Wall clock time and date at job start Tue Mar 31 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36940 * 120.00068 * 2 1 4 4 H 1.08001 * 119.99927 * 203.04372 * 3 2 1 5 5 C 1.38807 * 119.99866 * 23.04981 * 3 2 1 6 6 N 1.31612 * 120.00137 * 12.93097 * 5 3 2 7 7 Si 1.86803 * 119.99622 * 192.93653 * 5 3 2 8 8 H 1.48494 * 109.47279 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.46976 * 120.00092 * 7 5 3 10 10 H 1.48503 * 109.46786 * 239.99473 * 7 5 3 11 11 C 1.46501 * 119.99915 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47261 * 90.00034 * 11 2 1 13 13 N 1.46501 * 109.47261 * 180.02562 * 12 11 2 14 14 C 1.46493 * 119.99915 * 269.99966 * 13 12 11 15 15 C 1.34782 * 119.99949 * 90.00284 * 13 12 11 16 16 O 1.21282 * 119.99727 * 359.97438 * 15 13 12 17 17 C 1.50695 * 119.99839 * 180.02562 * 15 13 12 18 18 C 1.50706 * 109.47135 * 179.97438 * 17 15 13 19 19 N 1.29738 * 126.29041 * 269.95602 * 18 17 15 20 20 O 1.41346 * 109.73931 * 180.02562 * 19 18 17 21 21 C 1.34898 * 109.32621 * 0.02562 * 20 19 18 22 22 C 1.38965 * 133.33117 * 179.97438 * 21 20 19 23 23 C 1.37758 * 119.96767 * 180.02562 * 22 21 20 24 24 C 1.38996 * 120.58411 * 0.02562 * 23 22 21 25 25 F 1.35099 * 119.84030 * 180.02562 * 24 23 22 26 26 C 1.37796 * 120.31742 * 359.97438 * 24 23 22 27 27 C 1.39725 * 119.65619 * 0.02562 * 26 24 23 28 28 H 1.09007 * 109.47151 * 275.12215 * 1 2 3 29 29 H 1.09003 * 109.47459 * 35.11675 * 1 2 3 30 30 H 1.08995 * 109.47725 * 155.12058 * 1 2 3 31 31 H 0.97002 * 120.00204 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47355 * 329.99805 * 11 2 1 33 33 H 1.08998 * 109.47232 * 210.00065 * 11 2 1 34 34 H 1.08997 * 109.47566 * 59.99592 * 12 11 2 35 35 H 1.09005 * 109.47250 * 299.99799 * 12 11 2 36 36 H 1.09003 * 109.47360 * 269.99841 * 14 13 12 37 37 H 1.08993 * 109.47451 * 30.00237 * 14 13 12 38 38 H 1.09005 * 109.47365 * 150.00380 * 14 13 12 39 39 H 1.08994 * 109.47620 * 59.99351 * 17 15 13 40 40 H 1.09006 * 109.46835 * 299.98908 * 17 15 13 41 41 H 1.07993 * 120.01321 * 359.74827 * 22 21 20 42 42 H 1.08000 * 119.70928 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.16997 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5387 2.3400 0.4707 6 7 0.4119 2.2597 1.1460 7 14 2.3159 4.0073 0.1454 8 1 3.5698 3.8263 -0.6291 9 1 1.3715 4.8507 -0.6306 10 1 2.6242 4.6703 1.4380 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 7 3.1844 -2.9788 -1.4438 14 6 4.6493 -2.9795 -1.4436 15 6 2.5099 -4.1458 -1.4445 16 8 1.2971 -4.1452 -1.4443 17 6 3.2629 -5.4512 -1.4445 18 6 2.2831 -6.5962 -1.4448 19 7 1.7843 -7.1803 -0.3992 20 8 0.9037 -8.2099 -0.8021 21 6 0.8614 -8.2594 -2.1496 22 6 0.1756 -9.0619 -3.0533 23 6 0.3406 -8.8696 -4.4074 24 6 1.1900 -7.8772 -4.8824 25 9 1.3402 -7.7013 -6.2135 26 6 1.8788 -7.0711 -4.0023 27 6 1.7201 -7.2560 -2.6264 28 1 -0.3634 0.0918 1.0236 29 1 -0.3634 0.8406 -0.5912 30 1 -0.3634 -0.9322 -0.4323 31 1 -0.0152 3.0662 1.4746 32 1 1.6084 -2.0287 0.5130 33 1 3.1498 -1.1387 0.5133 34 1 3.0414 -0.9500 -1.9568 35 1 1.5000 -1.8399 -1.9571 36 1 5.0128 -2.9791 -2.4712 37 1 5.0130 -2.0900 -0.9292 38 1 5.0123 -3.8699 -0.9302 39 1 3.8891 -5.5095 -0.5543 40 1 3.8899 -5.5089 -2.3343 41 1 -0.4829 -9.8389 -2.6942 42 1 -0.1941 -9.4959 -5.1060 43 1 2.5378 -6.3005 -4.3740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272131231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:23 Heat of formation + Delta-G solvation = -3.754473 kcal Electronic energy + Delta-G solvation = -28132.939147 eV Core-core repulsion = 23902.862302 eV Total energy + Delta-G solvation = -4230.076845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.96550 -42.97311 -40.97370 -38.56404 -37.90176 -36.45758 -35.76566 -33.54400 -31.94690 -31.38859 -30.74185 -29.55981 -28.01770 -27.40256 -25.35268 -24.70615 -23.85203 -22.74641 -21.83541 -20.12561 -19.35672 -18.80354 -18.50214 -18.21149 -17.69203 -17.35401 -17.12337 -16.76764 -16.61674 -16.47626 -16.02996 -15.56627 -15.35669 -15.29599 -14.78344 -14.57954 -14.44173 -14.28427 -14.04075 -13.93284 -13.86802 -13.41286 -13.13324 -13.04112 -12.98511 -12.81988 -12.74800 -12.64067 -12.50068 -12.35873 -12.19170 -12.12841 -11.90783 -11.64290 -10.99849 -10.70862 -10.20400 -9.80669 -9.58906 -8.78764 -7.83594 -5.35908 -0.62576 -0.08191 0.75794 1.28602 1.47188 1.48774 1.51339 1.59671 1.98730 2.28791 2.51854 2.72785 2.93360 3.20594 3.30445 3.38731 3.45827 3.73465 3.86725 3.87975 4.10948 4.14578 4.17899 4.24684 4.37847 4.42884 4.52621 4.64807 4.73726 4.75160 4.82233 4.82428 4.87641 4.90298 4.94457 5.03232 5.09894 5.25950 5.49069 5.52049 5.58262 5.63955 6.01814 6.29395 6.37399 7.07433 7.11078 7.80351 8.28540 9.20586 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002322 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.046149 B =12058.119363 C =12233.383974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.262 4.262 4 H 0.083 0.917 5 C -0.059 4.059 6 N -0.944 5.944 7 Si 0.976 3.024 8 H -0.258 1.258 9 H -0.294 1.294 10 H -0.294 1.294 11 C 0.147 3.853 12 C 0.113 3.887 13 N -0.604 5.604 14 C 0.063 3.937 15 C 0.509 3.491 16 O -0.586 6.586 17 C -0.067 4.067 18 C 0.157 3.843 19 N -0.305 5.305 20 O -0.108 6.108 21 C 0.051 3.949 22 C -0.092 4.092 23 C -0.080 4.080 24 C 0.064 3.936 25 F -0.135 7.135 26 C -0.076 4.076 27 C -0.176 4.176 28 H 0.003 0.997 29 H 0.020 0.980 30 H 0.015 0.985 31 H 0.248 0.752 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.152 0.848 40 H 0.172 0.828 41 H 0.178 0.822 42 H 0.188 0.812 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.002 -24.606 -13.851 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.341 5.341 3 C -0.392 4.392 4 H 0.101 0.899 5 C -0.254 4.254 6 N -0.591 5.591 7 Si 0.804 3.196 8 H -0.181 1.181 9 H -0.221 1.221 10 H -0.221 1.221 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.337 5.337 14 C -0.078 4.078 15 C 0.297 3.703 16 O -0.466 6.466 17 C -0.107 4.107 18 C -0.025 4.025 19 N -0.049 5.049 20 O -0.118 6.118 21 C -0.002 4.002 22 C -0.111 4.111 23 C -0.100 4.100 24 C 0.045 3.955 25 F -0.114 7.114 26 C -0.096 4.096 27 C -0.179 4.179 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.169 0.831 40 H 0.189 0.811 41 H 0.195 0.805 42 H 0.205 0.795 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.203 -24.608 -12.468 29.081 hybrid contribution -0.306 1.405 -0.505 1.524 sum 8.897 -23.203 -12.973 28.033 Atomic orbital electron populations 1.20480 0.83298 0.95296 0.97478 1.44093 1.01878 1.01806 1.86356 1.19633 0.98758 0.86120 1.34664 0.89932 1.25953 0.98637 1.02445 0.98366 1.70276 1.21120 1.27679 1.39986 0.85075 0.78159 0.79344 0.77068 1.18136 1.22091 1.22066 1.21052 0.95594 0.86445 0.94929 1.21947 0.96498 0.84032 0.98782 1.47945 1.09017 1.04752 1.71944 1.22268 0.76105 1.05233 1.04198 1.20724 0.87499 0.86008 0.76110 1.90770 1.16380 1.87895 1.51543 1.20535 0.95187 0.84237 1.10725 1.24226 0.94154 0.94689 0.89423 1.79849 1.05130 1.00503 1.19381 1.89130 1.56825 1.47467 1.18392 1.20823 0.97345 0.97244 0.84828 1.20250 1.00770 1.00390 0.89731 1.21485 0.96443 0.96575 0.95485 1.17470 1.01172 0.99276 0.77606 1.91537 1.94715 1.94928 1.30193 1.20752 0.99792 0.99428 0.89670 1.20481 1.03203 0.99526 0.94738 0.97861 0.96113 0.96627 0.94299 0.96187 0.92648 0.89531 0.93216 0.89603 0.90576 0.87860 0.83053 0.81099 0.80489 0.79464 0.81806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.77 8.98 127.77 1.15 10.91 16 2 N -0.62 -32.32 2.92 -726.96 -2.12 -34.44 16 3 C -0.26 -14.27 9.65 84.03 0.81 -13.46 16 4 H 0.08 4.17 7.86 -2.91 -0.02 4.15 16 5 C -0.06 -3.35 5.10 84.86 0.43 -2.92 16 6 N -0.94 -57.50 10.71 21.65 0.23 -57.27 16 7 Si 0.98 44.68 29.57 68.60 2.03 46.70 16 8 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 9 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 C 0.15 6.24 5.97 86.38 0.52 6.75 16 12 C 0.11 3.90 5.73 86.38 0.49 4.40 16 13 N -0.60 -15.04 2.87 -846.78 -2.43 -17.48 16 14 C 0.06 0.83 10.24 127.77 1.31 2.14 16 15 C 0.51 13.80 7.67 87.65 0.67 14.47 16 16 O -0.59 -22.90 15.61 -3.04 -0.05 -22.94 16 17 C -0.07 -1.09 4.85 29.10 0.14 -0.95 16 18 C 0.16 3.74 5.96 45.05 0.27 4.01 16 19 N -0.31 -9.01 12.81 -43.47 -0.56 -9.57 16 20 O -0.11 -3.09 12.07 29.10 0.35 -2.74 16 21 C 0.05 1.16 7.48 22.97 0.17 1.34 16 22 C -0.09 -1.33 10.06 22.33 0.22 -1.11 16 23 C -0.08 -0.94 9.99 22.34 0.22 -0.72 16 24 C 0.06 1.00 7.29 22.35 0.16 1.16 16 25 F -0.14 -2.20 17.26 44.97 0.78 -1.43 16 26 C -0.08 -1.30 10.08 22.52 0.23 -1.08 16 27 C -0.18 -3.88 6.32 -20.22 -0.13 -4.01 16 28 H 0.00 0.18 7.34 -2.38 -0.02 0.17 16 29 H 0.02 1.16 7.34 -2.39 -0.02 1.15 16 30 H 0.02 0.77 8.03 -2.39 -0.02 0.75 16 31 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.02 0.90 8.07 -2.39 -0.02 0.89 16 33 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 34 H 0.09 2.83 8.07 -2.39 -0.02 2.81 16 35 H 0.05 2.01 7.42 -2.38 -0.02 1.99 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 38 H 0.10 0.67 6.44 -2.38 -0.02 0.66 16 39 H 0.15 1.66 7.40 -2.39 -0.02 1.64 16 40 H 0.17 1.09 8.11 -2.38 -0.02 1.08 16 41 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -82.51 373.34 5.94 -76.57 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: 1.04 Total: 1.64 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 6.67 Total: 20.94 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -4.88 Total: -118.76 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.30 Total: -25.68 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -82.51 5.94 -76.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272131231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.820 kcal (2) G-P(sol) polarization free energy of solvation -82.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds