Wall clock time and date at job start Tue Mar 31 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36940 * 120.00068 * 2 1 4 4 H 1.08001 * 119.99927 * 203.04372 * 3 2 1 5 5 C 1.38807 * 119.99866 * 23.04981 * 3 2 1 6 6 N 1.31612 * 120.00137 * 12.93097 * 5 3 2 7 7 Si 1.86803 * 119.99622 * 192.93653 * 5 3 2 8 8 H 1.48494 * 109.47279 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.46976 * 120.00092 * 7 5 3 10 10 H 1.48503 * 109.46786 * 239.99473 * 7 5 3 11 11 C 1.46501 * 119.99915 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47261 * 90.00034 * 11 2 1 13 13 N 1.46501 * 109.47261 * 180.02562 * 12 11 2 14 14 C 1.46493 * 119.99915 * 269.99966 * 13 12 11 15 15 C 1.34782 * 119.99949 * 90.00284 * 13 12 11 16 16 O 1.21282 * 119.99727 * 359.97438 * 15 13 12 17 17 C 1.50695 * 119.99839 * 180.02562 * 15 13 12 18 18 C 1.50706 * 109.47135 * 179.97438 * 17 15 13 19 19 N 1.29738 * 126.29041 * 269.95602 * 18 17 15 20 20 O 1.41346 * 109.73931 * 180.02562 * 19 18 17 21 21 C 1.34898 * 109.32621 * 0.02562 * 20 19 18 22 22 C 1.38965 * 133.33117 * 179.97438 * 21 20 19 23 23 C 1.37758 * 119.96767 * 180.02562 * 22 21 20 24 24 C 1.38996 * 120.58411 * 0.02562 * 23 22 21 25 25 F 1.35099 * 119.84030 * 180.02562 * 24 23 22 26 26 C 1.37796 * 120.31742 * 359.97438 * 24 23 22 27 27 C 1.39725 * 119.65619 * 0.02562 * 26 24 23 28 28 H 1.09007 * 109.47151 * 275.12215 * 1 2 3 29 29 H 1.09003 * 109.47459 * 35.11675 * 1 2 3 30 30 H 1.08995 * 109.47725 * 155.12058 * 1 2 3 31 31 H 0.97002 * 120.00204 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47355 * 329.99805 * 11 2 1 33 33 H 1.08998 * 109.47232 * 210.00065 * 11 2 1 34 34 H 1.08997 * 109.47566 * 59.99592 * 12 11 2 35 35 H 1.09005 * 109.47250 * 299.99799 * 12 11 2 36 36 H 1.09003 * 109.47360 * 269.99841 * 14 13 12 37 37 H 1.08993 * 109.47451 * 30.00237 * 14 13 12 38 38 H 1.09005 * 109.47365 * 150.00380 * 14 13 12 39 39 H 1.08994 * 109.47620 * 59.99351 * 17 15 13 40 40 H 1.09006 * 109.46835 * 299.98908 * 17 15 13 41 41 H 1.07993 * 120.01321 * 359.74827 * 22 21 20 42 42 H 1.08000 * 119.70928 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.16997 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5387 2.3400 0.4707 6 7 0.4119 2.2597 1.1460 7 14 2.3159 4.0073 0.1454 8 1 3.5698 3.8263 -0.6291 9 1 1.3715 4.8507 -0.6306 10 1 2.6242 4.6703 1.4380 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 7 3.1844 -2.9788 -1.4438 14 6 4.6493 -2.9795 -1.4436 15 6 2.5099 -4.1458 -1.4445 16 8 1.2971 -4.1452 -1.4443 17 6 3.2629 -5.4512 -1.4445 18 6 2.2831 -6.5962 -1.4448 19 7 1.7843 -7.1803 -0.3992 20 8 0.9037 -8.2099 -0.8021 21 6 0.8614 -8.2594 -2.1496 22 6 0.1756 -9.0619 -3.0533 23 6 0.3406 -8.8696 -4.4074 24 6 1.1900 -7.8772 -4.8824 25 9 1.3402 -7.7013 -6.2135 26 6 1.8788 -7.0711 -4.0023 27 6 1.7201 -7.2560 -2.6264 28 1 -0.3634 0.0918 1.0236 29 1 -0.3634 0.8406 -0.5912 30 1 -0.3634 -0.9322 -0.4323 31 1 -0.0152 3.0662 1.4746 32 1 1.6084 -2.0287 0.5130 33 1 3.1498 -1.1387 0.5133 34 1 3.0414 -0.9500 -1.9568 35 1 1.5000 -1.8399 -1.9571 36 1 5.0128 -2.9791 -2.4712 37 1 5.0130 -2.0900 -0.9292 38 1 5.0123 -3.8699 -0.9302 39 1 3.8891 -5.5095 -0.5543 40 1 3.8899 -5.5089 -2.3343 41 1 -0.4829 -9.8389 -2.6942 42 1 -0.1941 -9.4959 -5.1060 43 1 2.5378 -6.3005 -4.3740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272131231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:24 Heat of formation + Delta-G solvation = 18.941616 kcal Electronic energy + Delta-G solvation = -28131.954971 eV Core-core repulsion = 23902.862302 eV Total energy + Delta-G solvation = -4229.092669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.26775 -42.14857 -39.83947 -37.84302 -36.25130 -34.97265 -34.85335 -31.70314 -31.16688 -30.28851 -29.88293 -28.24530 -26.51427 -25.76456 -24.11975 -23.59934 -23.10193 -21.31111 -20.43679 -19.08596 -18.60701 -17.70641 -17.29937 -16.97321 -16.66338 -16.28460 -16.04976 -15.79961 -15.68744 -15.23980 -14.74797 -14.65246 -13.99038 -13.82160 -13.74077 -13.48250 -13.42639 -13.16156 -13.05384 -12.67505 -12.41662 -12.34925 -12.25946 -12.06548 -11.88045 -11.53129 -11.41361 -11.29562 -10.87438 -10.85669 -10.51816 -10.19749 -9.95487 -9.82506 -9.78044 -9.47177 -8.84841 -8.76302 -8.44324 -6.72737 -5.71528 -3.20033 0.10385 0.64223 1.58436 2.11020 2.57096 2.89955 3.10325 3.36693 3.43060 3.45383 3.50106 3.67502 3.92718 4.05165 4.36177 4.42524 4.50162 4.62520 4.77413 4.79609 4.90508 5.04412 5.21189 5.30754 5.35937 5.43384 5.47147 5.52423 5.58423 5.60163 5.69368 5.71067 6.11178 6.14916 6.25809 6.47181 6.60284 6.85672 6.87598 6.92927 7.41504 7.43501 7.75649 7.81644 8.15746 8.39957 9.23353 9.86864 10.36970 11.32797 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002322 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.046149 B =12058.119363 C =12233.383974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.258 4.258 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.143 3.857 12 C 0.093 3.907 13 N -0.606 5.606 14 C 0.073 3.927 15 C 0.513 3.487 16 O -0.526 6.526 17 C -0.077 4.077 18 C 0.157 3.843 19 N -0.264 5.264 20 O -0.085 6.085 21 C 0.077 3.923 22 C -0.094 4.094 23 C -0.095 4.095 24 C 0.071 3.929 25 F -0.133 7.133 26 C -0.072 4.072 27 C -0.157 4.157 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.001 0.999 31 H 0.252 0.748 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 -23.537 -11.700 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.323 5.323 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.549 5.549 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.014 3.986 12 C -0.032 4.032 13 N -0.340 5.340 14 C -0.071 4.071 15 C 0.298 3.702 16 O -0.402 6.402 17 C -0.117 4.117 18 C -0.025 4.025 19 N -0.005 5.005 20 O -0.095 6.095 21 C 0.023 3.977 22 C -0.114 4.114 23 C -0.115 4.115 24 C 0.051 3.949 25 F -0.112 7.112 26 C -0.093 4.093 27 C -0.160 4.160 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.171 0.829 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.534 -23.491 -10.289 26.465 hybrid contribution 0.501 1.181 -1.108 1.695 sum 7.035 -22.310 -11.397 26.021 Atomic orbital electron populations 1.20810 0.82363 0.95595 0.99541 1.43851 1.01998 1.00390 1.86015 1.19200 0.98248 0.85567 1.35760 0.91413 1.25054 0.97881 0.98588 0.98147 1.70093 1.19362 1.27099 1.38377 0.86188 0.78502 0.84346 0.77480 1.20340 1.21596 1.21734 1.20969 0.96255 0.88793 0.92583 1.22603 0.96762 0.81652 1.02134 1.47937 1.07007 1.06479 1.72585 1.21881 0.79685 1.03665 1.01827 1.19957 0.87973 0.84581 0.77688 1.90788 1.13519 1.86964 1.48913 1.20361 0.95927 0.88311 1.07146 1.23750 0.94586 0.94704 0.89491 1.79932 1.03653 0.99188 1.17758 1.89208 1.56353 1.47116 1.16863 1.20265 0.96128 0.95972 0.85357 1.19838 1.01159 1.00477 0.89906 1.21086 0.97658 0.97331 0.95418 1.17265 1.00938 0.98923 0.77761 1.91537 1.94678 1.94875 1.30103 1.20558 0.99392 0.98893 0.90415 1.20333 1.02478 0.99088 0.94118 0.95062 0.94093 0.98030 0.93754 0.94357 0.93600 0.90492 0.90454 0.92425 0.90108 0.91325 0.85759 0.85848 0.83153 0.82931 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 8.98 59.84 0.54 4.76 16 2 N -0.60 -15.47 2.92 -181.13 -0.53 -16.00 16 3 C -0.26 -7.06 9.65 -15.06 -0.15 -7.21 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.05 5.10 -17.44 -0.09 -0.04 16 6 N -0.90 -26.84 10.71 55.49 0.59 -26.25 16 7 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.14 3.02 5.97 -4.04 -0.02 3.00 16 12 C 0.09 1.63 5.73 -4.04 -0.02 1.61 16 13 N -0.61 -8.17 2.87 -181.58 -0.52 -8.69 16 14 C 0.07 0.63 10.24 59.84 0.61 1.24 16 15 C 0.51 7.28 7.67 -10.99 -0.08 7.19 16 16 O -0.53 -10.07 15.61 5.56 0.09 -9.98 16 17 C -0.08 -0.73 4.85 -29.03 -0.14 -0.87 16 18 C 0.16 1.92 5.96 -80.11 -0.48 1.45 16 19 N -0.26 -3.80 12.81 34.91 0.45 -3.36 16 20 O -0.08 -1.17 12.07 7.47 0.09 -1.08 16 21 C 0.08 0.88 7.48 -38.50 -0.29 0.59 16 22 C -0.09 -0.76 10.06 -39.49 -0.40 -1.15 16 23 C -0.09 -0.68 9.99 -39.48 -0.39 -1.07 16 24 C 0.07 0.63 7.29 -39.46 -0.29 0.34 16 25 F -0.13 -1.24 17.26 2.25 0.04 -1.20 16 26 C -0.07 -0.68 10.08 -39.19 -0.39 -1.07 16 27 C -0.16 -1.79 6.32 -105.16 -0.66 -2.45 16 28 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 29 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 30 H 0.00 0.03 8.03 -51.93 -0.42 -0.39 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 35 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.07 0.40 6.44 -51.93 -0.33 0.06 16 39 H 0.12 0.91 7.40 -51.93 -0.38 0.52 16 40 H 0.12 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -35.61 373.34 -7.07 -42.69 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -5.62 Total: -4.76 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.26 Total: 6.31 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.01 Total: -54.29 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.18 Total: -11.06 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.61 -7.07 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272131231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.627 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds