Wall clock time and date at job start Tue Mar 31 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36899 * 120.07627 * 2 1 4 4 N 1.36003 * 134.59740 * 359.97438 * 3 2 1 5 5 H 0.97001 * 126.22111 * 0.05958 * 4 3 2 6 6 C 1.36448 * 107.56215 * 180.02562 * 4 3 2 7 7 C 1.50705 * 125.18132 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47510 * 124.99959 * 7 6 4 9 9 C 1.50701 * 109.47308 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99510 * 359.97438 * 9 8 7 11 11 N 1.34769 * 119.99903 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99732 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47031 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46893 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00246 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99786 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99783 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00015 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47362 * 90.00095 * 18 16 14 20 20 H 1.48502 * 109.46912 * 209.99825 * 18 16 14 21 21 H 1.48500 * 109.46837 * 329.99731 * 18 16 14 22 22 N 1.30124 * 109.64585 * 359.97438 * 6 4 3 23 23 C 1.35657 * 109.16532 * 359.75976 * 22 6 4 24 24 C 1.41333 * 134.22226 * 179.48373 * 23 22 6 25 25 O 1.35104 * 120.33163 * 0.73729 * 24 23 22 26 26 N 1.32411 * 119.34053 * 180.45402 * 24 23 22 27 27 C 1.33203 * 121.53123 * 0.25944 * 26 24 23 28 28 O 1.21968 * 119.13423 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47721 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47428 * 299.97773 * 1 2 3 31 31 H 1.08996 * 109.47149 * 59.97917 * 1 2 3 32 32 H 1.08999 * 109.46678 * 244.99644 * 7 6 4 33 33 H 1.09001 * 109.46646 * 4.99640 * 7 6 4 34 34 H 1.09001 * 109.46820 * 300.00100 * 8 7 6 35 35 H 1.09001 * 109.47029 * 59.99493 * 8 7 6 36 36 H 0.96993 * 120.00318 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47291 * 300.00020 * 12 11 9 38 38 H 1.08994 * 109.47251 * 60.00088 * 12 11 9 39 39 H 1.08999 * 109.47133 * 299.99566 * 13 12 11 40 40 H 1.09001 * 109.47292 * 60.00237 * 13 12 11 41 41 H 0.97006 * 120.00006 * 180.02562 * 17 16 14 42 42 H 0.96700 * 114.00264 * 179.72131 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1511 1.1847 0.0000 4 7 1.7916 2.4963 -0.0004 5 1 0.8854 2.8423 0.0000 6 6 2.9374 3.2373 -0.0007 7 6 2.9977 4.7431 -0.0007 8 6 3.8451 5.2196 1.1806 9 6 3.9048 6.7255 1.1810 10 8 3.3269 7.3554 0.3207 11 7 4.6004 7.3720 2.1372 12 6 4.6589 8.8358 2.1372 13 6 5.5063 9.3124 3.3187 14 6 5.5670 10.8182 3.3183 15 1 5.0530 11.3791 2.5518 16 6 6.2787 11.4797 4.2965 17 7 6.3313 12.7937 4.2964 18 14 7.1683 10.5094 5.6218 19 1 8.5501 10.2064 5.1703 20 1 7.2204 11.3106 6.8711 21 1 6.4416 9.2399 5.8778 22 7 3.9702 2.4457 0.0000 23 6 3.5442 1.1578 0.0062 24 6 4.1963 -0.0961 0.0007 25 8 5.5456 -0.1635 0.0010 26 7 3.4716 -1.2043 0.0008 27 6 2.1401 -1.1659 0.0009 28 8 1.5158 -2.2137 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 3.4460 5.0887 -0.9322 33 1 1.9892 5.1470 0.0891 34 1 3.3968 4.8739 2.1121 35 1 4.8534 4.8156 1.0908 36 1 5.0623 6.8682 2.8254 37 1 5.1076 9.1815 1.2059 38 1 3.6506 9.2398 2.2265 39 1 5.0580 8.9667 4.2502 40 1 6.5147 8.9085 3.2289 41 1 6.8323 13.2591 4.9844 42 1 5.8945 -1.0654 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323782563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:03 Heat of formation + Delta-G solvation = -27.076367 kcal Electronic energy + Delta-G solvation = -27231.082188 eV Core-core repulsion = 23019.913991 eV Total energy + Delta-G solvation = -4211.168197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.53189 -40.95056 -39.47856 -39.22851 -36.63657 -35.31752 -35.16877 -33.77988 -33.25976 -32.83671 -30.43542 -29.41424 -28.03236 -26.37305 -24.82508 -24.07791 -23.18181 -21.71007 -20.86140 -20.25114 -20.07365 -19.79133 -18.51454 -17.53625 -17.14454 -16.94242 -16.72024 -16.25908 -15.86637 -15.48612 -15.15436 -15.12737 -15.08009 -14.36153 -14.31920 -14.16295 -14.07826 -13.83423 -13.32452 -13.07215 -12.99775 -12.64799 -12.46630 -11.70074 -11.53828 -11.45023 -11.38075 -11.23484 -11.10754 -11.00031 -10.60175 -10.44579 -10.34327 -10.25698 -10.00809 -9.62578 -9.35458 -8.69928 -8.61701 -8.60046 -6.14852 -4.15321 0.17767 0.86524 1.16877 2.08192 2.31970 2.56037 2.80554 3.22470 3.22617 3.30174 3.30385 3.31225 3.42691 3.61809 3.98560 4.27076 4.34221 4.39271 4.48370 4.50665 4.66028 4.79910 4.93731 4.97735 5.12296 5.18092 5.26286 5.44784 5.58152 5.65921 5.73240 6.04511 6.14200 6.34176 6.50104 6.53819 6.66191 7.02009 7.07531 7.17873 7.23966 7.61925 7.62279 7.79499 8.37706 8.45563 8.89178 9.45147 10.98072 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.001812 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.455173 B =15447.032492 C =16056.731022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.520 5.520 3 C 0.314 3.686 4 N -0.561 5.561 5 H 0.433 0.567 6 C 0.257 3.743 7 C -0.018 4.018 8 C -0.136 4.136 9 C 0.508 3.492 10 O -0.551 6.551 11 N -0.724 5.724 12 C 0.129 3.871 13 C -0.023 4.023 14 C -0.524 4.524 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 N -0.410 5.410 23 C -0.091 4.091 24 C 0.524 3.476 25 O -0.426 6.426 26 N -0.611 5.611 27 C 0.679 3.321 28 O -0.525 6.525 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.022 0.978 40 H 0.018 0.982 41 H 0.265 0.735 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 -26.701 -8.320 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.249 5.249 3 C 0.086 3.914 4 N -0.174 5.174 5 H 0.274 0.726 6 C -0.010 4.010 7 C -0.058 4.058 8 C -0.177 4.177 9 C 0.293 3.707 10 O -0.429 6.429 11 N -0.374 5.374 12 C 0.007 3.993 13 C -0.060 4.060 14 C -0.562 4.562 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 N -0.127 5.127 23 C -0.218 4.218 24 C 0.320 3.680 25 O -0.219 6.219 26 N -0.369 5.369 27 C 0.381 3.619 28 O -0.399 6.399 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -9.548 -26.814 -8.840 29.804 hybrid contribution -0.780 -0.486 1.153 1.474 sum -10.328 -27.300 -7.687 30.183 Atomic orbital electron populations 1.22175 0.76648 1.07182 1.02780 1.45813 1.09613 1.02792 1.66694 1.18013 0.91690 0.81848 0.99825 1.42743 1.11933 1.02559 1.60194 0.72626 1.23698 0.78520 0.95946 1.02875 1.19900 1.03064 0.81407 1.01402 1.21595 1.03423 0.93343 0.99303 1.20394 0.79060 0.89490 0.81740 1.90701 1.45672 1.69053 1.37500 1.46331 1.51975 1.09477 1.29624 1.21526 1.01018 0.76048 1.00707 1.19800 0.94846 0.98142 0.93259 1.20911 1.32957 0.88827 1.13554 0.90637 1.25010 0.95920 0.94803 0.97583 1.69902 1.41829 1.07100 1.34752 0.86748 0.80420 0.80361 0.81512 1.20173 1.21285 1.19097 1.70403 1.27952 0.97920 1.16464 1.18189 0.87783 0.92605 1.23211 1.19429 0.84431 0.86436 0.77695 1.85107 1.14519 1.37140 1.85118 1.69634 1.05731 1.25876 1.35657 1.17094 0.84213 0.82037 0.78600 1.91016 1.66192 1.28622 1.54042 0.86849 0.90514 0.90546 0.87060 0.88599 0.88799 0.87324 0.76883 0.91851 0.91918 0.96023 0.96359 0.92524 0.72283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.24 10.62 59.85 0.64 0.88 16 2 N -0.52 -4.22 3.02 -128.23 -0.39 -4.61 16 3 C 0.31 2.40 7.75 -153.77 -1.19 1.21 16 4 N -0.56 -2.81 6.15 -9.12 -0.06 -2.86 16 5 H 0.43 0.61 8.96 -40.82 -0.37 0.24 16 6 C 0.26 1.84 7.41 -154.43 -1.14 0.69 16 7 C -0.02 -0.13 5.13 -27.88 -0.14 -0.27 16 8 C -0.14 -1.12 5.64 -27.89 -0.16 -1.28 16 9 C 0.51 6.68 7.83 -10.99 -0.09 6.59 16 10 O -0.55 -9.23 15.98 5.56 0.09 -9.15 16 11 N -0.72 -10.40 5.56 -60.30 -0.33 -10.73 16 12 C 0.13 2.44 5.61 -4.04 -0.02 2.42 16 13 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 14 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 15 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 18 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 22 N -0.41 -4.00 11.25 -8.05 -0.09 -4.09 16 23 C -0.09 -0.88 7.23 -84.59 -0.61 -1.49 16 24 C 0.52 4.93 7.95 -16.13 -0.13 4.80 16 25 O -0.43 -3.06 13.56 -17.02 -0.23 -3.29 16 26 N -0.61 -6.69 10.35 -16.56 -0.17 -6.86 16 27 C 0.68 7.88 8.33 -88.36 -0.74 7.15 16 28 O -0.53 -7.54 16.46 4.95 0.08 -7.46 16 29 H 0.11 0.65 6.86 -51.93 -0.36 0.29 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.68 8.47 -40.82 -0.35 4.34 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 40 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.42 1.05 8.98 45.56 0.41 1.46 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -38.34 366.67 -7.99 -46.33 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.39 Total: 0.00 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -4.13 Total: 7.35 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.27 Total: -55.18 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.90 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.34 -7.99 -46.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323782563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -38.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds