Wall clock time and date at job start Tue Mar 31 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39593 * 120.10634 * 274.61057 * 3 2 1 5 5 C 1.37999 * 119.99856 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.21719 * 359.73855 * 5 4 3 7 7 C 1.38947 * 120.21370 * 0.51613 * 6 5 4 8 8 N 1.39949 * 120.00338 * 179.76536 * 7 6 5 9 9 C 1.34775 * 119.99975 * 214.86268 * 8 7 6 10 10 O 1.21286 * 120.00495 * 355.52599 * 9 8 7 11 11 C 1.50709 * 119.99730 * 175.51902 * 9 8 7 12 12 N 1.46500 * 109.47086 * 180.02562 * 11 9 8 13 13 C 1.46505 * 119.99882 * 270.00580 * 12 11 9 14 14 C 1.38815 * 120.00246 * 89.99966 * 12 11 9 15 15 C 1.39804 * 119.58322 * 9.44441 * 14 12 11 16 16 C 1.38589 * 119.49149 * 179.78672 * 15 14 12 17 17 C 1.38394 * 118.68058 * 0.47864 * 16 15 14 18 18 C 1.40549 * 119.14869 * 359.74487 * 17 16 15 19 19 C 1.41319 * 119.78397 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00170 * 5.16301 * 19 18 17 21 21 C 1.40023 * 119.99963 * 185.16367 * 19 18 17 22 22 N 1.30753 * 120.00109 * 5.12848 * 21 19 18 23 23 Si 1.86797 * 120.00244 * 185.13651 * 21 19 18 24 24 H 1.48498 * 109.47652 * 94.99293 * 23 21 19 25 25 H 1.48497 * 109.47536 * 214.99925 * 23 21 19 26 26 H 1.48509 * 109.46804 * 334.99390 * 23 21 19 27 27 N 1.31947 * 119.58960 * 189.71531 * 14 12 11 28 28 C 1.38648 * 120.00054 * 359.48979 * 7 6 5 29 29 H 4.52050 * 14.03127 * 0.02562 * 4 2 1 30 30 H 1.08007 * 120.00118 * 359.95661 * 4 3 2 31 31 H 1.08000 * 119.89176 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.89927 * 180.25985 * 6 5 4 33 33 H 0.96999 * 119.99446 * 34.85870 * 8 7 6 34 34 H 1.09001 * 109.47321 * 300.00128 * 11 9 8 35 35 H 1.08997 * 109.46645 * 60.00382 * 11 9 8 36 36 H 1.08995 * 109.47229 * 85.04278 * 13 12 11 37 37 H 1.09000 * 109.46981 * 205.04663 * 13 12 11 38 38 H 1.09003 * 109.46816 * 325.04077 * 13 12 11 39 39 H 1.08000 * 120.25361 * 359.97438 * 15 14 12 40 40 H 1.07996 * 120.65992 * 180.22660 * 16 15 14 41 41 H 1.07997 * 120.42384 * 179.77214 * 17 16 15 42 42 H 0.97001 * 119.99728 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.11045 * 180.23217 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3062 -0.0961 1.2037 5 6 4.6862 -0.0958 1.2011 6 6 5.3796 -0.0054 0.0086 7 6 4.6917 0.0967 -1.1943 8 7 5.3981 0.1929 -2.3985 9 6 4.9144 0.9474 -3.4051 10 8 3.8286 1.4772 -3.2983 11 6 5.7228 1.1328 -4.6635 12 7 4.9848 1.9880 -5.5964 13 6 4.0652 1.3900 -6.5675 14 6 5.1568 3.3650 -5.5601 15 6 6.1747 3.9129 -4.7739 16 6 6.3476 5.2876 -4.7426 17 6 5.4941 6.0815 -5.4886 18 6 4.4867 5.4712 -6.2555 19 6 3.6074 6.2691 -7.0219 20 1 3.7616 7.3362 -7.0837 21 6 2.5361 5.6761 -7.7011 22 7 2.2892 4.4014 -7.5466 23 14 1.4598 6.7059 -8.8282 24 1 1.9496 6.5871 -10.2250 25 1 0.0580 6.2218 -8.7524 26 1 1.5160 8.1277 -8.4031 27 7 4.3542 4.1406 -6.2638 28 6 3.3052 0.0973 -1.2021 29 1 -1.0501 -0.0005 0.0001 30 1 2.7679 -0.1709 2.1371 31 1 5.2262 -0.1703 2.1334 32 1 6.4596 -0.0098 0.0122 33 1 6.2360 -0.2833 -2.5086 34 1 6.6756 1.6015 -4.4175 35 1 5.9037 0.1622 -5.1253 36 1 3.0919 1.2387 -6.1008 37 1 3.9580 2.0556 -7.4240 38 1 4.4617 0.4307 -6.9003 39 1 6.8233 3.2697 -4.1978 40 1 7.1301 5.7308 -4.1446 41 1 5.6010 7.1562 -5.4819 42 1 1.5473 3.9906 -8.0174 43 1 2.7687 0.1727 -2.1363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320737352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:48 Heat of formation + Delta-G solvation = 86.278386 kcal Electronic energy + Delta-G solvation = -27414.748545 eV Core-core repulsion = 23619.345043 eV Total energy + Delta-G solvation = -3795.403503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64649 -40.28835 -39.49427 -37.06538 -36.08657 -35.22014 -34.42927 -32.46791 -31.59438 -31.26672 -30.83688 -29.23163 -27.61792 -25.89524 -24.57095 -23.91370 -23.08704 -22.13317 -21.19054 -20.23076 -19.33088 -18.32817 -17.99179 -17.71794 -17.27369 -16.72550 -16.49088 -16.27519 -16.11703 -15.79384 -15.48578 -15.28736 -14.97233 -14.74722 -14.42242 -14.24054 -14.21373 -13.84802 -13.63341 -13.00244 -12.93016 -12.85861 -12.77822 -12.65917 -12.61659 -12.50538 -12.33110 -12.12588 -11.75811 -11.64915 -11.36780 -11.23099 -11.01065 -10.42906 -9.83360 -9.66573 -9.39999 -9.15483 -8.27169 -8.21845 -6.46794 -0.10381 0.29668 1.03171 1.32004 1.39152 1.52499 1.53481 1.55974 1.66956 1.92396 2.06866 2.23814 2.46561 2.91770 2.97707 3.29918 3.76975 3.98251 4.04295 4.09604 4.15424 4.20772 4.27805 4.35770 4.48997 4.55801 4.57429 4.69606 4.74807 4.87605 4.90942 4.99088 5.07305 5.12551 5.27196 5.29412 5.30915 5.32458 5.46383 5.49766 5.70882 5.94465 5.98187 6.06342 6.13231 6.37482 6.49230 6.58461 6.63142 6.88113 7.16308 7.20506 8.33238 8.50699 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003054 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.089267 B = 9165.773685 C =10144.442655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.201 4.201 3 C -0.002 4.002 4 C -0.118 4.118 5 C -0.092 4.092 6 C -0.127 4.127 7 C 0.136 3.864 8 N -0.658 5.658 9 C 0.482 3.518 10 O -0.556 6.556 11 C 0.119 3.881 12 N -0.606 5.606 13 C 0.125 3.875 14 C 0.396 3.604 15 C -0.363 4.363 16 C -0.031 4.031 17 C -0.345 4.345 18 C 0.257 3.743 19 C -0.473 4.473 20 H 0.085 0.915 21 C 0.027 3.973 22 N -0.748 5.748 23 Si 0.985 3.015 24 H -0.261 1.261 25 H -0.271 1.271 26 H -0.257 1.257 27 N -0.555 5.555 28 C -0.130 4.130 29 H 0.261 0.739 30 H 0.144 0.856 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.433 0.567 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.009 0.991 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.275 0.725 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 -14.975 12.973 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.201 4.201 3 C -0.003 4.003 4 C -0.137 4.137 5 C -0.110 4.110 6 C -0.147 4.147 7 C 0.042 3.958 8 N -0.307 5.307 9 C 0.269 3.731 10 O -0.432 6.432 11 C -0.009 4.009 12 N -0.321 5.321 13 C -0.018 4.018 14 C 0.157 3.843 15 C -0.389 4.389 16 C -0.055 4.055 17 C -0.368 4.368 18 C 0.130 3.870 19 C -0.504 4.504 20 H 0.103 0.897 21 C -0.195 4.195 22 N -0.370 5.370 23 Si 0.806 3.194 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.181 1.181 27 N -0.277 5.277 28 C -0.150 4.150 29 H 0.277 0.723 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.185 0.815 33 H 0.273 0.727 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.142 -15.219 12.377 20.279 hybrid contribution -0.251 0.876 -0.160 0.925 sum 4.891 -14.343 12.217 19.465 Atomic orbital electron populations 1.25826 0.96667 0.97585 0.97510 1.20681 0.93189 1.03131 1.03091 1.16120 0.87141 1.02813 0.94195 1.21458 0.95320 1.00475 0.96406 1.21336 0.92979 0.97549 0.99108 1.21434 1.01852 1.01747 0.89708 1.17842 0.90346 1.00439 0.87203 1.43442 1.26610 1.48896 1.11791 1.22641 0.87181 0.76894 0.86357 1.90777 1.23433 1.48182 1.80776 1.21533 0.94755 0.98377 0.86242 1.45707 1.47858 1.01680 1.36852 1.21228 0.91217 0.97638 0.91753 1.18883 0.89208 0.85559 0.90648 1.20983 1.07253 0.95718 1.14905 1.21006 0.96249 0.93312 0.94918 1.21703 1.05441 0.98964 1.10723 1.18707 0.90535 0.88216 0.89540 1.19903 1.09308 0.95166 1.26063 0.89721 1.26940 0.98617 0.96271 0.97669 1.70246 1.23053 1.12467 1.31267 0.85161 0.76948 0.79075 0.78235 1.18602 1.19588 1.18088 1.68135 1.27015 1.05042 1.27462 1.21221 0.94224 1.01984 0.97602 0.72310 0.83808 0.81067 0.81516 0.72661 0.85228 0.83306 0.97280 0.92539 0.89499 0.85611 0.85112 0.88135 0.91496 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 19.25 74.32 1.43 -2.44 16 2 C -0.20 -6.03 13.24 30.02 0.40 -5.63 16 3 C 0.00 -0.06 5.72 -21.43 -0.12 -0.18 16 4 C -0.12 -2.53 9.75 22.54 0.22 -2.31 16 5 C -0.09 -1.46 10.02 22.21 0.22 -1.24 16 6 C -0.13 -2.20 9.96 22.44 0.22 -1.98 16 7 C 0.14 3.45 6.29 38.11 0.24 3.69 16 8 N -0.66 -14.35 5.34 -303.59 -1.62 -15.97 16 9 C 0.48 15.21 7.74 87.66 0.68 15.89 16 10 O -0.56 -25.25 13.87 -3.05 -0.04 -25.29 16 11 C 0.12 3.20 5.86 85.64 0.50 3.70 16 12 N -0.61 -24.71 2.47 -733.09 -1.81 -26.52 16 13 C 0.13 5.04 10.48 127.77 1.34 6.38 16 14 C 0.40 20.03 7.34 133.43 0.98 21.00 16 15 C -0.36 -16.48 9.32 22.73 0.21 -16.27 16 16 C -0.03 -1.42 10.15 22.39 0.23 -1.20 16 17 C -0.35 -18.39 9.83 22.87 0.22 -18.17 16 18 C 0.26 15.30 6.53 40.18 0.26 15.56 16 19 C -0.47 -27.39 9.13 23.46 0.21 -27.18 16 20 H 0.08 4.63 7.85 -2.91 -0.02 4.60 16 21 C 0.03 1.46 5.48 85.29 0.47 1.92 16 22 N -0.75 -42.40 11.51 21.84 0.25 -42.15 16 23 Si 0.99 40.54 29.56 68.60 2.03 42.57 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 N -0.56 -32.60 6.69 -186.59 -1.25 -33.84 16 28 C -0.13 -4.25 8.40 22.65 0.19 -4.06 16 29 H 0.26 3.70 7.80 -4.41 -0.03 3.66 16 30 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 32 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.43 4.81 8.82 -92.71 -0.82 3.99 16 34 H 0.13 2.93 5.84 -2.39 -0.01 2.92 16 35 H 0.15 2.50 7.94 -2.39 -0.02 2.48 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.06 2.67 7.37 -2.39 -0.02 2.65 16 38 H 0.09 2.54 7.96 -2.39 -0.02 2.52 16 39 H 0.13 4.59 5.96 -2.91 -0.02 4.57 16 40 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 41 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.27 14.17 8.29 -92.71 -0.77 13.40 16 43 H 0.10 4.14 6.23 -2.91 -0.02 4.12 16 Total: -1.00 -88.11 377.75 5.70 -82.41 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.24 Total: 31.32 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 7.91 Total: -12.52 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -4.43 Total: -118.49 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.04 Total: -25.29 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -88.11 5.70 -82.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320737352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.690 kcal (2) G-P(sol) polarization free energy of solvation -88.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds