Wall clock time and date at job start Tue Mar 31 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99902 * 2 1 4 4 O 1.21582 * 120.00330 * 184.45422 * 3 2 1 5 5 C 1.47543 * 119.99976 * 4.44825 * 3 2 1 6 6 C 1.39803 * 120.98167 * 311.73822 * 5 3 2 7 7 N 1.32194 * 118.97904 * 180.26920 * 6 5 3 8 8 C 1.31930 * 121.13849 * 359.72322 * 7 6 5 9 9 N 1.31721 * 122.19949 * 0.02562 * 8 7 6 10 10 C 1.32770 * 120.87553 * 359.97438 * 9 8 7 11 11 O 1.35273 * 120.61915 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.00139 * 180.02562 * 2 1 3 13 13 C 1.53931 * 113.73634 * 38.76640 * 12 2 1 14 14 N 1.48190 * 86.10180 * 221.95956 * 13 12 2 15 15 C 1.46897 * 111.07551 * 137.52323 * 14 13 12 16 16 C 1.50698 * 109.47606 * 70.55968 * 15 14 13 17 17 O 1.21299 * 119.99942 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00278 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00113 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99910 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00014 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00316 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00140 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47008 * 59.99916 * 23 21 19 25 25 H 1.48503 * 109.47489 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47245 * 300.00208 * 23 21 19 27 27 C 1.47961 * 90.80028 * 24.59697 * 14 13 12 28 28 H 1.09001 * 109.47065 * 93.01001 * 1 2 3 29 29 H 1.09003 * 109.46525 * 213.00774 * 1 2 3 30 30 H 1.08999 * 109.47320 * 332.99764 * 1 2 3 31 31 H 1.07995 * 120.50861 * 0.02562 * 6 5 3 32 32 H 1.08002 * 118.89947 * 180.02562 * 8 7 6 33 33 H 0.96701 * 114.00600 * 90.00376 * 11 10 9 34 34 H 1.09001 * 112.93894 * 170.33164 * 12 2 1 35 35 H 1.09004 * 113.75508 * 336.23368 * 13 12 2 36 36 H 1.08995 * 113.76279 * 107.60303 * 13 12 2 37 37 H 1.08998 * 109.47326 * 190.56434 * 15 14 13 38 38 H 1.09010 * 109.46735 * 310.56203 * 15 14 13 39 39 H 0.97001 * 120.00292 * 0.02562 * 18 16 15 40 40 H 0.97003 * 120.00570 * 180.02562 * 22 21 19 41 41 H 1.09003 * 113.75578 * 221.08576 * 27 14 13 42 42 H 1.09000 * 113.85675 * 89.73472 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1689 -0.0818 5 6 1.4045 2.4430 0.0991 6 6 0.2962 2.7004 -0.7133 7 7 -0.3292 3.8590 -0.5952 8 6 0.0721 4.7653 0.2756 9 7 1.1069 4.5688 1.0666 10 6 1.7959 3.4349 1.0182 11 8 2.8575 3.2385 1.8333 12 6 2.1975 -1.2687 -0.0006 13 6 1.5559 -2.3542 -0.8834 14 7 1.8639 -3.2922 0.2218 15 6 0.7409 -4.2069 0.4668 16 6 0.6274 -5.1809 -0.6775 17 8 1.4058 -5.1194 -1.6058 18 7 -0.3390 -6.1202 -0.6696 19 6 -0.4419 -7.0066 -1.7105 20 1 0.2512 -6.9519 -2.5369 21 6 -1.4379 -7.9754 -1.7021 22 7 -2.2810 -8.0424 -0.6963 23 14 -1.5786 -9.1827 -3.1205 24 1 -0.3201 -9.9630 -3.2331 25 1 -2.7143 -10.1070 -2.8732 26 1 -1.8136 -8.4375 -4.3834 27 6 1.8625 -2.1781 1.1955 28 1 -0.3633 -0.0540 -1.0263 29 1 -0.3632 -0.8619 0.5599 30 1 -0.3634 0.9156 0.4666 31 1 -0.0413 1.9656 -1.4291 32 1 -0.4658 5.6995 0.3421 33 1 2.6326 2.8309 2.6809 34 1 3.2669 -1.1417 -0.1691 35 1 0.4887 -2.2093 -1.0516 36 1 2.1085 -2.5578 -1.8005 37 1 0.9133 -4.7539 1.3937 38 1 -0.1829 -3.6341 0.5494 39 1 -0.9618 -6.1692 0.0724 40 1 -2.9761 -8.7189 -0.6902 41 1 2.6598 -2.2412 1.9361 42 1 0.8861 -1.9802 1.6376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269805816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:53 Heat of formation + Delta-G solvation = 2.705483 kcal Electronic energy + Delta-G solvation = -28316.511984 eV Core-core repulsion = 24106.635225 eV Total energy + Delta-G solvation = -4209.876759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95676 -40.66385 -39.10448 -38.19409 -37.69522 -35.39734 -33.99471 -33.82771 -32.26243 -31.33290 -29.97047 -27.54850 -26.32796 -26.07927 -25.18729 -24.75905 -23.55704 -21.05082 -19.81323 -19.37172 -19.18866 -18.65156 -17.98127 -17.71059 -17.08977 -16.87020 -16.21146 -15.87946 -15.46022 -15.26033 -14.86092 -14.61324 -14.58380 -14.37870 -14.06659 -13.89914 -13.52367 -13.19097 -13.03039 -12.81066 -12.68508 -12.63152 -12.13585 -11.86491 -11.76595 -11.56448 -11.21088 -11.15458 -11.06901 -10.70942 -10.48060 -10.33818 -10.25557 -10.03870 -9.91808 -9.54824 -8.99200 -8.79544 -8.32495 -8.02183 -6.46911 -3.87962 -0.07040 0.33012 2.17098 2.43852 2.73323 3.09422 3.16398 3.22671 3.26963 3.49511 3.72683 3.80733 3.85844 3.99987 4.16345 4.30063 4.40781 4.57067 4.60405 4.73680 4.86883 4.89971 4.98377 5.11312 5.18164 5.29950 5.33423 5.54064 5.57216 5.62124 5.70163 5.83752 6.03088 6.14225 6.18030 6.23151 6.48547 6.80342 6.90266 7.06071 7.38143 7.50117 7.69894 7.99774 8.55256 9.12485 9.47771 9.99240 10.70647 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.002169 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.917351 B =12904.459745 C =13452.030058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.569 3.431 4 O -0.508 6.508 5 C -0.252 4.252 6 C 0.197 3.803 7 N -0.525 5.525 8 C 0.336 3.664 9 N -0.540 5.540 10 C 0.410 3.590 11 O -0.459 6.459 12 C 0.113 3.887 13 C 0.014 3.986 14 N -0.447 5.447 15 C 0.014 3.986 16 C 0.442 3.558 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.013 4.013 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.181 0.819 32 H 0.208 0.792 33 H 0.411 0.589 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.095 0.905 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 22.311 7.381 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.331 5.331 3 C 0.355 3.645 4 O -0.382 6.382 5 C -0.261 4.261 6 C 0.030 3.970 7 N -0.240 5.240 8 C 0.049 3.951 9 N -0.264 5.264 10 C 0.222 3.778 11 O -0.267 6.267 12 C 0.010 3.990 13 C -0.116 4.116 14 N -0.170 5.170 15 C -0.118 4.118 16 C 0.227 3.773 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.143 4.143 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.197 0.803 32 H 0.224 0.776 33 H 0.272 0.728 34 H 0.150 0.850 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.417 22.804 6.363 23.717 hybrid contribution -1.271 -1.273 0.324 1.828 sum 0.145 21.530 6.688 22.546 Atomic orbital electron populations 1.22055 0.79466 1.03474 1.02787 1.47840 1.06952 1.05596 1.72761 1.17687 0.86962 0.82614 0.77273 1.90864 1.12984 1.86639 1.47756 1.21951 1.00860 0.98217 1.05103 1.23666 0.86992 0.93330 0.92986 1.68490 1.32218 1.02548 1.20742 1.25102 0.87978 0.97815 0.84179 1.68128 1.08401 1.22293 1.27624 1.19389 0.83469 0.86332 0.88625 1.84726 1.26776 1.83317 1.31856 1.23355 0.99004 0.79982 0.96645 1.24303 1.00272 0.89284 0.97724 1.68411 1.37348 1.08397 1.02863 1.22445 0.92876 0.96516 0.99994 1.19646 0.84387 0.84660 0.88624 1.90536 1.43970 1.74236 1.37437 1.41859 1.28099 1.28143 1.21876 1.19648 1.14187 1.08589 1.00514 0.87956 1.25259 0.95761 0.98525 0.98322 1.69596 1.18067 1.35741 1.30919 0.85918 0.77848 0.79732 0.80740 1.19836 1.20953 1.19894 1.24508 1.01917 0.91179 0.96703 0.91312 0.90262 0.91015 0.80250 0.77604 0.72762 0.84996 0.90967 0.87910 0.88934 0.92930 0.77515 0.91779 0.88640 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 7.65 59.85 0.46 0.90 16 2 N -0.60 -5.77 3.09 -176.51 -0.55 -6.31 16 3 C 0.57 6.35 7.04 -12.47 -0.09 6.27 16 4 O -0.51 -7.69 16.09 -0.72 -0.01 -7.70 16 5 C -0.25 -2.32 4.95 -104.56 -0.52 -2.84 16 6 C 0.20 1.48 8.90 -16.81 -0.15 1.33 16 7 N -0.53 -4.08 10.42 -14.29 -0.15 -4.23 16 8 C 0.34 2.34 12.27 -92.10 -1.13 1.21 16 9 N -0.54 -4.83 10.45 -14.32 -0.15 -4.98 16 10 C 0.41 3.90 7.83 -16.19 -0.13 3.78 16 11 O -0.46 -4.20 12.75 -23.52 -0.30 -4.50 16 12 C 0.11 1.33 4.41 -69.63 -0.31 1.02 16 13 C 0.01 0.19 6.25 -2.63 -0.02 0.18 16 14 N -0.45 -6.94 5.95 -239.68 -1.42 -8.36 16 15 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 16 C 0.44 10.04 7.59 -10.99 -0.08 9.95 16 17 O -0.58 -15.23 15.13 5.54 0.08 -15.15 16 18 N -0.56 -13.82 5.29 -10.96 -0.06 -13.87 16 19 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 23 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C -0.01 -0.15 7.51 -2.76 -0.02 -0.17 16 28 H 0.07 0.40 7.54 -51.93 -0.39 0.01 16 29 H 0.08 0.53 6.48 -51.93 -0.34 0.19 16 30 H 0.07 0.38 5.65 -51.93 -0.29 0.09 16 31 H 0.18 0.99 6.58 -52.49 -0.35 0.64 16 32 H 0.21 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.41 1.63 9.06 45.56 0.41 2.04 16 34 H 0.13 1.76 7.20 -51.93 -0.37 1.39 16 35 H 0.07 0.96 6.52 -51.93 -0.34 0.62 16 36 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 37 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.74 7.70 -51.92 -0.40 0.34 16 39 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.67 6.46 -51.93 -0.34 0.34 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -36.03 356.96 -7.65 -43.68 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.92 Total: 9.61 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -2.25 Total: 14.03 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -1.60 Total: -61.00 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.23 Total: -27.35 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.03 -7.65 -43.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269805816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.382 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds