Wall clock time and date at job start Tue Mar 31 2020 18:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47114 * 2 1 4 4 C 1.52997 * 109.47337 * 119.99974 * 2 1 3 5 5 N 1.46504 * 109.47379 * 175.00014 * 4 2 1 6 6 C 1.46503 * 120.00082 * 270.00164 * 5 4 2 7 7 C 1.36940 * 119.99660 * 89.99633 * 5 4 2 8 8 H 1.07997 * 120.00267 * 23.63511 * 7 5 4 9 9 C 1.38814 * 119.99454 * 203.62915 * 7 5 4 10 10 N 1.31617 * 120.00665 * 11.29814 * 9 7 5 11 11 Si 1.86805 * 119.99609 * 191.29597 * 9 7 5 12 12 H 1.48508 * 109.46772 * 90.00331 * 11 9 7 13 13 H 1.48500 * 109.47203 * 209.99999 * 11 9 7 14 14 H 1.48500 * 109.47289 * 330.00355 * 11 9 7 15 15 N 1.46501 * 109.47021 * 239.99808 * 2 1 3 16 16 C 1.34777 * 119.99844 * 84.99967 * 15 2 1 17 17 O 1.21596 * 119.99902 * 359.97438 * 16 15 2 18 18 C 1.47518 * 120.00359 * 180.02562 * 16 15 2 19 19 N 1.34403 * 125.76607 * 0.02562 * 18 16 15 20 20 N 1.28771 * 109.52336 * 179.97438 * 19 18 16 21 21 N 1.40208 * 108.36335 * 0.02562 * 20 19 18 22 22 C 1.46500 * 126.59350 * 179.97438 * 21 20 19 23 23 C 1.34815 * 106.81251 * 359.77395 * 21 20 19 24 24 C 1.50705 * 126.57779 * 180.21403 * 23 21 20 25 25 F 1.39894 * 109.46974 * 30.17006 * 24 23 21 26 26 F 1.39908 * 109.46802 * 150.16738 * 24 23 21 27 27 F 1.39899 * 109.47171 * 270.16341 * 24 23 21 28 28 H 1.09007 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47212 * 300.00012 * 1 2 3 30 30 H 1.08991 * 109.47346 * 60.00078 * 1 2 3 31 31 H 1.09000 * 109.47233 * 294.99790 * 4 2 1 32 32 H 1.08995 * 109.47285 * 55.00340 * 4 2 1 33 33 H 1.09005 * 109.47035 * 94.54567 * 6 5 4 34 34 H 1.08993 * 109.46868 * 214.55098 * 6 5 4 35 35 H 1.08995 * 109.46794 * 334.54688 * 6 5 4 36 36 H 0.96991 * 120.00331 * 179.97438 * 10 9 7 37 37 H 0.96995 * 120.00443 * 264.99915 * 15 2 1 38 38 H 1.08992 * 109.47334 * 89.97352 * 22 21 20 39 39 H 1.08998 * 109.47527 * 209.98209 * 22 21 20 40 40 H 1.09006 * 109.46802 * 329.97652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.2799 0.1650 1.7239 8 1 3.8835 0.8070 2.4966 9 6 5.5799 0.3445 1.2715 10 7 5.9918 -0.2793 0.1882 11 14 6.7447 1.4715 2.2002 12 1 7.4753 0.6888 3.2294 13 1 7.7172 2.0695 1.2505 14 1 5.9678 2.5520 2.8592 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0183 -2.3571 17 8 1.8573 1.1614 -2.4118 18 6 2.6381 -0.7138 -3.5618 19 7 2.9887 -2.0094 -3.6329 20 7 3.3704 -2.2868 -4.8310 21 7 3.2736 -1.1225 -5.6062 22 6 3.6081 -0.9884 -7.0262 23 6 2.8092 -0.1512 -4.7947 24 6 2.5342 1.2811 -5.1743 25 9 2.1619 1.3432 -6.5214 26 9 1.4975 1.7831 -4.3803 27 9 3.6879 2.0464 -4.9735 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7517 -0.1583 2.1369 32 1 1.6055 -1.7198 1.2951 33 1 4.3535 -1.7640 -0.4802 34 1 5.0470 -2.2389 1.0889 35 1 3.4426 -2.8399 0.6066 36 1 6.9001 -0.1536 -0.1281 37 1 2.2490 -1.6318 -1.1526 38 1 2.7258 -1.2028 -7.6292 39 1 3.9460 0.0286 -7.2254 40 1 4.4016 -1.6912 -7.2804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268750333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:54 Heat of formation + Delta-G solvation = -73.255831 kcal Electronic energy + Delta-G solvation = -30971.096421 eV Core-core repulsion = 26216.068992 eV Total energy + Delta-G solvation = -4755.027429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.43091 -48.99106 -48.80912 -43.67711 -40.59999 -38.04054 -36.15591 -35.73238 -33.35819 -32.95788 -31.75112 -29.10271 -27.95124 -27.65650 -27.36798 -25.18216 -23.57555 -23.05666 -22.07319 -21.41227 -19.85169 -19.83127 -19.52410 -18.80040 -18.73717 -17.58067 -17.21024 -16.80234 -16.65821 -16.03592 -15.82474 -15.64968 -15.50699 -15.31604 -15.30030 -15.06067 -15.01985 -14.88547 -14.64945 -14.49649 -14.31196 -14.05661 -13.72023 -13.39130 -13.14329 -13.05049 -12.82593 -12.69081 -12.61749 -12.51053 -12.26744 -12.02440 -11.81379 -11.77975 -11.68179 -11.13035 -10.79338 -10.61103 -9.94534 -8.69885 -7.78354 -5.25824 -0.65368 0.33282 0.40089 1.26309 1.45460 1.46087 1.54084 1.95901 2.17533 2.21942 2.52837 2.61666 2.98500 3.01305 3.20083 3.35710 3.57387 3.74419 4.05245 4.16334 4.23358 4.39636 4.45790 4.48664 4.56634 4.81979 4.85146 4.87116 4.93547 5.05065 5.22100 5.37909 5.42989 5.63956 5.68725 5.82233 6.32287 6.37075 6.60304 7.15721 7.20219 7.92374 8.34374 9.23571 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.004381 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.807940 B = 6389.122732 C = 6812.092167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.121 3.879 3 H 0.049 0.951 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.176 3.824 7 C -0.257 4.257 8 H 0.071 0.929 9 C -0.051 4.051 10 N -0.931 5.931 11 Si 0.960 3.040 12 H -0.285 1.285 13 H -0.302 1.302 14 H -0.270 1.270 15 N -0.674 5.674 16 C 0.585 3.415 17 O -0.553 6.553 18 C -0.041 4.041 19 N -0.213 5.213 20 N -0.034 5.034 21 N -0.308 5.308 22 C 0.059 3.941 23 C -0.002 4.002 24 C 0.554 3.446 25 F -0.155 7.155 26 F -0.137 7.137 27 F -0.167 7.167 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.032 0.968 36 H 0.241 0.759 37 H 0.406 0.594 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -2.385 -15.553 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.067 0.933 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.032 3.968 7 C -0.387 4.387 8 H 0.089 0.911 9 C -0.246 4.246 10 N -0.577 5.577 11 Si 0.789 3.211 12 H -0.212 1.212 13 H -0.230 1.230 14 H -0.195 1.195 15 N -0.322 5.322 16 C 0.368 3.632 17 O -0.431 6.431 18 C -0.183 4.183 19 N -0.083 5.083 20 N -0.015 5.015 21 N -0.095 5.095 22 C -0.079 4.079 23 C -0.143 4.143 24 C 0.496 3.504 25 F -0.136 7.136 26 F -0.118 7.118 27 F -0.148 7.148 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.242 0.758 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.606 -3.037 -15.668 18.628 hybrid contribution 1.158 1.442 0.116 1.853 sum -8.448 -1.595 -15.552 17.770 Atomic orbital electron populations 1.22028 0.93107 1.02900 1.02410 1.21861 0.94441 0.96794 0.85503 0.93300 1.21412 0.83121 0.99335 0.94693 1.44108 1.00995 1.20400 1.67899 1.20584 0.94148 0.86177 0.95936 1.19498 0.94969 1.10443 1.13802 0.91114 1.25713 1.00576 1.00956 0.97349 1.70228 1.16690 1.47334 1.23478 0.85374 0.79049 0.79098 0.77579 1.21205 1.22959 1.19459 1.45624 1.63966 1.14196 1.08405 1.16922 0.77985 0.85804 0.82535 1.90838 1.52414 1.15087 1.84763 1.21458 1.10307 0.91632 0.94904 1.74732 1.09263 1.12347 1.12007 1.81959 1.19805 1.03720 0.95997 1.50645 1.40270 1.05750 1.12857 1.23124 1.06518 1.07502 0.70712 1.21612 1.06781 0.92659 0.93244 1.16724 0.75764 0.82664 0.75214 1.93240 1.91433 1.96682 1.32249 1.93431 1.57705 1.87749 1.72938 1.93282 1.49808 1.76964 1.94791 0.90830 0.89881 0.93717 0.91017 0.90782 0.97251 0.97116 0.94921 0.94933 0.75814 0.85207 0.86788 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.48 71.98 0.68 -3.40 16 2 C 0.12 4.49 2.88 44.99 0.13 4.62 16 3 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 4 C 0.14 5.26 5.33 86.38 0.46 5.72 16 5 N -0.61 -29.57 2.78 -726.94 -2.02 -31.59 16 6 C 0.18 8.51 7.61 127.77 0.97 9.48 16 7 C -0.26 -14.01 9.66 84.03 0.81 -13.20 16 8 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 9 C -0.05 -2.89 5.13 84.86 0.44 -2.45 16 10 N -0.93 -55.98 10.66 21.65 0.23 -55.75 16 11 Si 0.96 46.48 29.57 68.60 2.03 48.51 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 15 N -0.67 -26.05 4.41 -445.72 -1.97 -28.01 16 16 C 0.58 23.87 7.73 86.69 0.67 24.54 16 17 O -0.55 -24.58 12.71 -4.02 -0.05 -24.64 16 18 C -0.04 -1.47 6.96 40.81 0.28 -1.19 16 19 N -0.21 -7.45 12.04 -50.00 -0.60 -8.05 16 20 N -0.03 -1.02 13.79 37.02 0.51 -0.51 16 21 N -0.31 -7.31 4.03 -355.10 -1.43 -8.74 16 22 C 0.06 0.62 10.50 127.77 1.34 1.97 16 23 C 0.00 -0.07 6.46 41.72 0.27 0.20 16 24 C 0.55 15.51 3.14 71.24 0.22 15.74 16 25 F -0.15 -3.09 15.33 44.97 0.69 -2.40 16 26 F -0.14 -4.59 13.42 44.97 0.60 -3.98 16 27 F -0.17 -5.15 17.30 44.97 0.78 -4.37 16 28 H 0.07 1.74 8.14 -2.38 -0.02 1.73 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 32 H 0.07 2.33 7.86 -2.39 -0.02 2.31 16 33 H 0.01 0.49 6.90 -2.38 -0.02 0.48 16 34 H 0.01 0.55 7.30 -2.39 -0.02 0.53 16 35 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 36 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.41 15.18 6.86 -92.71 -0.64 14.54 16 38 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 0.96 7.11 -2.39 -0.02 0.94 16 40 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -73.21 348.58 5.52 -67.69 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.47 Total: 9.81 kcal Atomic # 6 Polarization: 35.76 SS G_CDS: 6.28 Total: 42.04 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -5.28 Total: -132.66 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 2.07 Total: -10.76 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.21 5.52 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268750333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.564 kcal (2) G-P(sol) polarization free energy of solvation -73.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds