Wall clock time and date at job start Tue Mar 31 2020 18:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47268 * 2 1 4 4 C 1.53002 * 109.47238 * 239.99794 * 2 1 3 5 5 N 1.46500 * 109.47329 * 184.99745 * 4 2 1 6 6 C 1.46493 * 120.00080 * 270.00317 * 5 4 2 7 7 C 1.36940 * 119.99369 * 90.00346 * 5 4 2 8 8 H 1.07998 * 120.00375 * 342.71848 * 7 5 4 9 9 C 1.38814 * 119.99472 * 162.99224 * 7 5 4 10 10 N 1.31622 * 119.99984 * 345.45164 * 9 7 5 11 11 Si 1.86799 * 119.99892 * 165.44744 * 9 7 5 12 12 H 1.48498 * 109.46833 * 90.00184 * 11 9 7 13 13 H 1.48501 * 109.47325 * 210.00043 * 11 9 7 14 14 H 1.48499 * 109.47165 * 330.00323 * 11 9 7 15 15 N 1.46507 * 109.47066 * 120.00391 * 2 1 3 16 16 C 1.34773 * 119.99438 * 274.99825 * 15 2 1 17 17 O 1.21592 * 120.00442 * 359.97438 * 16 15 2 18 18 C 1.47523 * 119.99832 * 180.02562 * 16 15 2 19 19 N 1.34403 * 125.76803 * 0.02562 * 18 16 15 20 20 N 1.28765 * 109.52006 * 179.97438 * 19 18 16 21 21 N 1.40209 * 108.36762 * 0.02562 * 20 19 18 22 22 C 1.46505 * 126.59054 * 180.02562 * 21 20 19 23 23 C 1.34812 * 106.81157 * 359.76759 * 21 20 19 24 24 C 1.50699 * 126.57879 * 180.22004 * 23 21 20 25 25 F 1.39904 * 109.47258 * 30.16447 * 24 23 21 26 26 F 1.39896 * 109.47080 * 150.16538 * 24 23 21 27 27 F 1.39907 * 109.47086 * 270.16686 * 24 23 21 28 28 H 1.09001 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47056 * 299.99840 * 1 2 3 30 30 H 1.08998 * 109.47180 * 59.99917 * 1 2 3 31 31 H 1.09003 * 109.46652 * 64.99651 * 4 2 1 32 32 H 1.09001 * 109.47288 * 305.00709 * 4 2 1 33 33 H 1.08996 * 109.47126 * 265.06299 * 6 5 4 34 34 H 1.09001 * 109.47325 * 25.06679 * 6 5 4 35 35 H 1.09001 * 109.47048 * 145.06672 * 6 5 4 36 36 H 0.97000 * 119.99812 * 179.97438 * 10 9 7 37 37 H 0.96991 * 120.00157 * 95.00471 * 15 2 1 38 38 H 1.08994 * 109.46996 * 89.97642 * 22 21 20 39 39 H 1.09004 * 109.47080 * 209.97124 * 22 21 20 40 40 H 1.08997 * 109.47288 * 329.97473 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.3343 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5078 -2.5499 0.0544 9 6 5.4213 -2.2022 -0.8456 10 7 6.0484 -1.6172 -1.8441 11 14 6.3295 -3.4177 0.2439 12 1 6.1913 -4.7853 -0.3180 13 1 7.7671 -3.0503 0.3042 14 1 5.7521 -3.3838 1.6117 15 7 2.0184 -0.6907 1.1962 16 6 2.1471 -0.0184 2.3571 17 8 1.8583 1.1615 2.4116 18 6 2.6393 -0.7136 3.5615 19 7 2.9917 -2.0087 3.6321 20 7 3.3749 -2.2857 4.8298 21 7 3.2760 -1.1220 5.6055 22 6 3.6113 -0.9878 7.0254 23 6 2.8186 -0.1489 4.7923 24 6 2.5531 1.2857 5.1694 25 9 3.4268 1.6682 6.1929 26 9 2.7539 2.1059 4.0541 27 9 1.2320 1.4149 5.6115 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7198 -1.2952 33 1 4.6151 -0.0332 -2.7800 34 1 3.7755 1.1698 -1.7720 35 1 5.2331 0.3544 -1.1564 36 1 6.9823 -1.8170 -2.0139 37 1 2.2491 -1.6318 1.1526 38 1 4.6592 -0.7054 7.1261 39 1 2.9831 -0.2194 7.4760 40 1 3.4411 -1.9386 7.5303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268750332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:52 Heat of formation + Delta-G solvation = -47.839171 kcal Electronic energy + Delta-G solvation = -30916.682912 eV Core-core repulsion = 26162.757632 eV Total energy + Delta-G solvation = -4753.925280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.37393 -47.98745 -47.66671 -42.54528 -39.18261 -36.40074 -35.13080 -34.06019 -32.09650 -31.32250 -30.13911 -28.19530 -26.61378 -26.15606 -25.58482 -23.90393 -22.25340 -21.68607 -20.66337 -19.86594 -18.80162 -18.76990 -18.42239 -17.66608 -16.56376 -16.53704 -15.85474 -15.52591 -15.01674 -14.83853 -14.69738 -14.42885 -14.30227 -14.08162 -14.02742 -13.80496 -13.72774 -13.55049 -13.48944 -13.19042 -12.91788 -12.90153 -12.19697 -12.08199 -11.93624 -11.58427 -11.53559 -11.02916 -10.83096 -10.80344 -10.74592 -10.37925 -10.27095 -9.98808 -9.81514 -9.69488 -9.62714 -8.52022 -8.46443 -6.78092 -5.69701 -3.11091 0.45765 1.40222 1.59417 2.26839 3.22341 3.33310 3.41249 3.48158 3.50844 3.54071 3.68243 4.05504 4.07287 4.31781 4.53328 4.58857 4.73051 4.87720 5.02388 5.33659 5.48471 5.50823 5.63209 5.74814 5.82910 5.94912 6.15105 6.20868 6.43727 6.48004 6.78417 6.84054 7.02528 7.47551 7.55292 7.71233 7.84141 8.03620 8.38532 8.57590 9.25481 9.89581 10.36191 11.35271 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.004947 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.282394 B = 5658.808891 C = 6955.109225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.082 0.918 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.165 3.835 7 C -0.247 4.247 8 H 0.069 0.931 9 C 0.002 3.998 10 N -0.907 5.907 11 Si 0.894 3.106 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.274 1.274 15 N -0.669 5.669 16 C 0.588 3.412 17 O -0.534 6.534 18 C -0.016 4.016 19 N -0.189 5.189 20 N -0.028 5.028 21 N -0.332 5.332 22 C 0.078 3.922 23 C -0.005 4.005 24 C 0.547 3.453 25 F -0.177 7.177 26 F -0.120 7.120 27 F -0.164 7.164 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.026 0.974 34 H -0.004 1.004 35 H 0.047 0.953 36 H 0.251 0.749 37 H 0.412 0.588 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 4.170 16.550 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.100 0.900 4 C 0.013 3.987 5 N -0.323 5.323 6 C 0.021 3.979 7 C -0.376 4.376 8 H 0.087 0.913 9 C -0.196 4.196 10 N -0.553 5.553 11 Si 0.723 3.277 12 H -0.214 1.214 13 H -0.219 1.219 14 H -0.200 1.200 15 N -0.319 5.319 16 C 0.370 3.630 17 O -0.411 6.411 18 C -0.158 4.158 19 N -0.060 5.060 20 N -0.008 5.008 21 N -0.119 5.119 22 C -0.062 4.062 23 C -0.144 4.144 24 C 0.490 3.510 25 F -0.159 7.159 26 F -0.101 7.101 27 F -0.145 7.145 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.014 0.986 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.250 0.750 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.300 3.518 16.519 18.818 hybrid contribution 0.709 -0.027 0.920 1.162 sum -7.591 3.492 17.438 19.337 Atomic orbital electron populations 1.22129 0.96150 1.01656 1.01857 1.22042 0.92459 0.98486 0.86137 0.89969 1.21056 0.86090 0.98395 0.93194 1.43909 0.98902 1.21311 1.68219 1.20801 0.93045 0.85999 0.98070 1.19070 0.94064 1.03956 1.20544 0.91306 1.24856 0.98070 0.99162 0.97492 1.70108 1.10686 1.45930 1.28573 0.86403 0.79252 0.80929 0.81071 1.21441 1.21855 1.19959 1.45764 1.63289 1.14876 1.07983 1.16684 0.78681 0.85839 0.81846 1.90858 1.51674 1.14046 1.84489 1.21664 1.08424 0.90977 0.94729 1.74852 1.08052 1.12286 1.10823 1.82119 1.19644 1.02796 0.96272 1.50311 1.42904 1.07196 1.11450 1.22467 1.03930 1.06020 0.73816 1.21591 1.07327 0.91970 0.93527 1.16889 0.74712 0.83776 0.75627 1.93209 1.69708 1.92384 1.60590 1.93485 1.94333 1.72528 1.49725 1.93263 1.35516 1.96246 1.89472 0.92732 0.92750 0.91813 0.92670 0.92862 0.95529 0.98580 0.93414 0.93867 0.75032 0.88179 0.88235 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.12 2.05 2.88 -67.92 -0.20 1.85 16 3 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 4 C 0.14 2.72 5.30 -4.04 -0.02 2.70 16 5 N -0.60 -14.57 2.82 -181.12 -0.51 -15.08 16 6 C 0.17 4.10 8.97 59.84 0.54 4.63 16 7 C -0.25 -6.50 8.81 -15.06 -0.13 -6.63 16 8 H 0.07 1.74 6.40 -52.49 -0.34 1.40 16 9 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 10 N -0.91 -26.45 10.45 55.49 0.58 -25.87 16 11 Si 0.89 22.14 29.58 -169.99 -5.03 17.11 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 N -0.67 -12.50 4.48 -54.85 -0.25 -12.75 16 16 C 0.59 11.08 7.73 -12.48 -0.10 10.98 16 17 O -0.53 -10.61 12.71 5.28 0.07 -10.54 16 18 C -0.02 -0.28 6.96 -83.55 -0.58 -0.86 16 19 N -0.19 -3.39 12.04 32.85 0.40 -2.99 16 20 N -0.03 -0.44 13.78 60.35 0.83 0.39 16 21 N -0.33 -4.13 4.03 -63.59 -0.26 -4.39 16 22 C 0.08 0.51 10.50 59.85 0.63 1.14 16 23 C -0.01 -0.07 6.46 -81.88 -0.53 -0.60 16 24 C 0.55 7.30 3.14 36.01 0.11 7.41 16 25 F -0.18 -1.92 15.33 2.25 0.03 -1.89 16 26 F -0.12 -1.96 13.42 2.25 0.03 -1.93 16 27 F -0.16 -2.08 17.30 2.25 0.04 -2.04 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 34 H 0.00 -0.10 8.03 -51.93 -0.42 -0.51 16 35 H 0.05 1.30 6.95 -51.93 -0.36 0.94 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.41 7.93 6.27 -40.82 -0.26 7.68 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.49 7.11 -51.93 -0.37 0.12 16 40 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -32.29 347.58 -3.45 -35.74 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.61 Total: 0.32 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: -0.01 Total: 18.67 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.79 Total: -60.68 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.10 Total: -5.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.29 -3.45 -35.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268750332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.101 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds