Wall clock time and date at job start Tue Mar 31 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46760 * 124.34669 * 2 1 4 4 C 1.54480 * 105.54782 * 162.91674 * 3 2 1 5 5 H 1.09000 * 110.97126 * 267.34164 * 4 3 2 6 6 N 1.46494 * 110.96924 * 143.57841 * 4 3 2 7 7 C 1.34778 * 120.00094 * 155.00069 * 6 4 3 8 8 O 1.21356 * 120.00107 * 0.02562 * 7 6 4 9 9 C 1.49347 * 120.00186 * 179.97438 * 7 6 4 10 10 O 1.21385 * 120.00021 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00186 * 179.97438 * 9 7 6 12 12 C 1.39933 * 119.99954 * 180.02562 * 11 9 7 13 13 C 1.40459 * 125.98150 * 359.71648 * 12 11 9 14 14 C 1.35211 * 107.86499 * 179.89046 * 13 12 11 15 15 N 1.34982 * 107.87685 * 0.36982 * 14 13 12 16 16 C 1.46508 * 125.97026 * 179.80250 * 15 14 13 17 17 C 1.50706 * 109.46713 * 124.98157 * 16 15 14 18 18 H 1.07995 * 120.00123 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99559 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00013 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47293 * 89.99801 * 21 19 17 23 23 H 1.48497 * 109.46720 * 209.99857 * 21 19 17 24 24 H 1.48503 * 109.47013 * 329.99841 * 21 19 17 25 25 N 1.31275 * 125.97783 * 180.02562 * 12 11 9 26 26 C 1.54861 * 101.66110 * 25.43666 * 4 3 2 27 27 C 1.34415 * 124.35027 * 179.97438 * 2 1 3 28 28 O 1.21284 * 124.94104 * 0.41322 * 27 2 1 29 29 H 1.09004 * 109.46636 * 90.00176 * 1 2 3 30 30 H 1.09003 * 109.47223 * 209.99680 * 1 2 3 31 31 H 1.08995 * 109.47125 * 330.00121 * 1 2 3 32 32 H 1.09002 * 110.24740 * 281.96247 * 3 2 1 33 33 H 1.09002 * 110.24616 * 43.87772 * 3 2 1 34 34 H 0.97000 * 120.00180 * 334.99774 * 6 4 3 35 35 H 0.97001 * 119.99757 * 0.02562 * 11 9 7 36 36 H 1.08001 * 126.06374 * 0.03341 * 13 12 11 37 37 H 1.08002 * 126.05957 * 180.13964 * 14 13 12 38 38 H 1.08995 * 109.47257 * 244.97767 * 16 15 14 39 39 H 1.08998 * 109.46962 * 4.98753 * 16 15 14 40 40 H 0.96997 * 119.99844 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.46775 * 216.51886 * 26 4 3 42 42 H 1.08998 * 110.49332 * 93.88070 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7013 0.7509 0.4372 5 1 3.8259 0.8475 1.5157 6 7 4.7416 1.4946 -0.2774 7 6 5.9659 1.6341 0.2685 8 8 6.2067 1.1432 1.3520 9 6 7.0267 2.3918 -0.4602 10 8 6.7861 2.8824 -1.5441 11 7 8.2508 2.5317 0.0860 12 6 9.2445 3.2421 -0.5967 13 6 9.1062 3.8532 -1.8538 14 6 10.2860 4.4366 -2.1635 15 7 11.1443 4.1998 -1.1490 16 6 12.5366 4.6501 -1.0769 17 6 12.7474 5.4286 0.1962 18 1 11.9266 5.5732 0.8829 19 6 13.9885 5.9555 0.4845 20 7 14.1724 6.6353 1.5951 21 14 15.4084 5.7048 -0.7032 22 1 15.4373 6.8205 -1.6828 23 1 16.6865 5.6762 0.0524 24 1 15.2302 4.4183 -1.4233 25 7 10.4710 3.4492 -0.1768 26 6 3.6898 -0.7378 0.0109 27 6 2.2235 -1.1097 0.0005 28 8 1.7946 -2.2442 -0.0062 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.3309 1.6428 -1.0005 33 1 1.8973 1.9390 0.7088 34 1 4.5493 1.8867 -1.1436 35 1 8.4430 2.1400 0.9523 36 1 8.2148 3.8583 -2.4636 37 1 10.5041 4.9903 -3.0647 38 1 13.1993 3.7848 -1.0875 39 1 12.7571 5.2873 -1.9332 40 1 15.0457 7.0056 1.7981 41 1 4.2324 -1.3457 0.7349 42 1 4.1198 -0.8532 -0.9840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322449187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:02 Heat of formation + Delta-G solvation = -25.422182 kcal Electronic energy + Delta-G solvation = -27308.555040 eV Core-core repulsion = 23097.458574 eV Total energy + Delta-G solvation = -4211.096466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48075 -41.86069 -41.15987 -39.66689 -37.85670 -36.58617 -35.64821 -35.13966 -33.12698 -32.54399 -31.03662 -29.28552 -28.68527 -27.67978 -26.28041 -24.38445 -23.14165 -22.35707 -21.84396 -21.17225 -20.64981 -19.55060 -19.11216 -18.36151 -18.06741 -17.69544 -17.38205 -17.13196 -16.84390 -16.63767 -16.24738 -16.01184 -15.64351 -15.24253 -15.03664 -14.85613 -14.73372 -14.59171 -14.40625 -14.33413 -13.88353 -13.86251 -13.38985 -13.22777 -13.11040 -12.92281 -12.73251 -12.47573 -12.36444 -12.33876 -11.82599 -11.67224 -11.47480 -11.26511 -10.85946 -10.80232 -10.42083 -9.82745 -9.80880 -9.18553 -8.36410 -6.46956 0.03698 0.80161 1.13973 1.37818 1.40807 1.43013 1.50377 1.74023 1.74585 2.01764 2.26633 2.30193 2.52978 2.96378 3.13913 3.28228 3.39712 3.72942 3.89077 3.93100 4.19198 4.38287 4.42495 4.56276 4.57985 4.63038 4.68371 4.68700 4.79511 4.83508 4.86919 4.90219 4.97760 5.10175 5.25152 5.43896 5.77644 5.78289 5.96749 5.99818 6.12301 6.39665 6.54838 6.59405 6.76485 6.95672 7.01714 7.16049 8.80611 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.001778 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.432920 B =15743.472986 C =15904.843631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.101 3.899 4 C 0.138 3.862 5 H 0.120 0.880 6 N -0.670 5.670 7 C 0.533 3.467 8 O -0.528 6.528 9 C 0.519 3.481 10 O -0.503 6.503 11 N -0.603 5.603 12 C 0.258 3.742 13 C -0.286 4.286 14 C 0.063 3.937 15 N -0.341 5.341 16 C 0.238 3.762 17 C -0.548 4.548 18 H 0.026 0.974 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.956 3.044 22 H -0.252 1.252 23 H -0.283 1.283 24 H -0.238 1.238 25 N -0.345 5.345 26 C -0.166 4.166 27 C 0.513 3.487 28 O -0.579 6.579 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.428 0.572 35 H 0.427 0.573 36 H 0.180 0.820 37 H 0.216 0.784 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.272 0.728 41 H 0.104 0.896 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.483 -8.978 -9.341 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.352 5.352 3 C -0.021 4.021 4 C 0.033 3.967 5 H 0.138 0.862 6 N -0.325 5.325 7 C 0.312 3.688 8 O -0.404 6.404 9 C 0.299 3.701 10 O -0.376 6.376 11 N -0.252 5.252 12 C 0.004 3.996 13 C -0.317 4.317 14 C -0.085 4.085 15 N -0.123 5.123 16 C 0.118 3.882 17 C -0.586 4.586 18 H 0.045 0.955 19 C -0.185 4.185 20 N -0.581 5.581 21 Si 0.777 3.223 22 H -0.176 1.176 23 H -0.209 1.209 24 H -0.162 1.162 25 N -0.176 5.176 26 C -0.207 4.207 27 C 0.302 3.698 28 O -0.459 6.459 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.268 0.732 35 H 0.266 0.734 36 H 0.197 0.803 37 H 0.232 0.768 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.780 -9.613 -8.304 27.846 hybrid contribution 0.347 0.160 -0.186 0.425 sum -24.433 -9.454 -8.490 27.539 Atomic orbital electron populations 1.21762 0.76387 1.04079 1.02922 1.48290 1.07615 1.06835 1.72410 1.22494 0.87469 0.86981 1.05191 1.21943 0.86639 0.89173 0.98958 0.86237 1.45410 1.09086 1.53898 1.24065 1.19395 0.83708 0.80490 0.85197 1.90836 1.80739 1.47746 1.21056 1.20267 0.82535 0.81310 0.85952 1.90696 1.80157 1.46459 1.20296 1.42145 1.08773 1.51289 1.23000 1.19374 0.88914 0.97663 0.93646 1.21807 1.01123 1.10698 0.98078 1.23350 0.89558 1.00327 0.95230 1.48564 1.11744 1.39305 1.12651 1.19926 0.74283 0.95551 0.98404 1.21244 0.97230 1.34601 1.05545 0.95524 1.25936 1.01642 0.93528 0.97417 1.70053 1.25055 1.36393 1.26607 0.85613 0.77129 0.80852 0.78750 1.17606 1.20880 1.16153 1.77382 1.05524 1.19167 1.15505 1.22866 0.93694 0.97931 1.06242 1.21105 0.89910 0.84240 0.74578 1.90722 1.79377 1.23170 1.52647 0.91558 0.92099 0.87806 0.87619 0.86327 0.73152 0.73447 0.80285 0.76783 0.93627 0.89660 0.91919 0.87715 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.96 127.77 1.40 1.99 16 2 N -0.62 -5.95 3.33 -842.89 -2.81 -8.76 16 3 C 0.10 0.34 7.07 86.83 0.61 0.96 16 4 C 0.14 1.13 3.54 46.13 0.16 1.30 16 5 H 0.12 1.16 7.54 -2.39 -0.02 1.14 16 6 N -0.67 -6.73 5.15 -438.60 -2.26 -8.99 16 7 C 0.53 9.76 7.89 87.24 0.69 10.44 16 8 O -0.53 -12.30 16.12 -3.26 -0.05 -12.35 16 9 C 0.52 12.36 7.85 87.24 0.69 13.04 16 10 O -0.50 -12.56 13.60 -3.36 -0.05 -12.61 16 11 N -0.60 -17.82 5.43 -308.89 -1.68 -19.50 16 12 C 0.26 9.60 8.10 133.40 1.08 10.68 16 13 C -0.29 -9.54 9.60 22.11 0.21 -9.32 16 14 C 0.06 2.10 11.43 83.51 0.95 3.05 16 15 N -0.34 -14.47 3.67 -351.84 -1.29 -15.76 16 16 C 0.24 10.60 5.33 85.63 0.46 11.05 16 17 C -0.55 -31.02 9.79 25.60 0.25 -30.77 16 18 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 19 C 0.01 0.76 5.47 84.66 0.46 1.22 16 20 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 21 Si 0.96 39.84 27.47 68.60 1.88 41.73 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 25 N -0.35 -15.50 12.42 -54.53 -0.68 -16.18 16 26 C -0.17 -1.99 6.60 30.67 0.20 -1.79 16 27 C 0.51 8.64 8.02 87.90 0.71 9.35 16 28 O -0.58 -15.49 17.59 -3.04 -0.05 -15.54 16 29 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.06 0.63 7.93 -2.39 -0.02 0.61 16 31 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.11 -0.03 7.80 -2.39 -0.02 -0.05 16 33 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.43 2.68 7.90 -92.71 -0.73 1.95 16 35 H 0.43 11.97 8.29 -92.71 -0.77 11.21 16 36 H 0.18 5.29 5.91 -2.91 -0.02 5.28 16 37 H 0.22 4.91 8.06 -2.91 -0.02 4.89 16 38 H 0.05 2.00 7.20 -2.39 -0.02 1.98 16 39 H 0.09 3.20 7.50 -2.39 -0.02 3.18 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.12 1.25 8.08 -2.39 -0.02 1.23 16 Total: -1.00 -83.70 366.30 0.73 -82.97 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.46 Total: 21.02 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 7.88 Total: 21.20 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -8.42 Total: -126.42 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.15 Total: -40.50 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.88 Total: 41.73 kcal Total: -83.70 0.73 -82.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322449187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.548 kcal (2) G-P(sol) polarization free energy of solvation -83.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds