Wall clock time and date at job start Tue Mar 31 2020 18:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39593 * 120.10634 * 274.61057 * 3 2 1 5 5 C 1.37999 * 119.99856 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.21719 * 359.73855 * 5 4 3 7 7 C 1.38947 * 120.21370 * 0.51613 * 6 5 4 8 8 N 1.39949 * 120.00338 * 179.76536 * 7 6 5 9 9 C 1.34775 * 119.99975 * 214.86268 * 8 7 6 10 10 O 1.21286 * 120.00495 * 355.52599 * 9 8 7 11 11 C 1.50709 * 119.99730 * 175.51902 * 9 8 7 12 12 N 1.46500 * 109.47086 * 180.02562 * 11 9 8 13 13 C 1.46505 * 119.99882 * 270.00580 * 12 11 9 14 14 C 1.38815 * 120.00246 * 89.99966 * 12 11 9 15 15 C 1.39804 * 119.58322 * 9.44441 * 14 12 11 16 16 C 1.38589 * 119.49149 * 179.78672 * 15 14 12 17 17 C 1.38394 * 118.68058 * 0.47864 * 16 15 14 18 18 C 1.40549 * 119.14869 * 359.74487 * 17 16 15 19 19 C 1.41319 * 119.78397 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00170 * 5.16301 * 19 18 17 21 21 C 1.40023 * 119.99963 * 185.16367 * 19 18 17 22 22 N 1.30753 * 120.00109 * 5.12848 * 21 19 18 23 23 Si 1.86797 * 120.00244 * 185.13651 * 21 19 18 24 24 H 1.48498 * 109.47652 * 94.99293 * 23 21 19 25 25 H 1.48497 * 109.47536 * 214.99925 * 23 21 19 26 26 H 1.48509 * 109.46804 * 334.99390 * 23 21 19 27 27 N 1.31947 * 119.58960 * 189.71531 * 14 12 11 28 28 C 1.38648 * 120.00054 * 359.48979 * 7 6 5 29 29 H 4.52050 * 14.03127 * 0.02562 * 4 2 1 30 30 H 1.08007 * 120.00118 * 359.95661 * 4 3 2 31 31 H 1.08000 * 119.89176 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.89927 * 180.25985 * 6 5 4 33 33 H 0.96999 * 119.99446 * 34.85870 * 8 7 6 34 34 H 1.09001 * 109.47321 * 300.00128 * 11 9 8 35 35 H 1.08997 * 109.46645 * 60.00382 * 11 9 8 36 36 H 1.08995 * 109.47229 * 85.04278 * 13 12 11 37 37 H 1.09000 * 109.46981 * 205.04663 * 13 12 11 38 38 H 1.09003 * 109.46816 * 325.04077 * 13 12 11 39 39 H 1.08000 * 120.25361 * 359.97438 * 15 14 12 40 40 H 1.07996 * 120.65992 * 180.22660 * 16 15 14 41 41 H 1.07997 * 120.42384 * 179.77214 * 17 16 15 42 42 H 0.97001 * 119.99728 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.11045 * 180.23217 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3062 -0.0961 1.2037 5 6 4.6862 -0.0958 1.2011 6 6 5.3796 -0.0054 0.0086 7 6 4.6917 0.0967 -1.1943 8 7 5.3981 0.1929 -2.3985 9 6 4.9144 0.9474 -3.4051 10 8 3.8286 1.4772 -3.2983 11 6 5.7228 1.1328 -4.6635 12 7 4.9848 1.9880 -5.5964 13 6 4.0652 1.3900 -6.5675 14 6 5.1568 3.3650 -5.5601 15 6 6.1747 3.9129 -4.7739 16 6 6.3476 5.2876 -4.7426 17 6 5.4941 6.0815 -5.4886 18 6 4.4867 5.4712 -6.2555 19 6 3.6074 6.2691 -7.0219 20 1 3.7616 7.3362 -7.0837 21 6 2.5361 5.6761 -7.7011 22 7 2.2892 4.4014 -7.5466 23 14 1.4598 6.7059 -8.8282 24 1 1.9496 6.5871 -10.2250 25 1 0.0580 6.2218 -8.7524 26 1 1.5160 8.1277 -8.4031 27 7 4.3542 4.1406 -6.2638 28 6 3.3052 0.0973 -1.2021 29 1 -1.0501 -0.0005 0.0001 30 1 2.7679 -0.1709 2.1371 31 1 5.2262 -0.1703 2.1334 32 1 6.4596 -0.0098 0.0122 33 1 6.2360 -0.2833 -2.5086 34 1 6.6756 1.6015 -4.4175 35 1 5.9037 0.1622 -5.1253 36 1 3.0919 1.2387 -6.1008 37 1 3.9580 2.0556 -7.4240 38 1 4.4617 0.4307 -6.9003 39 1 6.8233 3.2697 -4.1978 40 1 7.1301 5.7308 -4.1446 41 1 5.6010 7.1562 -5.4819 42 1 1.5473 3.9906 -8.0174 43 1 2.7687 0.1727 -2.1363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320737352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:49 Heat of formation + Delta-G solvation = 107.791532 kcal Electronic energy + Delta-G solvation = -27413.815665 eV Core-core repulsion = 23619.345043 eV Total energy + Delta-G solvation = -3794.470623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50958 -38.83930 -38.03856 -35.50918 -34.87849 -33.45968 -33.31079 -30.77909 -30.38212 -29.94136 -29.27410 -27.87835 -25.80544 -24.20366 -23.62229 -22.80330 -21.20553 -20.74393 -19.74178 -19.19938 -17.50976 -17.13383 -16.78007 -16.31342 -16.24643 -15.31308 -14.91944 -14.84881 -14.58469 -14.37991 -14.21021 -13.95308 -13.60569 -13.31484 -13.19222 -12.91078 -12.63945 -12.15248 -12.02211 -11.83606 -11.76967 -11.53279 -11.31361 -11.18036 -11.10054 -10.91932 -10.62239 -10.57153 -10.39784 -10.22944 -9.92153 -9.78592 -9.35035 -8.71590 -8.65136 -8.18944 -7.89575 -7.45695 -6.47226 -6.32498 -4.43519 0.82196 1.26168 2.65740 2.67701 2.83755 2.96068 3.07143 3.13903 3.17301 3.27837 3.34578 3.91734 3.94436 4.01331 4.18223 4.77168 4.82838 4.94029 4.97369 5.06252 5.23483 5.37780 5.42980 5.45300 5.63328 5.86602 5.99103 6.07811 6.16397 6.20350 6.23416 6.37072 6.44681 6.47692 6.56285 6.71359 6.79593 6.91113 6.92178 7.08788 7.24195 7.35498 7.47237 7.58342 7.81433 7.92294 7.99429 8.27476 8.37886 8.51492 8.82241 9.11083 10.25374 10.42137 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003054 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.089267 B = 9165.773685 C =10144.442655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.024 3.976 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.140 4.140 7 C 0.156 3.844 8 N -0.683 5.683 9 C 0.482 3.518 10 O -0.489 6.489 11 C 0.123 3.877 12 N -0.602 5.602 13 C 0.117 3.883 14 C 0.417 3.583 15 C -0.366 4.366 16 C -0.031 4.031 17 C -0.314 4.314 18 C 0.292 3.708 19 C -0.434 4.434 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.713 5.713 23 Si 0.905 3.095 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.262 1.262 27 N -0.521 5.521 28 C -0.098 4.098 29 H 0.224 0.776 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.409 0.591 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.037 0.963 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.270 0.730 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -13.519 11.161 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.024 3.976 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.161 4.161 7 C 0.061 3.939 8 N -0.331 5.331 9 C 0.267 3.733 10 O -0.359 6.359 11 C -0.007 4.007 12 N -0.319 5.319 13 C -0.027 4.027 14 C 0.178 3.822 15 C -0.392 4.392 16 C -0.055 4.055 17 C -0.337 4.337 18 C 0.166 3.834 19 C -0.465 4.465 20 H 0.101 0.899 21 C -0.153 4.153 22 N -0.334 5.334 23 Si 0.729 3.271 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.186 1.186 27 N -0.241 5.241 28 C -0.118 4.118 29 H 0.241 0.759 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.245 0.755 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.838 -13.685 10.520 17.493 hybrid contribution 0.377 0.585 0.220 0.730 sum 3.215 -13.099 10.740 17.242 Atomic orbital electron populations 1.24866 0.95761 0.99377 0.99398 1.19999 0.92031 1.01322 1.01207 1.15818 0.86702 1.01686 0.93421 1.21123 0.94181 1.01466 0.96853 1.20811 0.93653 0.99936 0.97594 1.21018 1.00031 1.04018 0.91015 1.17640 0.91015 0.99405 0.85843 1.43775 1.26255 1.50077 1.12963 1.22454 0.88064 0.77324 0.85409 1.90767 1.20566 1.45092 1.79519 1.21080 0.95392 0.96755 0.87505 1.45476 1.47846 1.02644 1.35904 1.21362 0.91800 0.96297 0.93208 1.18336 0.89132 0.83746 0.90937 1.20546 1.07667 0.95178 1.15808 1.20557 0.96211 0.93085 0.95664 1.21541 1.04538 0.98265 1.09369 1.18212 0.89334 0.87380 0.88518 1.19572 1.07826 0.94848 1.24289 0.89903 1.26029 0.97681 0.95044 0.96504 1.70126 1.22304 1.10726 1.30255 0.86371 0.79143 0.81032 0.80557 1.19576 1.20265 1.18628 1.68163 1.25407 1.04729 1.25846 1.21384 0.92746 0.99055 0.98587 0.75890 0.85719 0.85231 0.85381 0.75529 0.87460 0.88418 0.94464 0.89059 0.94645 0.89473 0.88936 0.88688 0.91889 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 19.25 29.55 0.57 -1.55 16 2 C -0.15 -2.08 13.24 -38.84 -0.51 -2.59 16 3 C 0.02 0.35 5.72 -107.03 -0.61 -0.26 16 4 C -0.12 -1.34 9.75 -39.16 -0.38 -1.72 16 5 C -0.10 -0.99 10.02 -39.67 -0.40 -1.39 16 6 C -0.14 -1.46 9.96 -39.32 -0.39 -1.85 16 7 C 0.16 2.05 6.29 -83.74 -0.53 1.53 16 8 N -0.68 -8.12 5.34 -9.89 -0.05 -8.18 16 9 C 0.48 7.78 7.74 -10.98 -0.09 7.70 16 10 O -0.49 -10.60 13.87 5.55 0.08 -10.52 16 11 C 0.12 1.82 5.86 -5.19 -0.03 1.79 16 12 N -0.60 -12.36 2.47 -183.07 -0.45 -12.82 16 13 C 0.12 2.30 10.48 59.85 0.63 2.92 16 14 C 0.42 10.38 7.34 -155.33 -1.14 9.24 16 15 C -0.37 -8.54 9.32 -38.87 -0.36 -8.90 16 16 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 17 C -0.31 -8.14 9.83 -38.65 -0.38 -8.52 16 18 C 0.29 8.29 6.53 -85.00 -0.56 7.74 16 19 C -0.43 -11.94 9.13 -37.74 -0.34 -12.28 16 20 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 21 C 0.07 1.89 5.48 -17.34 -0.10 1.79 16 22 N -0.71 -19.13 11.51 55.55 0.64 -18.49 16 23 Si 0.90 19.06 29.56 -169.99 -5.03 14.03 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 27 N -0.52 -14.63 6.69 -10.33 -0.07 -14.70 16 28 C -0.10 -1.51 8.40 -39.00 -0.33 -1.84 16 29 H 0.22 1.72 7.80 -54.09 -0.42 1.30 16 30 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.41 3.05 8.82 -40.82 -0.36 2.69 16 34 H 0.11 1.44 5.84 -51.93 -0.30 1.14 16 35 H 0.10 1.04 7.94 -51.93 -0.41 0.63 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 2.06 7.37 -51.93 -0.38 1.67 16 38 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 39 H 0.09 1.74 5.96 -52.49 -0.31 1.43 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.27 6.60 8.29 -40.82 -0.34 6.27 16 43 H 0.14 2.58 6.23 -52.49 -0.33 2.25 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -35.70 377.75 -9.56 -45.25 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.02 Total: 9.05 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -5.35 Total: -9.33 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.07 Total: -54.19 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.70 -9.56 -45.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320737352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.044 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds