Wall clock time and date at job start Tue Mar 31 2020 18:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47114 * 2 1 4 4 C 1.52997 * 109.47337 * 119.99974 * 2 1 3 5 5 N 1.46504 * 109.47379 * 175.00014 * 4 2 1 6 6 C 1.46503 * 120.00082 * 270.00164 * 5 4 2 7 7 C 1.36940 * 119.99660 * 89.99633 * 5 4 2 8 8 H 1.07997 * 120.00267 * 23.63511 * 7 5 4 9 9 C 1.38814 * 119.99454 * 203.62915 * 7 5 4 10 10 N 1.31617 * 120.00665 * 11.29814 * 9 7 5 11 11 Si 1.86805 * 119.99609 * 191.29597 * 9 7 5 12 12 H 1.48508 * 109.46772 * 90.00331 * 11 9 7 13 13 H 1.48500 * 109.47203 * 209.99999 * 11 9 7 14 14 H 1.48500 * 109.47289 * 330.00355 * 11 9 7 15 15 N 1.46501 * 109.47021 * 239.99808 * 2 1 3 16 16 C 1.34777 * 119.99844 * 84.99967 * 15 2 1 17 17 O 1.21596 * 119.99902 * 359.97438 * 16 15 2 18 18 C 1.47518 * 120.00359 * 180.02562 * 16 15 2 19 19 N 1.34403 * 125.76607 * 0.02562 * 18 16 15 20 20 N 1.28771 * 109.52336 * 179.97438 * 19 18 16 21 21 N 1.40208 * 108.36335 * 0.02562 * 20 19 18 22 22 C 1.46500 * 126.59350 * 179.97438 * 21 20 19 23 23 C 1.34815 * 106.81251 * 359.77395 * 21 20 19 24 24 C 1.50705 * 126.57779 * 180.21403 * 23 21 20 25 25 F 1.39894 * 109.46974 * 30.17006 * 24 23 21 26 26 F 1.39908 * 109.46802 * 150.16738 * 24 23 21 27 27 F 1.39899 * 109.47171 * 270.16341 * 24 23 21 28 28 H 1.09007 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47212 * 300.00012 * 1 2 3 30 30 H 1.08991 * 109.47346 * 60.00078 * 1 2 3 31 31 H 1.09000 * 109.47233 * 294.99790 * 4 2 1 32 32 H 1.08995 * 109.47285 * 55.00340 * 4 2 1 33 33 H 1.09005 * 109.47035 * 94.54567 * 6 5 4 34 34 H 1.08993 * 109.46868 * 214.55098 * 6 5 4 35 35 H 1.08995 * 109.46794 * 334.54688 * 6 5 4 36 36 H 0.96991 * 120.00331 * 179.97438 * 10 9 7 37 37 H 0.96995 * 120.00443 * 264.99915 * 15 2 1 38 38 H 1.08992 * 109.47334 * 89.97352 * 22 21 20 39 39 H 1.08998 * 109.47527 * 209.98209 * 22 21 20 40 40 H 1.09006 * 109.46802 * 329.97652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.2799 0.1650 1.7239 8 1 3.8835 0.8070 2.4966 9 6 5.5799 0.3445 1.2715 10 7 5.9918 -0.2793 0.1882 11 14 6.7447 1.4715 2.2002 12 1 7.4753 0.6888 3.2294 13 1 7.7172 2.0695 1.2505 14 1 5.9678 2.5520 2.8592 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0183 -2.3571 17 8 1.8573 1.1614 -2.4118 18 6 2.6381 -0.7138 -3.5618 19 7 2.9887 -2.0094 -3.6329 20 7 3.3704 -2.2868 -4.8310 21 7 3.2736 -1.1225 -5.6062 22 6 3.6081 -0.9884 -7.0262 23 6 2.8092 -0.1512 -4.7947 24 6 2.5342 1.2811 -5.1743 25 9 2.1619 1.3432 -6.5214 26 9 1.4975 1.7831 -4.3803 27 9 3.6879 2.0464 -4.9735 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7517 -0.1583 2.1369 32 1 1.6055 -1.7198 1.2951 33 1 4.3535 -1.7640 -0.4802 34 1 5.0470 -2.2389 1.0889 35 1 3.4426 -2.8399 0.6066 36 1 6.9001 -0.1536 -0.1281 37 1 2.2490 -1.6318 -1.1526 38 1 2.7258 -1.2028 -7.6292 39 1 3.9460 0.0286 -7.2254 40 1 4.4016 -1.6912 -7.2804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268750333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:54 Heat of formation + Delta-G solvation = -50.018778 kcal Electronic energy + Delta-G solvation = -30970.088786 eV Core-core repulsion = 26216.068992 eV Total energy + Delta-G solvation = -4754.019795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.28955 -47.89328 -47.58929 -42.48835 -39.08856 -36.33103 -35.07773 -33.99817 -32.02589 -31.21348 -30.19564 -28.15161 -26.54675 -26.10973 -25.55822 -23.83913 -22.19079 -21.61779 -20.55780 -19.90943 -18.71031 -18.67730 -18.34656 -17.49284 -16.74766 -16.47152 -15.76475 -15.43040 -14.84676 -14.74363 -14.64822 -14.45159 -14.16590 -13.98030 -13.91033 -13.74546 -13.70467 -13.51635 -13.33682 -13.22701 -13.05109 -12.80534 -12.13225 -12.03521 -11.88986 -11.52106 -11.39488 -11.04459 -10.80567 -10.74808 -10.74150 -10.49371 -10.15325 -9.92464 -9.81941 -9.59338 -9.56593 -8.56932 -8.36633 -6.69588 -5.67102 -3.14129 0.52118 1.45608 1.64851 2.34123 3.29443 3.41967 3.42261 3.48683 3.49889 3.61025 3.75523 4.12619 4.15154 4.37680 4.54943 4.62443 4.79140 4.91745 5.07270 5.37857 5.53077 5.55449 5.73118 5.80110 5.89708 6.03139 6.15014 6.27759 6.51244 6.56471 6.73792 6.90066 7.12098 7.39961 7.58933 7.77453 7.86084 8.06359 8.44330 8.65562 9.28029 9.90596 10.39032 11.37384 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.004381 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.807940 B = 6389.122732 C = 6812.092167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.090 0.910 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.161 3.839 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.279 1.279 15 N -0.673 5.673 16 C 0.592 3.408 17 O -0.527 6.527 18 C -0.012 4.012 19 N -0.193 5.193 20 N -0.030 5.030 21 N -0.331 5.331 22 C 0.079 3.921 23 C -0.003 4.003 24 C 0.547 3.453 25 F -0.179 7.179 26 F -0.123 7.123 27 F -0.159 7.159 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.042 0.958 35 H -0.004 1.004 36 H 0.250 0.750 37 H 0.404 0.596 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -1.966 -14.744 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.108 0.892 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.016 3.984 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.205 1.205 15 N -0.322 5.322 16 C 0.374 3.626 17 O -0.403 6.403 18 C -0.154 4.154 19 N -0.064 5.064 20 N -0.010 5.010 21 N -0.118 5.118 22 C -0.062 4.062 23 C -0.142 4.142 24 C 0.489 3.511 25 F -0.161 7.161 26 F -0.103 7.103 27 F -0.140 7.140 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.060 0.940 37 H 0.240 0.760 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.503 -2.595 -14.854 17.311 hybrid contribution 0.866 1.335 -0.022 1.592 sum -7.637 -1.260 -14.876 16.769 Atomic orbital electron populations 1.22159 0.96547 1.01276 1.01874 1.22013 0.91883 0.99311 0.85900 0.89204 1.21210 0.85891 0.97325 0.94159 1.43914 0.99025 1.20927 1.68117 1.20863 0.94529 0.85016 0.97994 1.19172 0.94577 1.10581 1.14222 0.91398 1.25028 0.98911 0.99049 0.96313 1.70051 1.17082 1.45600 1.21980 0.86284 0.81013 0.80491 0.78897 1.21605 1.21898 1.20483 1.45581 1.64048 1.14169 1.08370 1.16607 0.78336 0.85901 0.81771 1.90868 1.51203 1.14107 1.84152 1.21645 1.08159 0.90964 0.94597 1.74775 1.08409 1.12351 1.10875 1.82062 1.19799 1.02831 0.96298 1.50247 1.42831 1.07287 1.11473 1.22454 1.04171 1.05718 0.73830 1.21583 1.07112 0.92010 0.93525 1.16894 0.76373 0.83335 0.74453 1.93195 1.91713 1.96823 1.34349 1.93462 1.57103 1.87602 1.72182 1.93299 1.49320 1.76785 1.94607 0.93071 0.91865 0.92807 0.92065 0.93873 0.94775 0.93948 0.98581 0.93955 0.76046 0.88295 0.88248 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.18 2.88 -67.93 -0.20 1.98 16 3 H 0.09 2.00 7.58 -51.93 -0.39 1.60 16 4 C 0.14 2.77 5.33 -4.04 -0.02 2.75 16 5 N -0.60 -14.54 2.78 -181.12 -0.50 -15.05 16 6 C 0.16 3.86 7.61 59.85 0.46 4.31 16 7 C -0.26 -6.97 9.66 -15.06 -0.15 -7.11 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -26.43 10.66 55.49 0.59 -25.84 16 11 Si 0.90 22.29 29.57 -169.99 -5.03 17.27 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 N -0.67 -12.94 4.41 -54.85 -0.24 -13.18 16 16 C 0.59 11.83 7.73 -12.48 -0.10 11.73 16 17 O -0.53 -11.39 12.71 5.28 0.07 -11.32 16 18 C -0.01 -0.22 6.96 -83.55 -0.58 -0.80 16 19 N -0.19 -3.37 12.04 32.84 0.40 -2.97 16 20 N -0.03 -0.46 13.79 60.35 0.83 0.38 16 21 N -0.33 -4.21 4.03 -63.59 -0.26 -4.46 16 22 C 0.08 0.54 10.50 59.85 0.63 1.17 16 23 C 0.00 -0.05 6.46 -81.87 -0.53 -0.58 16 24 C 0.55 7.86 3.14 36.01 0.11 7.97 16 25 F -0.18 -1.98 15.33 2.25 0.03 -1.95 16 26 F -0.12 -2.04 13.42 2.25 0.03 -2.01 16 27 F -0.16 -2.47 17.30 2.25 0.04 -2.43 16 28 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.14 8.03 -51.93 -0.42 0.73 16 32 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 33 H 0.03 0.89 6.90 -51.93 -0.36 0.53 16 34 H 0.04 1.11 7.30 -51.93 -0.38 0.74 16 35 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.40 7.56 6.86 -40.82 -0.28 7.28 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.58 7.11 -51.93 -0.37 0.21 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -32.81 348.58 -3.57 -36.38 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.67 Total: 0.47 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: -0.11 Total: 19.47 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.82 Total: -61.12 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.10 Total: -6.39 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.81 -3.57 -36.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268750333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.642 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds