Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 119.99941 * 2 1 4 4 O 1.21517 * 120.00198 * 176.25679 * 3 2 1 5 5 C 1.48154 * 120.00120 * 356.25086 * 3 2 1 6 6 C 1.39895 * 121.12749 * 215.15688 * 5 3 2 7 7 N 1.31767 * 119.78916 * 179.70931 * 6 5 3 8 8 N 1.28270 * 122.41567 * 0.59224 * 7 6 5 9 9 C 1.32280 * 122.43907 * 359.69122 * 8 7 6 10 10 O 1.35705 * 120.07817 * 180.02562 * 9 8 7 11 11 C 1.39234 * 119.83884 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00104 * 179.97438 * 2 1 3 13 13 C 1.53514 * 114.17240 * 59.99762 * 12 2 1 14 14 N 1.47475 * 87.93493 * 220.33032 * 13 12 2 15 15 C 1.46897 * 110.99863 * 138.70422 * 14 13 12 16 16 C 1.50705 * 109.47283 * 170.00229 * 15 14 13 17 17 O 1.21288 * 119.99562 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00102 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99903 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99850 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00109 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00205 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99880 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46928 * 89.99970 * 23 21 19 25 25 H 1.48496 * 109.47063 * 210.00347 * 23 21 19 26 26 H 1.48505 * 109.46970 * 330.00477 * 23 21 19 27 27 C 1.47486 * 87.83455 * 27.01165 * 14 13 12 28 28 H 1.08998 * 109.47393 * 275.32053 * 1 2 3 29 29 H 1.09006 * 109.47179 * 35.32672 * 1 2 3 30 30 H 1.08998 * 109.47290 * 155.32140 * 1 2 3 31 31 H 1.08005 * 120.10109 * 359.97438 * 6 5 3 32 32 H 0.96698 * 114.00254 * 269.97595 * 10 9 8 33 33 H 1.08000 * 121.12214 * 179.97438 * 11 9 8 34 34 H 1.08990 * 113.38412 * 193.08594 * 12 2 1 35 35 H 1.08997 * 113.47088 * 105.55823 * 13 12 2 36 36 H 1.09006 * 113.47441 * 335.10158 * 13 12 2 37 37 H 1.09001 * 109.47577 * 49.99851 * 15 14 13 38 38 H 1.09007 * 109.47327 * 289.99623 * 15 14 13 39 39 H 0.97004 * 119.99914 * 0.02562 * 18 16 15 40 40 H 0.96996 * 120.00211 * 180.02562 * 22 21 19 41 41 H 1.08998 * 113.47785 * 87.75730 * 27 14 13 42 42 H 1.09003 * 113.47625 * 218.21714 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1683 0.0687 5 6 1.4005 2.4488 -0.0839 6 6 1.9261 3.5420 -0.7809 7 7 1.2442 4.6677 -0.8435 8 7 0.1038 4.8134 -0.2746 9 6 -0.4756 3.8427 0.4123 10 8 -1.6839 4.0492 0.9946 11 6 0.1572 2.6087 0.5364 12 6 2.1975 -1.2687 0.0006 13 6 1.9054 -2.1638 -1.2119 14 7 1.9119 -3.3181 -0.2940 15 6 0.8296 -4.2562 -0.6204 16 6 1.0128 -5.5281 0.1671 17 8 1.9522 -5.6415 0.9258 18 7 0.1322 -6.5389 0.0289 19 6 0.2991 -7.6961 0.7449 20 1 1.1360 -7.7975 1.4199 21 6 -0.6085 -8.7386 0.6021 22 7 -0.4488 -9.8476 1.2887 23 14 -2.0565 -8.5629 -0.5649 24 1 -1.6669 -9.0473 -1.9135 25 1 -3.1987 -9.3670 -0.0610 26 1 -2.4549 -7.1347 -0.6479 27 6 1.5044 -2.3943 0.7810 28 1 -0.3634 0.0953 1.0232 29 1 -0.3634 0.8385 -0.5943 30 1 -0.3634 -0.9338 -0.4291 31 1 2.8859 3.4620 -1.2698 32 1 -1.6320 4.3888 1.8985 33 1 -0.2968 1.8020 1.0927 34 1 3.2577 -1.1560 0.2270 35 1 2.7150 -2.1845 -1.9414 36 1 0.9325 -1.9756 -1.6662 37 1 0.8537 -4.4823 -1.6864 38 1 -0.1302 -3.8065 -0.3659 39 1 -0.6194 -6.4480 -0.5777 40 1 -1.0821 -10.5754 1.1888 41 1 0.4245 -2.2678 0.8587 42 1 1.9741 -2.6106 1.7406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323947181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = 28.561547 kcal Electronic energy + Delta-G solvation = -27971.865093 eV Core-core repulsion = 23763.109537 eV Total energy + Delta-G solvation = -4208.755556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08667 -41.01622 -39.47520 -38.22499 -37.98361 -35.83926 -34.05064 -33.78232 -32.03690 -31.74094 -30.35796 -27.95536 -26.62749 -26.14161 -25.38008 -25.03729 -23.53746 -21.40193 -19.76734 -19.61035 -19.31846 -18.50862 -18.32416 -17.69741 -17.46671 -16.88179 -16.42246 -16.24735 -16.04010 -15.40127 -15.00780 -14.80771 -14.66804 -14.52413 -14.28570 -13.70423 -13.60361 -13.27202 -13.04082 -12.91660 -12.85025 -12.70319 -12.54730 -12.25995 -11.98340 -11.85519 -11.28023 -11.20590 -11.02020 -10.95413 -10.80801 -10.65344 -10.40509 -10.02407 -10.01023 -9.61686 -9.21503 -9.07265 -8.43522 -8.22829 -6.35290 -3.87055 -0.33044 0.08445 1.98340 2.17657 2.54332 2.94817 2.95971 3.01743 3.10263 3.44122 3.61252 3.66372 3.77903 3.85205 4.02584 4.05277 4.13485 4.39650 4.41787 4.47282 4.61143 4.72014 4.76661 4.92356 5.02332 5.07156 5.10434 5.15585 5.29035 5.35637 5.37358 5.50508 5.62264 5.76334 5.81481 5.94147 6.24174 6.62781 6.65520 6.86619 7.40789 7.52923 7.96417 8.09311 8.55332 8.90857 9.37377 9.78277 10.77854 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.002145 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.783123 B =13049.949639 C =13865.545152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.592 5.592 3 C 0.564 3.436 4 O -0.511 6.511 5 C -0.107 4.107 6 C 0.082 3.918 7 N -0.212 5.212 8 N -0.244 5.244 9 C 0.257 3.743 10 O -0.470 6.470 11 C -0.112 4.112 12 C 0.116 3.884 13 C -0.018 4.018 14 N -0.431 5.431 15 C 0.008 3.992 16 C 0.454 3.546 17 O -0.555 6.555 18 N -0.593 5.593 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.271 1.271 27 C -0.006 4.006 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.188 0.812 32 H 0.410 0.590 33 H 0.171 0.829 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.369 0.631 40 H 0.274 0.726 41 H 0.074 0.926 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 26.773 -4.145 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.324 5.324 3 C 0.350 3.650 4 O -0.386 6.386 5 C -0.122 4.122 6 C -0.083 4.083 7 N -0.056 5.056 8 N -0.096 5.096 9 C 0.071 3.929 10 O -0.276 6.276 11 C -0.143 4.143 12 C 0.013 3.987 13 C -0.149 4.149 14 N -0.153 5.153 15 C -0.124 4.124 16 C 0.239 3.761 17 O -0.435 6.435 18 N -0.233 5.233 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.135 4.135 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.205 0.795 32 H 0.269 0.731 33 H 0.189 0.811 34 H 0.157 0.843 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.339 27.322 -4.477 27.785 hybrid contribution -2.163 -1.113 -0.044 2.433 sum -4.502 26.210 -4.522 26.975 Atomic orbital electron populations 1.22297 0.79400 1.04304 1.02248 1.47728 1.07040 1.05600 1.72028 1.17949 0.87003 0.82802 0.77275 1.90860 1.12757 1.86660 1.48324 1.21244 0.94955 0.96759 0.99206 1.24615 1.00976 0.88262 0.94436 1.73167 0.99527 1.20382 1.12480 1.72810 1.03720 1.27660 1.05439 1.20769 0.86883 0.90111 0.95125 1.84822 1.21838 1.86979 1.33991 1.23308 0.93190 0.99546 0.98212 1.22963 0.98822 0.79663 0.97266 1.24424 1.02295 0.90911 0.97230 1.68807 1.37002 1.05957 1.03583 1.22545 0.93373 0.95235 1.01251 1.19499 0.85184 0.84662 0.86770 1.90579 1.31818 1.81356 1.39787 1.42213 1.24986 1.15192 1.40874 1.19423 1.12685 0.89534 1.21705 0.86275 1.25042 0.98113 0.95358 0.97694 1.69617 1.37114 1.04878 1.40460 0.86669 0.82832 0.78219 0.81593 1.19603 1.20165 1.19648 1.24401 0.99518 0.90480 0.99132 0.91217 0.90482 0.89810 0.79475 0.73140 0.81142 0.84291 0.88632 0.91078 0.89000 0.92194 0.79814 0.91584 0.90808 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 7.63 59.85 0.46 0.75 16 2 N -0.59 -4.70 3.11 -174.62 -0.54 -5.25 16 3 C 0.56 5.17 7.45 -12.19 -0.09 5.07 16 4 O -0.51 -6.41 16.41 5.35 0.09 -6.32 16 5 C -0.11 -0.79 5.35 -104.60 -0.56 -1.35 16 6 C 0.08 0.65 10.94 -16.96 -0.19 0.46 16 7 N -0.21 -2.04 11.48 30.79 0.35 -1.68 16 8 N -0.24 -2.34 11.50 30.49 0.35 -1.99 16 9 C 0.26 1.79 7.85 -16.99 -0.13 1.65 16 10 O -0.47 -2.40 13.57 -18.82 -0.26 -2.65 16 11 C -0.11 -0.63 7.71 -38.60 -0.30 -0.93 16 12 C 0.12 1.17 4.56 -67.71 -0.31 0.86 16 13 C -0.02 -0.19 7.23 -7.55 -0.05 -0.24 16 14 N -0.43 -6.22 5.82 -246.10 -1.43 -7.65 16 15 C 0.01 0.13 5.30 -4.97 -0.03 0.10 16 16 C 0.45 9.97 7.85 -10.98 -0.09 9.88 16 17 O -0.55 -14.76 16.01 5.55 0.09 -14.67 16 18 N -0.59 -13.68 5.09 -10.96 -0.06 -13.74 16 19 C -0.30 -8.47 10.16 -14.93 -0.15 -8.62 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 23 Si 0.88 18.84 27.74 -169.99 -4.71 14.13 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 27 C -0.01 -0.07 7.11 -7.54 -0.05 -0.12 16 28 H 0.07 0.24 6.84 -51.93 -0.36 -0.12 16 29 H 0.08 0.32 5.82 -51.93 -0.30 0.01 16 30 H 0.08 0.40 5.98 -51.93 -0.31 0.09 16 31 H 0.19 1.16 8.05 -52.48 -0.42 0.74 16 32 H 0.41 0.03 9.06 45.56 0.41 0.44 16 33 H 0.17 0.56 5.13 -52.49 -0.27 0.29 16 34 H 0.14 1.63 7.27 -51.93 -0.38 1.25 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.59 6.81 -51.93 -0.35 0.23 16 37 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 38 H 0.06 0.74 7.30 -51.93 -0.38 0.36 16 39 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.07 0.72 5.72 -51.93 -0.30 0.43 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -37.45 353.88 -5.31 -42.77 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.71 Total: 7.80 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.59 Total: 8.53 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.55 Total: -54.92 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.08 Total: -23.64 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.45 -5.31 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323947181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.328 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds