Wall clock time and date at job start Tue Mar 31 2020 18:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21280 * 119.99744 * 2 1 4 4 N 1.34776 * 120.00120 * 180.02562 * 2 1 3 5 5 C 1.39290 * 119.99944 * 184.58786 * 4 2 1 6 6 C 1.38723 * 120.15356 * 34.71479 * 5 4 2 7 7 C 1.38321 * 120.04351 * 180.02562 * 6 5 4 8 8 F 1.35100 * 119.81986 * 179.97438 * 7 6 5 9 9 C 1.38856 * 120.35186 * 359.97438 * 7 6 5 10 10 C 1.37684 * 120.30414 * 359.73767 * 9 7 6 11 11 C 1.39762 * 119.94481 * 0.53863 * 10 9 7 12 12 C 1.47409 * 120.17026 * 179.74590 * 11 10 9 13 13 O 1.21611 * 119.99501 * 174.92311 * 12 11 10 14 14 N 1.34774 * 120.00228 * 354.64047 * 12 11 10 15 15 C 1.46498 * 119.99825 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46783 * 180.02562 * 15 14 12 17 17 C 1.31004 * 119.99652 * 125.84147 * 16 15 14 18 18 C 1.50697 * 120.00021 * 8.24081 * 17 16 15 19 19 N 1.46501 * 109.47321 * 126.49368 * 18 17 16 20 20 C 1.36936 * 120.00240 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99930 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00211 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99854 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00025 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47234 * 89.99632 * 24 22 20 26 26 H 1.48499 * 109.47327 * 209.99954 * 24 22 20 27 27 H 1.48505 * 109.46912 * 330.00091 * 24 22 20 28 28 H 1.08993 * 109.46874 * 239.99809 * 1 2 3 29 29 H 1.09001 * 109.46789 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46780 * 119.99208 * 1 2 3 31 31 H 0.97003 * 119.99504 * 4.57736 * 4 2 1 32 32 H 1.07996 * 119.97712 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.84814 * 180.02562 * 9 7 6 34 34 H 1.08000 * 120.03252 * 180.26114 * 10 9 7 35 35 H 0.96999 * 119.99498 * 0.02562 * 14 12 11 36 36 H 1.08995 * 109.47347 * 300.00498 * 15 14 12 37 37 H 1.08996 * 109.46840 * 60.00421 * 15 14 12 38 38 H 1.07997 * 120.00441 * 305.84672 * 16 15 14 39 39 H 1.08001 * 119.99698 * 188.22907 * 17 16 15 40 40 H 1.09000 * 109.47188 * 246.48992 * 18 17 16 41 41 H 1.09000 * 109.46889 * 6.48979 * 18 17 16 42 42 H 0.97004 * 120.00247 * 359.97438 * 19 18 17 43 43 H 0.96992 * 119.99605 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5705 -1.1691 0.0960 6 6 4.2169 -0.2125 0.8650 7 6 5.5970 -0.2162 0.9588 8 9 6.2219 0.7178 1.7086 9 6 6.3434 -1.1748 0.2864 10 6 5.7163 -2.1345 -0.4761 11 6 4.3229 -2.1390 -0.5844 12 6 3.6468 -3.1608 -1.4039 13 8 2.4322 -3.2193 -1.4225 14 7 4.3745 -4.0265 -2.1371 15 6 3.7024 -5.0416 -2.9520 16 6 4.7341 -5.8754 -3.6671 17 6 4.7190 -7.1799 -3.5480 18 6 3.5677 -7.8598 -2.8528 19 7 3.0095 -8.8929 -3.7288 20 6 1.9478 -9.6479 -3.3070 21 1 1.5216 -9.4814 -2.3286 22 6 1.4185 -10.6264 -4.1372 23 7 0.3977 -11.3517 -3.7319 24 14 2.1541 -10.9128 -5.8301 25 1 3.2337 -11.9281 -5.7355 26 1 1.0973 -11.3986 -6.7534 27 1 2.7163 -9.6394 -6.3475 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8901 31 1 1.6982 -2.0059 -0.0679 32 1 3.6424 0.5361 1.3902 33 1 7.4204 -1.1704 0.3657 34 1 6.3009 -2.8806 -0.9938 35 1 5.3431 -3.9773 -2.1251 36 1 3.0994 -5.6828 -2.3092 37 1 3.0592 -4.5527 -3.6836 38 1 5.4860 -5.3976 -4.2776 39 1 5.5315 -7.7682 -3.9483 40 1 3.9208 -8.3186 -1.9292 41 1 2.7973 -7.1242 -2.6217 42 1 3.3920 -9.0422 -4.6076 43 1 0.0276 -12.0351 -4.3122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321083887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:51 Heat of formation + Delta-G solvation = -69.585427 kcal Electronic energy + Delta-G solvation = -27393.909491 eV Core-core repulsion = 23160.978002 eV Total energy + Delta-G solvation = -4232.931490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.08645 -42.06923 -40.64554 -39.10808 -38.02776 -36.43353 -35.73744 -34.46327 -32.95564 -32.08960 -31.80239 -29.78824 -28.28047 -26.59087 -24.79820 -24.11413 -24.01014 -22.08258 -21.50523 -20.60035 -19.65896 -19.24102 -18.44542 -18.17274 -17.71580 -17.23000 -16.95265 -16.81382 -16.59807 -16.42848 -16.27946 -16.06797 -15.56391 -15.40875 -14.96085 -14.85528 -14.56561 -14.39629 -14.27710 -14.13838 -14.06514 -13.70910 -13.46611 -13.34019 -13.11125 -13.04204 -12.73757 -12.64466 -12.19416 -11.86416 -11.67640 -11.63089 -11.28264 -11.05410 -11.00309 -10.41090 -10.09063 -9.93091 -9.41120 -9.24821 -8.03558 -5.38185 -0.51895 0.00552 1.02027 1.38868 1.39676 1.43320 1.50987 1.63710 1.96705 2.21249 2.48867 2.57732 3.04867 3.27786 3.51451 3.60438 3.73010 3.79383 3.87163 3.91126 4.05385 4.13861 4.23080 4.34077 4.44103 4.55613 4.60644 4.68564 4.78080 4.88027 4.93067 4.96246 4.99760 5.02382 5.07320 5.22023 5.31780 5.58713 5.68176 5.72264 5.87743 6.20170 6.25954 6.45751 6.90736 7.06888 7.12603 7.81604 8.02066 9.17851 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.002169 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.587281 B =12904.937584 C =14137.166857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.506 3.494 3 O -0.568 6.568 4 N -0.661 5.661 5 C 0.220 3.780 6 C -0.188 4.188 7 C 0.139 3.861 8 F -0.136 7.136 9 C -0.166 4.166 10 C -0.020 4.020 11 C -0.189 4.189 12 C 0.562 3.438 13 O -0.575 6.575 14 N -0.697 5.697 15 C 0.137 3.863 16 C -0.156 4.156 17 C -0.137 4.137 18 C 0.161 3.839 19 N -0.754 5.754 20 C -0.240 4.240 21 H 0.053 0.947 22 C -0.066 4.066 23 N -0.984 5.984 24 Si 0.961 3.039 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.248 1.248 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.431 0.569 32 H 0.136 0.864 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.368 0.632 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.422 24.686 6.584 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.297 3.703 3 O -0.447 6.447 4 N -0.312 5.312 5 C 0.122 3.878 6 C -0.209 4.209 7 C 0.119 3.881 8 F -0.115 7.115 9 C -0.185 4.185 10 C -0.038 4.038 11 C -0.195 4.195 12 C 0.351 3.649 13 O -0.457 6.457 14 N -0.349 5.349 15 C 0.015 3.985 16 C -0.175 4.175 17 C -0.156 4.156 18 C 0.036 3.964 19 N -0.400 5.400 20 C -0.371 4.371 21 H 0.072 0.928 22 C -0.258 4.258 23 N -0.634 5.634 24 Si 0.788 3.212 25 H -0.201 1.201 26 H -0.223 1.223 27 H -0.172 1.172 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.276 0.724 32 H 0.154 0.846 33 H 0.195 0.805 34 H 0.199 0.801 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.202 0.798 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.735 25.321 6.739 29.585 hybrid contribution -0.066 -0.703 -0.574 0.909 sum 13.669 24.619 6.166 28.826 Atomic orbital electron populations 1.21974 0.87150 1.06820 1.06622 1.21894 0.92800 0.82218 0.73375 1.90714 1.71789 1.32515 1.49713 1.44105 1.04603 1.11853 1.70623 1.17539 0.84130 0.93961 0.92188 1.20964 0.93888 1.02696 1.03394 1.17884 0.89885 0.88154 0.92174 1.91523 1.82425 1.63602 1.73943 1.21372 1.02652 0.94898 0.99621 1.21395 0.91083 0.96912 0.94458 1.19806 0.95060 1.00345 1.04258 1.18179 0.86531 0.80881 0.79353 1.90600 1.15086 1.73352 1.66612 1.45619 1.11150 1.32305 1.45823 1.20472 0.94706 0.89362 0.94006 1.22832 1.00371 0.94010 1.00253 1.23074 0.97523 0.96206 0.98769 1.20082 0.93317 0.89936 0.93069 1.42617 1.37804 1.41918 1.17665 1.19032 1.06529 1.11217 1.00303 0.92849 1.25601 0.98685 0.98435 1.03065 1.69899 1.28234 1.26298 1.39004 0.85322 0.77572 0.78915 0.79442 1.20084 1.22347 1.17241 0.86649 0.87926 0.87578 0.72374 0.84600 0.80491 0.80139 0.74306 0.91488 0.91414 0.82757 0.84846 0.95320 0.94520 0.79805 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.32 71.24 0.74 -1.32 16 2 C 0.51 10.73 7.67 87.66 0.67 11.40 16 3 O -0.57 -16.00 14.83 -3.03 -0.04 -16.04 16 4 N -0.66 -14.01 4.69 -302.98 -1.42 -15.43 16 5 C 0.22 4.73 6.26 38.59 0.24 4.97 16 6 C -0.19 -4.02 8.61 22.41 0.19 -3.82 16 7 C 0.14 2.43 7.30 22.44 0.16 2.59 16 8 F -0.14 -2.57 17.26 44.97 0.78 -1.79 16 9 C -0.17 -1.81 10.00 22.29 0.22 -1.59 16 10 C -0.02 -0.20 9.52 22.51 0.21 0.01 16 11 C -0.19 -3.35 5.89 -19.98 -0.12 -3.47 16 12 C 0.56 11.90 7.75 86.66 0.67 12.57 16 13 O -0.58 -15.99 13.88 -4.07 -0.06 -16.05 16 14 N -0.70 -11.38 5.50 -470.14 -2.58 -13.97 16 15 C 0.14 2.99 5.78 85.63 0.49 3.48 16 16 C -0.16 -2.84 9.62 25.64 0.25 -2.59 16 17 C -0.14 -3.31 9.62 25.64 0.25 -3.06 16 18 C 0.16 5.77 6.36 85.63 0.54 6.32 16 19 N -0.75 -34.51 5.40 -347.18 -1.87 -36.38 16 20 C -0.24 -13.73 10.47 84.03 0.88 -12.85 16 21 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 22 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 23 N -0.98 -63.18 13.97 21.65 0.30 -62.88 16 24 Si 0.96 44.63 27.73 68.60 1.90 46.54 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 28 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 1.16 8.12 -2.39 -0.02 1.14 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.43 8.92 6.29 -92.71 -0.58 8.34 16 32 H 0.14 3.28 6.49 -2.91 -0.02 3.26 16 33 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.18 0.37 6.43 -2.91 -0.02 0.36 16 35 H 0.42 3.54 6.52 -92.71 -0.60 2.93 16 36 H 0.07 1.87 5.27 -2.39 -0.01 1.85 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 1.38 5.28 -2.39 -0.01 1.37 16 42 H 0.37 15.76 5.52 -92.71 -0.51 15.25 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -80.80 367.71 2.21 -78.59 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.66 Total: 28.22 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.88 Total: 9.19 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -5.58 Total: -128.66 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.10 Total: -32.09 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.54 kcal Total: -80.80 2.21 -78.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321083887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.006 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds