.06548 1.05485 1.48722 1.08618 1.03072 1.53510 1.23570 0.88864 0.95284 0.95499 1.17827 0.89359 0.91594 1.25112 1.22143 0.93858 0.87653 0.88775 1.84888 1.28227 1.34739 1.47795 1.73541 0.94715 1.21510 1.19237 1.25438 1.02534 0.92193 0.93519 1.21267 0.98062 1.03586 1.04851 1.16820 0.82103 0.82352 0.80353 1.90837 1.45412 1.41809 1.65951 1.45543 1.14911 1.36891 1.38140 1.21858 0.96274 0.93021 0.90723 1.22097 0.95026 0.82758 0.95298 0.88077 1.86555 1.65005 1.30631 1.54699 1.21414 0.86192 0.97404 0.95532 1.42421 1.07472 1.43473 1.44921 1.19643 0.94187 1.12176 1.11923 0.90572 1.25593 0.96975 1.01383 1.02920 1.69827 1.05695 1.39478 1.46781 0.85132 0.77002 0.78715 0.78843 1.21415 1.22227 1.19408 1.23859 0.95029 0.93429 0.95238 1.77211 1.01970 1.09359 1.26715 0.88434 0.85899 0.89069 0.75690 0.75754 0.74933 0.90256 0.90617 0.76592 0.94823 0.95095 0.79114 0.94019 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 11.44 127.77 1.46 1.83 16 2 N -0.36 -5.19 3.99 -367.59 -1.47 -6.65 16 3 C 0.12 1.54 11.51 84.25 0.97 2.51 16 4 C -0.23 -4.40 5.56 -20.16 -0.11 -4.51 16 5 C 0.14 2.87 7.39 25.08 0.19 3.05 16 6 O 0.10 1.98 11.17 69.82 0.78 2.76 16 7 N -0.38 -7.78 11.97 -56.82 -0.68 -8.46 16 8 C 0.04 0.75 11.68 86.04 1.01 1.75 16 9 C -0.27 -5.60 6.36 -19.54 -0.12 -5.72 16 10 C 0.60 14.28 7.80 86.52 0.67 14.96 16 11 O -0.56 -16.78 14.54 -4.28 -0.06 -16.84 16 12 N -0.70 -14.69 5.44 -466.85 -2.54 -17.23 16 13 C 0.11 2.47 5.34 86.38 0.46 2.94 16 14 C 0.11 3.04 3.09 30.59 0.09 3.13 16 15 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 16 O -0.56 -16.09 13.03 -148.98 -1.94 -18.04 16 17 C 0.12 4.48 5.90 86.38 0.51 4.99 16 18 N -0.74 -36.81 5.55 -343.46 -1.91 -38.72 16 19 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 22 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 23 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.11 2.54 10.39 85.65 0.89 3.43 16 28 N -0.33 -7.45 12.50 -56.25 -0.70 -8.15 16 29 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.12 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.23 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.23 2.45 7.77 -2.91 -0.02 2.43 16 34 H 0.41 7.19 7.60 -92.70 -0.70 6.49 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 37 H 0.39 8.96 9.04 -74.06 -0.67 8.29 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.38 20.29 7.67 -92.71 -0.71 19.57 16 41 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.18 4.14 7.80 -2.91 -0.02 4.11 16 Total: -1.00 -79.17 373.28 0.13 -79.04 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.98 Total: 31.72 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 7.32 Total: 11.56 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -7.01 Total: -138.30 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.22 Total: -32.11 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -79.17 0.13 -79.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268317246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.299 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds