Wall clock time and date at job start Tue Mar 31 2020 18:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99902 * 2 1 4 4 O 1.21582 * 120.00330 * 184.45422 * 3 2 1 5 5 C 1.47543 * 119.99976 * 4.44825 * 3 2 1 6 6 C 1.39803 * 120.98167 * 311.73822 * 5 3 2 7 7 N 1.32194 * 118.97904 * 180.26920 * 6 5 3 8 8 C 1.31930 * 121.13849 * 359.72322 * 7 6 5 9 9 N 1.31721 * 122.19949 * 0.02562 * 8 7 6 10 10 C 1.32770 * 120.87553 * 359.97438 * 9 8 7 11 11 O 1.35273 * 120.61915 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.00139 * 180.02562 * 2 1 3 13 13 C 1.53931 * 113.73634 * 38.76640 * 12 2 1 14 14 N 1.48190 * 86.10180 * 221.95956 * 13 12 2 15 15 C 1.46897 * 111.07551 * 137.52323 * 14 13 12 16 16 C 1.50698 * 109.47606 * 70.55968 * 15 14 13 17 17 O 1.21299 * 119.99942 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00278 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00113 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99910 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00014 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00316 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00140 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47008 * 59.99916 * 23 21 19 25 25 H 1.48503 * 109.47489 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47245 * 300.00208 * 23 21 19 27 27 C 1.47961 * 90.80028 * 24.59697 * 14 13 12 28 28 H 1.09001 * 109.47065 * 93.01001 * 1 2 3 29 29 H 1.09003 * 109.46525 * 213.00774 * 1 2 3 30 30 H 1.08999 * 109.47320 * 332.99764 * 1 2 3 31 31 H 1.07995 * 120.50861 * 0.02562 * 6 5 3 32 32 H 1.08002 * 118.89947 * 180.02562 * 8 7 6 33 33 H 0.96701 * 114.00600 * 90.00376 * 11 10 9 34 34 H 1.09001 * 112.93894 * 170.33164 * 12 2 1 35 35 H 1.09004 * 113.75508 * 336.23368 * 13 12 2 36 36 H 1.08995 * 113.76279 * 107.60303 * 13 12 2 37 37 H 1.08998 * 109.47326 * 190.56434 * 15 14 13 38 38 H 1.09010 * 109.46735 * 310.56203 * 15 14 13 39 39 H 0.97001 * 120.00292 * 0.02562 * 18 16 15 40 40 H 0.97003 * 120.00570 * 180.02562 * 22 21 19 41 41 H 1.09003 * 113.75578 * 221.08576 * 27 14 13 42 42 H 1.09000 * 113.85675 * 89.73472 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1689 -0.0818 5 6 1.4045 2.4430 0.0991 6 6 0.2962 2.7004 -0.7133 7 7 -0.3292 3.8590 -0.5952 8 6 0.0721 4.7653 0.2756 9 7 1.1069 4.5688 1.0666 10 6 1.7959 3.4349 1.0182 11 8 2.8575 3.2385 1.8333 12 6 2.1975 -1.2687 -0.0006 13 6 1.5559 -2.3542 -0.8834 14 7 1.8639 -3.2922 0.2218 15 6 0.7409 -4.2069 0.4668 16 6 0.6274 -5.1809 -0.6775 17 8 1.4058 -5.1194 -1.6058 18 7 -0.3390 -6.1202 -0.6696 19 6 -0.4419 -7.0066 -1.7105 20 1 0.2512 -6.9519 -2.5369 21 6 -1.4379 -7.9754 -1.7021 22 7 -2.2810 -8.0424 -0.6963 23 14 -1.5786 -9.1827 -3.1205 24 1 -0.3201 -9.9630 -3.2331 25 1 -2.7143 -10.1070 -2.8732 26 1 -1.8136 -8.4375 -4.3834 27 6 1.8625 -2.1781 1.1955 28 1 -0.3633 -0.0540 -1.0263 29 1 -0.3632 -0.8619 0.5599 30 1 -0.3634 0.9156 0.4666 31 1 -0.0413 1.9656 -1.4291 32 1 -0.4658 5.6995 0.3421 33 1 2.6326 2.8309 2.6809 34 1 3.2669 -1.1417 -0.1691 35 1 0.4887 -2.2093 -1.0516 36 1 2.1085 -2.5578 -1.8005 37 1 0.9133 -4.7539 1.3937 38 1 -0.1829 -3.6341 0.5494 39 1 -0.9618 -6.1692 0.0724 40 1 -2.9761 -8.7189 -0.6902 41 1 2.6598 -2.2412 1.9361 42 1 0.8861 -1.9802 1.6376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269805816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:52 Heat of formation + Delta-G solvation = -30.143817 kcal Electronic energy + Delta-G solvation = -28317.936437 eV Core-core repulsion = 24106.635225 eV Total energy + Delta-G solvation = -4211.301211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.62437 -41.64732 -40.25332 -39.33958 -38.78362 -36.32513 -35.87842 -34.50196 -33.31837 -32.94267 -31.18918 -28.26160 -27.55124 -27.09805 -26.43313 -25.43785 -24.79137 -22.03119 -20.97344 -20.46855 -20.13327 -19.88707 -19.29474 -18.52468 -17.92597 -17.78510 -17.63968 -16.86728 -16.54970 -16.39370 -16.03904 -15.94160 -15.62860 -15.37099 -15.15025 -14.97711 -14.80875 -14.23435 -14.01618 -13.64834 -13.59338 -13.50816 -13.45743 -13.27940 -13.18220 -12.86744 -12.44932 -12.43382 -12.19528 -12.13612 -11.82885 -11.78593 -11.49341 -11.13999 -10.72764 -10.54143 -10.33688 -10.01336 -9.82454 -9.75853 -8.46505 -5.94816 -0.68227 -0.26743 1.35889 1.39490 1.42118 1.52217 1.63951 2.05561 2.16510 2.29062 2.48772 2.80628 2.99911 3.15797 3.20159 3.22115 3.25812 3.48060 3.70813 3.72749 4.02442 4.09432 4.13667 4.24816 4.33732 4.36319 4.41413 4.47501 4.55358 4.67927 4.80331 4.81105 4.97026 5.04176 5.27346 5.33456 5.41603 5.59711 5.85106 6.04760 6.13737 6.35122 6.60693 6.81031 6.87248 7.13406 7.56667 8.12754 8.70483 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.002169 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.917351 B =12904.459745 C =13452.030058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.590 5.590 3 C 0.574 3.426 4 O -0.557 6.557 5 C -0.264 4.264 6 C 0.207 3.793 7 N -0.533 5.533 8 C 0.341 3.659 9 N -0.556 5.556 10 C 0.405 3.595 11 O -0.477 6.477 12 C 0.126 3.874 13 C 0.013 3.987 14 N -0.480 5.480 15 C 0.027 3.973 16 C 0.439 3.561 17 O -0.620 6.620 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.989 3.011 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.003 3.997 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.200 0.800 32 H 0.242 0.758 33 H 0.429 0.571 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.105 0.895 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 23.367 8.318 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.322 5.322 3 C 0.361 3.639 4 O -0.435 6.435 5 C -0.273 4.273 6 C 0.040 3.960 7 N -0.248 5.248 8 C 0.056 3.944 9 N -0.281 5.281 10 C 0.217 3.783 11 O -0.288 6.288 12 C 0.022 3.978 13 C -0.117 4.117 14 N -0.203 5.203 15 C -0.104 4.104 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.813 3.187 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.126 4.126 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.216 0.784 32 H 0.258 0.742 33 H 0.294 0.706 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.554 23.866 7.346 24.977 hybrid contribution -0.661 -1.523 0.043 1.661 sum -1.215 22.343 7.389 23.564 Atomic orbital electron populations 1.22326 0.77231 1.04844 1.04027 1.47804 1.08152 1.04403 1.71817 1.17924 0.86395 0.83406 0.76199 1.90840 1.15144 1.87334 1.50186 1.21757 1.01825 0.97363 1.06399 1.23967 0.85997 0.93648 0.92357 1.68605 1.32363 1.02700 1.21107 1.25849 0.87154 0.98588 0.82836 1.68220 1.09223 1.22070 1.28624 1.19552 0.83377 0.86610 0.88726 1.84673 1.27371 1.83650 1.33097 1.22949 0.97936 0.80619 0.96317 1.24234 1.00667 0.90159 0.96603 1.68377 1.37321 1.09933 1.04689 1.22342 0.94957 0.95769 0.97376 1.20765 0.82619 0.84463 0.89482 1.90512 1.45187 1.75255 1.39637 1.41919 1.28984 1.28539 1.21586 1.19582 1.14838 1.10563 1.01226 0.90521 1.25974 0.95030 0.99496 1.00572 1.69648 1.18194 1.36235 1.31888 0.85043 0.77985 0.77724 0.77930 1.19986 1.19468 1.19667 1.24524 1.03771 0.88410 0.95861 0.90108 0.89399 0.89205 0.78351 0.74221 0.70647 0.87146 0.89721 0.91282 0.87143 0.89592 0.76912 0.91287 0.87707 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 7.65 127.77 0.98 1.58 16 2 N -0.59 -10.50 3.09 -830.61 -2.57 -13.07 16 3 C 0.57 12.45 7.04 86.70 0.61 13.06 16 4 O -0.56 -17.24 16.09 1.77 0.03 -17.21 16 5 C -0.26 -4.53 4.95 -19.82 -0.10 -4.62 16 6 C 0.21 2.67 8.90 85.02 0.76 3.43 16 7 N -0.53 -6.93 10.42 -199.13 -2.07 -9.01 16 8 C 0.34 3.92 12.27 180.87 2.22 6.14 16 9 N -0.56 -9.03 10.45 -312.05 -3.26 -12.29 16 10 C 0.41 7.30 7.83 85.17 0.67 7.97 16 11 O -0.48 -8.55 12.75 -79.83 -1.02 -9.57 16 12 C 0.13 2.87 4.41 46.56 0.21 3.08 16 13 C 0.01 0.36 6.25 86.36 0.54 0.90 16 14 N -0.48 -14.35 5.95 -912.21 -5.42 -19.77 16 15 C 0.03 0.85 5.31 85.56 0.45 1.30 16 16 C 0.44 20.01 7.59 87.66 0.67 20.67 16 17 O -0.62 -33.57 15.13 -3.09 -0.05 -33.62 16 18 N -0.57 -28.27 5.29 -306.99 -1.62 -29.89 16 19 C -0.33 -18.45 9.68 84.04 0.81 -17.64 16 20 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -48.21 13.05 21.66 0.28 -47.93 16 23 Si 0.99 42.16 29.55 68.60 2.03 44.18 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 C 0.00 0.07 7.51 86.41 0.65 0.72 16 28 H 0.08 0.70 7.54 -2.39 -0.02 0.68 16 29 H 0.09 0.82 6.48 -2.39 -0.02 0.81 16 30 H 0.09 0.66 5.65 -2.39 -0.01 0.65 16 31 H 0.20 1.65 6.58 -2.91 -0.02 1.63 16 32 H 0.24 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.43 3.17 9.06 -74.06 -0.67 2.50 16 34 H 0.11 3.05 7.20 -2.39 -0.02 3.03 16 35 H 0.08 2.12 6.52 -2.38 -0.02 2.11 16 36 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 37 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.09 2.12 7.70 -2.38 -0.02 2.10 16 39 H 0.40 18.39 7.90 -92.71 -0.73 17.66 16 40 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.10 1.47 6.46 -2.39 -0.02 1.45 16 Total: -1.00 -80.21 356.96 -5.04 -85.24 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.29 Total: 26.43 kcal Atomic # 6 Polarization: 27.58 SS G_CDS: 8.93 Total: 36.50 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -14.67 Total: -131.97 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -1.04 Total: -60.39 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -80.21 -5.04 -85.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269805816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.099 kcal (2) G-P(sol) polarization free energy of solvation -80.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds