Wall clock time and date at job start Tue Mar 31 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46760 * 124.34669 * 2 1 4 4 C 1.54480 * 105.54782 * 162.91674 * 3 2 1 5 5 H 1.09000 * 110.97126 * 267.34164 * 4 3 2 6 6 N 1.46494 * 110.96924 * 143.57841 * 4 3 2 7 7 C 1.34778 * 120.00094 * 155.00069 * 6 4 3 8 8 O 1.21356 * 120.00107 * 0.02562 * 7 6 4 9 9 C 1.49347 * 120.00186 * 179.97438 * 7 6 4 10 10 O 1.21385 * 120.00021 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00186 * 179.97438 * 9 7 6 12 12 C 1.39933 * 119.99954 * 180.02562 * 11 9 7 13 13 C 1.40459 * 125.98150 * 359.71648 * 12 11 9 14 14 C 1.35211 * 107.86499 * 179.89046 * 13 12 11 15 15 N 1.34982 * 107.87685 * 0.36982 * 14 13 12 16 16 C 1.46508 * 125.97026 * 179.80250 * 15 14 13 17 17 C 1.50706 * 109.46713 * 124.98157 * 16 15 14 18 18 H 1.07995 * 120.00123 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99559 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00013 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47293 * 89.99801 * 21 19 17 23 23 H 1.48497 * 109.46720 * 209.99857 * 21 19 17 24 24 H 1.48503 * 109.47013 * 329.99841 * 21 19 17 25 25 N 1.31275 * 125.97783 * 180.02562 * 12 11 9 26 26 C 1.54861 * 101.66110 * 25.43666 * 4 3 2 27 27 C 1.34415 * 124.35027 * 179.97438 * 2 1 3 28 28 O 1.21284 * 124.94104 * 0.41322 * 27 2 1 29 29 H 1.09004 * 109.46636 * 90.00176 * 1 2 3 30 30 H 1.09003 * 109.47223 * 209.99680 * 1 2 3 31 31 H 1.08995 * 109.47125 * 330.00121 * 1 2 3 32 32 H 1.09002 * 110.24740 * 281.96247 * 3 2 1 33 33 H 1.09002 * 110.24616 * 43.87772 * 3 2 1 34 34 H 0.97000 * 120.00180 * 334.99774 * 6 4 3 35 35 H 0.97001 * 119.99757 * 0.02562 * 11 9 7 36 36 H 1.08001 * 126.06374 * 0.03341 * 13 12 11 37 37 H 1.08002 * 126.05957 * 180.13964 * 14 13 12 38 38 H 1.08995 * 109.47257 * 244.97767 * 16 15 14 39 39 H 1.08998 * 109.46962 * 4.98753 * 16 15 14 40 40 H 0.96997 * 119.99844 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.46775 * 216.51886 * 26 4 3 42 42 H 1.08998 * 110.49332 * 93.88070 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7013 0.7509 0.4372 5 1 3.8259 0.8475 1.5157 6 7 4.7416 1.4946 -0.2774 7 6 5.9659 1.6341 0.2685 8 8 6.2067 1.1432 1.3520 9 6 7.0267 2.3918 -0.4602 10 8 6.7861 2.8824 -1.5441 11 7 8.2508 2.5317 0.0860 12 6 9.2445 3.2421 -0.5967 13 6 9.1062 3.8532 -1.8538 14 6 10.2860 4.4366 -2.1635 15 7 11.1443 4.1998 -1.1490 16 6 12.5366 4.6501 -1.0769 17 6 12.7474 5.4286 0.1962 18 1 11.9266 5.5732 0.8829 19 6 13.9885 5.9555 0.4845 20 7 14.1724 6.6353 1.5951 21 14 15.4084 5.7048 -0.7032 22 1 15.4373 6.8205 -1.6828 23 1 16.6865 5.6762 0.0524 24 1 15.2302 4.4183 -1.4233 25 7 10.4710 3.4492 -0.1768 26 6 3.6898 -0.7378 0.0109 27 6 2.2235 -1.1097 0.0005 28 8 1.7946 -2.2442 -0.0062 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.3309 1.6428 -1.0005 33 1 1.8973 1.9390 0.7088 34 1 4.5493 1.8867 -1.1436 35 1 8.4430 2.1400 0.9523 36 1 8.2148 3.8583 -2.4636 37 1 10.5041 4.9903 -3.0647 38 1 13.1993 3.7848 -1.0875 39 1 12.7571 5.2873 -1.9332 40 1 15.0457 7.0056 1.7981 41 1 4.2324 -1.3457 0.7349 42 1 4.1198 -0.8532 -0.9840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322449187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:03 Heat of formation + Delta-G solvation = 3.577387 kcal Electronic energy + Delta-G solvation = -27307.297524 eV Core-core repulsion = 23097.458574 eV Total energy + Delta-G solvation = -4209.838950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44904 -40.91528 -40.18161 -38.67281 -37.14149 -35.52257 -34.72069 -33.34572 -31.98049 -31.38948 -29.57728 -28.25927 -27.64193 -27.01923 -25.28888 -22.83298 -22.21259 -21.43069 -20.64401 -20.12892 -19.80445 -18.55196 -17.62327 -17.18858 -17.09377 -16.67312 -16.44597 -16.18566 -16.03490 -15.43157 -15.16476 -14.82117 -14.39477 -14.33106 -14.21030 -13.96965 -13.85164 -13.59198 -13.26904 -12.98712 -12.85323 -12.62976 -12.47228 -12.45039 -12.28797 -11.92879 -11.71599 -11.24047 -10.82415 -10.77250 -10.55269 -10.18438 -10.09303 -9.76713 -9.75518 -9.60178 -9.33292 -8.80865 -8.36574 -7.71670 -6.27472 -4.30567 1.00995 1.76350 2.08047 2.41350 2.50920 2.85329 2.95185 3.12599 3.19133 3.22009 3.52359 3.58294 3.71861 3.87234 4.16237 4.19141 4.27763 4.32010 4.71612 4.78245 4.81070 4.99437 5.00458 5.17262 5.20386 5.26348 5.30372 5.54441 5.67239 5.86447 5.93828 6.14650 6.26034 6.33929 6.48865 6.56988 6.64413 7.08958 7.12432 7.25440 7.44826 7.62646 7.67998 7.79560 8.26409 8.39834 8.81570 9.26809 10.85085 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.001778 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.432920 B =15743.472986 C =15904.843631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.624 5.624 3 C 0.098 3.902 4 C 0.134 3.866 5 H 0.122 0.878 6 N -0.694 5.694 7 C 0.522 3.478 8 O -0.506 6.506 9 C 0.514 3.486 10 O -0.498 6.498 11 N -0.596 5.596 12 C 0.252 3.748 13 C -0.282 4.282 14 C 0.054 3.946 15 N -0.314 5.314 16 C 0.231 3.769 17 C -0.537 4.537 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.886 5.886 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.264 1.264 25 N -0.285 5.285 26 C -0.170 4.170 27 C 0.522 3.478 28 O -0.526 6.526 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.418 0.582 35 H 0.425 0.575 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.269 0.731 41 H 0.113 0.887 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.643 -9.495 -6.525 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.359 5.359 3 C -0.026 4.026 4 C 0.029 3.971 5 H 0.140 0.860 6 N -0.349 5.349 7 C 0.302 3.698 8 O -0.379 6.379 9 C 0.294 3.706 10 O -0.371 6.371 11 N -0.245 5.245 12 C -0.001 4.001 13 C -0.313 4.313 14 C -0.096 4.096 15 N -0.095 5.095 16 C 0.112 3.888 17 C -0.575 4.575 18 H 0.104 0.896 19 C -0.127 4.127 20 N -0.523 5.523 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.189 1.189 25 N -0.116 5.116 26 C -0.211 4.211 27 C 0.309 3.691 28 O -0.401 6.401 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.255 0.745 35 H 0.262 0.738 36 H 0.181 0.819 37 H 0.189 0.811 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.853 -10.160 -5.448 26.493 hybrid contribution 0.321 0.308 -1.104 1.190 sum -23.532 -9.853 -6.552 26.339 Atomic orbital electron populations 1.21596 0.77405 1.03437 1.02190 1.48144 1.06775 1.06837 1.74172 1.22310 0.89424 0.87776 1.03112 1.21899 0.85947 0.90102 0.99183 0.86019 1.45541 1.10316 1.55099 1.23926 1.19922 0.83390 0.80739 0.85703 1.90824 1.80360 1.46616 1.20136 1.19784 0.82876 0.81876 0.86087 1.90720 1.80100 1.46347 1.19966 1.41974 1.08592 1.51135 1.22765 1.19002 0.89185 0.98653 0.93240 1.21526 1.00484 1.10830 0.98442 1.22585 0.90480 1.01444 0.95072 1.48712 1.11646 1.37762 1.11413 1.20110 0.72892 0.95834 0.99975 1.21091 0.98563 1.33665 1.04230 0.89586 1.24833 0.98191 0.94356 0.95326 1.69868 1.23965 1.34635 1.23797 0.86906 0.82517 0.79276 0.81395 1.19694 1.20481 1.18858 1.77477 1.03652 1.16870 1.13627 1.22919 0.94952 0.97295 1.05981 1.20787 0.88883 0.84374 0.75046 1.90755 1.78446 1.21039 1.49870 0.92326 0.90438 0.90720 0.89951 0.88865 0.74471 0.73758 0.81947 0.81098 0.93826 0.93144 0.92111 0.86867 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 10.96 59.85 0.66 1.06 16 2 N -0.62 -3.63 3.33 -180.28 -0.60 -4.23 16 3 C 0.10 0.33 7.07 -3.12 -0.02 0.31 16 4 C 0.13 0.71 3.54 -66.18 -0.23 0.47 16 5 H 0.12 0.72 7.54 -51.93 -0.39 0.32 16 6 N -0.69 -4.39 5.15 -52.57 -0.27 -4.66 16 7 C 0.52 5.20 7.89 -11.63 -0.09 5.11 16 8 O -0.51 -6.11 16.12 5.49 0.09 -6.02 16 9 C 0.51 6.47 7.85 -11.63 -0.09 6.38 16 10 O -0.50 -6.77 13.60 5.47 0.07 -6.70 16 11 N -0.60 -8.85 5.43 -11.58 -0.06 -8.92 16 12 C 0.25 4.70 8.10 -154.55 -1.25 3.45 16 13 C -0.28 -4.93 9.60 -39.82 -0.38 -5.31 16 14 C 0.05 0.95 11.43 -17.24 -0.20 0.75 16 15 N -0.31 -6.73 3.67 -62.56 -0.23 -6.96 16 16 C 0.23 5.25 5.33 -5.19 -0.03 5.22 16 17 C -0.54 -14.78 9.79 -34.44 -0.34 -15.12 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 21 Si 0.87 19.65 27.47 -169.99 -4.67 14.98 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 25 N -0.29 -6.27 12.42 31.41 0.39 -5.88 16 26 C -0.17 -1.11 6.60 -26.62 -0.18 -1.28 16 27 C 0.52 4.52 8.02 -10.86 -0.09 4.44 16 28 O -0.53 -6.80 17.59 5.55 0.10 -6.70 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.41 7.93 -51.93 -0.41 0.00 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.18 7.80 -51.93 -0.40 -0.23 16 33 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.42 2.02 7.90 -40.82 -0.32 1.69 16 35 H 0.42 5.80 8.29 -40.82 -0.34 5.46 16 36 H 0.16 2.62 5.91 -52.49 -0.31 2.31 16 37 H 0.17 2.32 8.06 -52.49 -0.42 1.89 16 38 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 39 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -35.90 366.30 -6.29 -42.19 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.07 Total: 5.22 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.34 Total: 7.50 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.00 Total: -55.99 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.26 Total: -19.42 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.90 -6.29 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322449187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.767 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds