Wall clock time and date at job start Tue Mar 31 2020 18:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47268 * 2 1 4 4 C 1.53002 * 109.47238 * 239.99794 * 2 1 3 5 5 N 1.46500 * 109.47329 * 184.99745 * 4 2 1 6 6 C 1.46493 * 120.00080 * 270.00317 * 5 4 2 7 7 C 1.36940 * 119.99369 * 90.00346 * 5 4 2 8 8 H 1.07998 * 120.00375 * 342.71848 * 7 5 4 9 9 C 1.38814 * 119.99472 * 162.99224 * 7 5 4 10 10 N 1.31622 * 119.99984 * 345.45164 * 9 7 5 11 11 Si 1.86799 * 119.99892 * 165.44744 * 9 7 5 12 12 H 1.48498 * 109.46833 * 90.00184 * 11 9 7 13 13 H 1.48501 * 109.47325 * 210.00043 * 11 9 7 14 14 H 1.48499 * 109.47165 * 330.00323 * 11 9 7 15 15 N 1.46507 * 109.47066 * 120.00391 * 2 1 3 16 16 C 1.34773 * 119.99438 * 274.99825 * 15 2 1 17 17 O 1.21592 * 120.00442 * 359.97438 * 16 15 2 18 18 C 1.47523 * 119.99832 * 180.02562 * 16 15 2 19 19 N 1.34403 * 125.76803 * 0.02562 * 18 16 15 20 20 N 1.28765 * 109.52006 * 179.97438 * 19 18 16 21 21 N 1.40209 * 108.36762 * 0.02562 * 20 19 18 22 22 C 1.46505 * 126.59054 * 180.02562 * 21 20 19 23 23 C 1.34812 * 106.81157 * 359.76759 * 21 20 19 24 24 C 1.50699 * 126.57879 * 180.22004 * 23 21 20 25 25 F 1.39904 * 109.47258 * 30.16447 * 24 23 21 26 26 F 1.39896 * 109.47080 * 150.16538 * 24 23 21 27 27 F 1.39907 * 109.47086 * 270.16686 * 24 23 21 28 28 H 1.09001 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47056 * 299.99840 * 1 2 3 30 30 H 1.08998 * 109.47180 * 59.99917 * 1 2 3 31 31 H 1.09003 * 109.46652 * 64.99651 * 4 2 1 32 32 H 1.09001 * 109.47288 * 305.00709 * 4 2 1 33 33 H 1.08996 * 109.47126 * 265.06299 * 6 5 4 34 34 H 1.09001 * 109.47325 * 25.06679 * 6 5 4 35 35 H 1.09001 * 109.47048 * 145.06672 * 6 5 4 36 36 H 0.97000 * 119.99812 * 179.97438 * 10 9 7 37 37 H 0.96991 * 120.00157 * 95.00471 * 15 2 1 38 38 H 1.08994 * 109.46996 * 89.97642 * 22 21 20 39 39 H 1.09004 * 109.47080 * 209.97124 * 22 21 20 40 40 H 1.08997 * 109.47288 * 329.97473 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.3343 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5078 -2.5499 0.0544 9 6 5.4213 -2.2022 -0.8456 10 7 6.0484 -1.6172 -1.8441 11 14 6.3295 -3.4177 0.2439 12 1 6.1913 -4.7853 -0.3180 13 1 7.7671 -3.0503 0.3042 14 1 5.7521 -3.3838 1.6117 15 7 2.0184 -0.6907 1.1962 16 6 2.1471 -0.0184 2.3571 17 8 1.8583 1.1615 2.4116 18 6 2.6393 -0.7136 3.5615 19 7 2.9917 -2.0087 3.6321 20 7 3.3749 -2.2857 4.8298 21 7 3.2760 -1.1220 5.6055 22 6 3.6113 -0.9878 7.0254 23 6 2.8186 -0.1489 4.7923 24 6 2.5531 1.2857 5.1694 25 9 3.4268 1.6682 6.1929 26 9 2.7539 2.1059 4.0541 27 9 1.2320 1.4149 5.6115 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7198 -1.2952 33 1 4.6151 -0.0332 -2.7800 34 1 3.7755 1.1698 -1.7720 35 1 5.2331 0.3544 -1.1564 36 1 6.9823 -1.8170 -2.0139 37 1 2.2491 -1.6318 1.1526 38 1 4.6592 -0.7054 7.1261 39 1 2.9831 -0.2194 7.4760 40 1 3.4411 -1.9386 7.5303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268750332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:51 Heat of formation + Delta-G solvation = -70.400822 kcal Electronic energy + Delta-G solvation = -30917.661259 eV Core-core repulsion = 26162.757632 eV Total energy + Delta-G solvation = -4754.903627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.42378 -48.98075 -48.80303 -43.70252 -40.61896 -38.07613 -36.17842 -35.75163 -33.39892 -32.99137 -31.65498 -29.11231 -28.04704 -27.65544 -27.35489 -25.19178 -23.61027 -23.08747 -22.11206 -21.33045 -19.87995 -19.84439 -19.52600 -19.03407 -18.39221 -17.62002 -17.18507 -16.93480 -16.72160 -15.99339 -15.81634 -15.61860 -15.52109 -15.43784 -15.27591 -15.06906 -14.95037 -14.79255 -14.63847 -14.53663 -14.34656 -14.04466 -13.75269 -13.45459 -13.14741 -13.07178 -12.80464 -12.70927 -12.64243 -12.56687 -12.15346 -12.02608 -11.87421 -11.80899 -11.75611 -11.14553 -10.81700 -10.56922 -9.93819 -8.78405 -7.78914 -5.19913 -0.66882 0.30685 0.39461 1.25695 1.43226 1.46295 1.56081 1.97223 2.11206 2.22627 2.52297 2.60179 2.98796 3.01588 3.19103 3.35736 3.55993 3.72948 4.03214 4.13594 4.18240 4.37970 4.44471 4.47884 4.53677 4.80301 4.83580 4.88520 4.90270 5.03752 5.19055 5.36584 5.48971 5.58898 5.66075 5.77436 6.31234 6.34546 6.60560 7.11139 7.20594 7.91443 8.33682 9.25251 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.004947 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.282394 B = 5658.808891 C = 6955.109225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 H 0.063 0.937 4 C 0.140 3.860 5 N -0.616 5.616 6 C 0.181 3.819 7 C -0.233 4.233 8 H 0.079 0.921 9 C -0.056 4.056 10 N -0.940 5.940 11 Si 0.947 3.053 12 H -0.284 1.284 13 H -0.302 1.302 14 H -0.272 1.272 15 N -0.675 5.675 16 C 0.585 3.415 17 O -0.550 6.550 18 C -0.043 4.043 19 N -0.218 5.218 20 N -0.040 5.040 21 N -0.308 5.308 22 C 0.059 3.941 23 C 0.000 4.000 24 C 0.556 3.444 25 F -0.159 7.159 26 F -0.139 7.139 27 F -0.158 7.158 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.004 0.996 34 H 0.024 0.976 35 H 0.014 0.986 36 H 0.243 0.757 37 H 0.408 0.592 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.957 4.125 18.553 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.081 0.919 4 C 0.014 3.986 5 N -0.338 5.338 6 C 0.036 3.964 7 C -0.364 4.364 8 H 0.096 0.904 9 C -0.250 4.250 10 N -0.589 5.589 11 Si 0.777 3.223 12 H -0.210 1.210 13 H -0.229 1.229 14 H -0.197 1.197 15 N -0.324 5.324 16 C 0.367 3.633 17 O -0.428 6.428 18 C -0.186 4.186 19 N -0.088 5.088 20 N -0.020 5.020 21 N -0.095 5.095 22 C -0.079 4.079 23 C -0.141 4.141 24 C 0.498 3.502 25 F -0.140 7.140 26 F -0.120 7.120 27 F -0.139 7.139 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.022 0.978 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.245 0.755 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.610 3.457 18.563 21.187 hybrid contribution 1.042 0.041 0.448 1.134 sum -8.568 3.498 19.010 21.143 Atomic orbital electron populations 1.22024 0.93106 1.02742 1.02711 1.21894 0.94684 0.96829 0.85023 0.91852 1.21279 0.83070 0.99520 0.94757 1.44130 1.01055 1.20600 1.68030 1.20501 0.92455 0.87445 0.96046 1.19407 0.94000 1.03615 1.19328 0.90370 1.25490 0.99233 1.01364 0.98898 1.70253 1.10353 1.47952 1.30315 0.85542 0.77588 0.79405 0.79743 1.21050 1.22909 1.19746 1.45836 1.63532 1.14661 1.08395 1.16885 0.78340 0.85737 0.82313 1.90839 1.52440 1.14602 1.84910 1.21545 1.10406 0.91362 0.95282 1.74807 1.09196 1.12770 1.12075 1.82013 1.20022 1.03941 0.96059 1.50705 1.40311 1.05672 1.12829 1.23134 1.05626 1.08494 0.70659 1.21671 1.06668 0.92716 0.93080 1.16672 0.75162 0.82822 0.75503 1.93246 1.69107 1.92136 1.59494 1.93445 1.94496 1.72991 1.51098 1.93276 1.35194 1.96140 1.89297 0.91517 0.93274 0.89552 0.90678 0.91950 0.97758 0.95742 0.96732 0.94729 0.75493 0.86159 0.86012 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.48 71.98 0.68 -3.16 16 2 C 0.12 4.16 2.88 44.99 0.13 4.29 16 3 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 4 C 0.14 5.18 5.30 86.38 0.46 5.63 16 5 N -0.62 -29.63 2.82 -726.95 -2.05 -31.68 16 6 C 0.18 9.04 8.97 127.77 1.15 10.18 16 7 C -0.23 -12.26 8.81 84.03 0.74 -11.52 16 8 H 0.08 3.91 6.40 -2.91 -0.02 3.89 16 9 C -0.06 -3.13 5.09 84.86 0.43 -2.70 16 10 N -0.94 -56.16 10.45 21.65 0.23 -55.93 16 11 Si 0.95 46.26 29.58 68.60 2.03 48.29 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 13 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 14 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 15 N -0.68 -24.88 4.48 -445.71 -2.00 -26.88 16 16 C 0.58 21.92 7.73 86.69 0.67 22.59 16 17 O -0.55 -21.74 12.71 -4.00 -0.05 -21.80 16 18 C -0.04 -1.49 6.96 40.82 0.28 -1.20 16 19 N -0.22 -7.71 12.04 -49.99 -0.60 -8.32 16 20 N -0.04 -1.20 13.78 37.02 0.51 -0.69 16 21 N -0.31 -7.00 4.03 -355.10 -1.43 -8.43 16 22 C 0.06 0.56 10.50 127.77 1.34 1.90 16 23 C 0.00 -0.01 6.46 41.72 0.27 0.26 16 24 C 0.56 13.86 3.14 71.24 0.22 14.08 16 25 F -0.16 -3.01 15.33 44.97 0.69 -2.32 16 26 F -0.14 -4.45 13.42 44.97 0.60 -3.84 16 27 F -0.16 -3.71 17.30 44.97 0.78 -2.93 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 32 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 33 H 0.00 0.22 7.51 -2.39 -0.02 0.21 16 34 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 35 H 0.01 0.79 6.95 -2.39 -0.02 0.77 16 36 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 37 H 0.41 15.57 6.27 -92.72 -0.58 14.99 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.12 0.70 7.11 -2.39 -0.02 0.68 16 40 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.94 347.58 5.60 -65.34 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.53 Total: 8.83 kcal Atomic # 6 Polarization: 33.98 SS G_CDS: 6.38 Total: 40.36 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -5.35 Total: -131.93 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 9 Polarization: -11.16 SS G_CDS: 2.07 Total: -9.09 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -70.94 5.60 -65.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268750332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.060 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds