Wall clock time and date at job start Tue Mar 31 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 119.99941 * 2 1 4 4 O 1.21517 * 120.00198 * 176.25679 * 3 2 1 5 5 C 1.48154 * 120.00120 * 356.25086 * 3 2 1 6 6 C 1.39895 * 121.12749 * 215.15688 * 5 3 2 7 7 N 1.31767 * 119.78916 * 179.70931 * 6 5 3 8 8 N 1.28270 * 122.41567 * 0.59224 * 7 6 5 9 9 C 1.32280 * 122.43907 * 359.69122 * 8 7 6 10 10 O 1.35705 * 120.07817 * 180.02562 * 9 8 7 11 11 C 1.39234 * 119.83884 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00104 * 179.97438 * 2 1 3 13 13 C 1.53514 * 114.17240 * 59.99762 * 12 2 1 14 14 N 1.47475 * 87.93493 * 220.33032 * 13 12 2 15 15 C 1.46897 * 110.99863 * 138.70422 * 14 13 12 16 16 C 1.50705 * 109.47283 * 170.00229 * 15 14 13 17 17 O 1.21288 * 119.99562 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00102 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99903 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99850 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00109 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00205 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99880 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46928 * 89.99970 * 23 21 19 25 25 H 1.48496 * 109.47063 * 210.00347 * 23 21 19 26 26 H 1.48505 * 109.46970 * 330.00477 * 23 21 19 27 27 C 1.47486 * 87.83455 * 27.01165 * 14 13 12 28 28 H 1.08998 * 109.47393 * 275.32053 * 1 2 3 29 29 H 1.09006 * 109.47179 * 35.32672 * 1 2 3 30 30 H 1.08998 * 109.47290 * 155.32140 * 1 2 3 31 31 H 1.08005 * 120.10109 * 359.97438 * 6 5 3 32 32 H 0.96698 * 114.00254 * 269.97595 * 10 9 8 33 33 H 1.08000 * 121.12214 * 179.97438 * 11 9 8 34 34 H 1.08990 * 113.38412 * 193.08594 * 12 2 1 35 35 H 1.08997 * 113.47088 * 105.55823 * 13 12 2 36 36 H 1.09006 * 113.47441 * 335.10158 * 13 12 2 37 37 H 1.09001 * 109.47577 * 49.99851 * 15 14 13 38 38 H 1.09007 * 109.47327 * 289.99623 * 15 14 13 39 39 H 0.97004 * 119.99914 * 0.02562 * 18 16 15 40 40 H 0.96996 * 120.00211 * 180.02562 * 22 21 19 41 41 H 1.08998 * 113.47785 * 87.75730 * 27 14 13 42 42 H 1.09003 * 113.47625 * 218.21714 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1683 0.0687 5 6 1.4005 2.4488 -0.0839 6 6 1.9261 3.5420 -0.7809 7 7 1.2442 4.6677 -0.8435 8 7 0.1038 4.8134 -0.2746 9 6 -0.4756 3.8427 0.4123 10 8 -1.6839 4.0492 0.9946 11 6 0.1572 2.6087 0.5364 12 6 2.1975 -1.2687 0.0006 13 6 1.9054 -2.1638 -1.2119 14 7 1.9119 -3.3181 -0.2940 15 6 0.8296 -4.2562 -0.6204 16 6 1.0128 -5.5281 0.1671 17 8 1.9522 -5.6415 0.9258 18 7 0.1322 -6.5389 0.0289 19 6 0.2991 -7.6961 0.7449 20 1 1.1360 -7.7975 1.4199 21 6 -0.6085 -8.7386 0.6021 22 7 -0.4488 -9.8476 1.2887 23 14 -2.0565 -8.5629 -0.5649 24 1 -1.6669 -9.0473 -1.9135 25 1 -3.1987 -9.3670 -0.0610 26 1 -2.4549 -7.1347 -0.6479 27 6 1.5044 -2.3943 0.7810 28 1 -0.3634 0.0953 1.0232 29 1 -0.3634 0.8385 -0.5943 30 1 -0.3634 -0.9338 -0.4291 31 1 2.8859 3.4620 -1.2698 32 1 -1.6320 4.3888 1.8985 33 1 -0.2968 1.8020 1.0927 34 1 3.2577 -1.1560 0.2270 35 1 2.7150 -2.1845 -1.9414 36 1 0.9325 -1.9756 -1.6662 37 1 0.8537 -4.4823 -1.6864 38 1 -0.1302 -3.8065 -0.3659 39 1 -0.6194 -6.4480 -0.5777 40 1 -1.0821 -10.5754 1.1888 41 1 0.4245 -2.2678 0.8587 42 1 1.9741 -2.6106 1.7406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323947181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:49 Heat of formation + Delta-G solvation = -8.610419 kcal Electronic energy + Delta-G solvation = -27973.476990 eV Core-core repulsion = 23763.109537 eV Total energy + Delta-G solvation = -4210.367453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68097 -41.83349 -40.44171 -39.60103 -38.61996 -36.56806 -35.95283 -34.45480 -33.74773 -32.57443 -31.46717 -28.48157 -27.76873 -26.98151 -26.46059 -25.74698 -24.73440 -22.16783 -21.26257 -20.50098 -20.31450 -19.90497 -18.95001 -18.34077 -18.00640 -17.80930 -17.63096 -17.10055 -16.73001 -16.71758 -16.39554 -15.90666 -15.61158 -15.17179 -15.12351 -14.84658 -14.82470 -14.50239 -14.09764 -14.02960 -13.78645 -13.66690 -13.30449 -13.13329 -13.08865 -12.83638 -12.53696 -12.40700 -12.09380 -11.96389 -11.94233 -11.73234 -11.49799 -11.39007 -10.93802 -10.58012 -10.47023 -10.23851 -9.87541 -9.80698 -8.40192 -6.01551 -0.88211 -0.40220 1.29945 1.31837 1.37231 1.45750 1.51929 1.97846 2.07390 2.24249 2.41039 2.65990 2.91595 3.09366 3.14985 3.24698 3.28778 3.37448 3.59598 3.66223 3.96165 4.02332 4.05012 4.13397 4.22209 4.24827 4.31619 4.44339 4.45510 4.58513 4.69717 4.76429 4.79340 4.82832 4.91107 5.21008 5.29880 5.54172 5.88068 5.98814 6.05169 6.44537 6.60835 6.74337 6.90006 7.41145 7.41312 8.00043 8.77654 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.002145 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.783123 B =13049.949639 C =13865.545152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.584 5.584 3 C 0.566 3.434 4 O -0.554 6.554 5 C -0.110 4.110 6 C 0.080 3.920 7 N -0.238 5.238 8 N -0.276 5.276 9 C 0.264 3.736 10 O -0.474 6.474 11 C -0.090 4.090 12 C 0.127 3.873 13 C -0.004 4.004 14 N -0.477 5.477 15 C 0.022 3.978 16 C 0.451 3.549 17 O -0.612 6.612 18 N -0.592 5.592 19 C -0.328 4.328 20 H 0.052 0.948 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.259 1.259 25 H -0.277 1.277 26 H -0.225 1.225 27 C -0.004 4.004 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.195 0.805 32 H 0.431 0.569 33 H 0.201 0.799 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.104 0.896 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 28.652 -6.212 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.315 5.315 3 C 0.354 3.646 4 O -0.432 6.432 5 C -0.124 4.124 6 C -0.086 4.086 7 N -0.080 5.080 8 N -0.128 5.128 9 C 0.077 3.923 10 O -0.283 6.283 11 C -0.120 4.120 12 C 0.022 3.978 13 C -0.134 4.134 14 N -0.200 5.200 15 C -0.110 4.110 16 C 0.239 3.761 17 O -0.496 6.496 18 N -0.235 5.235 19 C -0.457 4.457 20 H 0.070 0.930 21 C -0.217 4.217 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.184 1.184 25 H -0.202 1.202 26 H -0.148 1.148 27 C -0.134 4.134 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.212 0.788 32 H 0.294 0.706 33 H 0.218 0.782 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.095 29.257 -6.545 30.594 hybrid contribution -0.924 -1.696 0.743 2.069 sum -7.019 27.561 -5.802 29.027 Atomic orbital electron populations 1.22653 0.76971 1.05642 1.04136 1.47703 1.08374 1.04303 1.71099 1.18135 0.86518 0.83500 0.76495 1.90847 1.14698 1.87248 1.50416 1.21039 0.95636 0.95670 1.00066 1.24745 1.01180 0.88136 0.94512 1.73122 1.00057 1.21221 1.13604 1.72696 1.04205 1.29254 1.06679 1.20819 0.87061 0.89945 0.94475 1.84788 1.20758 1.87115 1.35657 1.23525 0.92005 0.99643 0.96831 1.22542 0.97759 0.80411 0.97059 1.24417 1.04053 0.88394 0.96488 1.68716 1.37682 1.07774 1.05852 1.22484 0.95592 0.91642 1.01242 1.20942 0.83309 0.86230 0.85659 1.90559 1.34024 1.82773 1.42201 1.42030 1.26281 1.14102 1.41065 1.18977 1.11786 0.92490 1.22465 0.93027 1.26170 1.01800 0.94028 0.99666 1.69813 1.38953 1.06224 1.42756 0.85336 0.76955 0.80840 0.78173 1.18361 1.20210 1.14838 1.24435 1.01091 0.90401 0.97449 0.89001 0.89179 0.88536 0.78801 0.70593 0.78236 0.86779 0.88776 0.87684 0.86096 0.87925 0.77405 0.91198 0.87848 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.23 7.63 127.77 0.97 1.20 16 2 N -0.58 -7.56 3.11 -824.66 -2.57 -10.13 16 3 C 0.57 9.45 7.45 86.88 0.65 10.10 16 4 O -0.55 -13.86 16.41 -3.77 -0.06 -13.92 16 5 C -0.11 -1.40 5.35 -19.85 -0.11 -1.50 16 6 C 0.08 1.20 10.94 85.10 0.93 2.13 16 7 N -0.24 -4.42 11.48 -56.51 -0.65 -5.07 16 8 N -0.28 -4.95 11.50 -170.29 -1.96 -6.91 16 9 C 0.26 2.98 7.85 84.86 0.67 3.65 16 10 O -0.47 -3.32 13.57 -90.26 -1.23 -4.54 16 11 C -0.09 -0.72 7.71 22.90 0.18 -0.54 16 12 C 0.13 2.33 4.56 45.45 0.21 2.53 16 13 C 0.00 -0.07 7.23 83.57 0.60 0.53 16 14 N -0.48 -12.74 5.82 -932.52 -5.43 -18.17 16 15 C 0.02 0.58 5.30 85.56 0.45 1.04 16 16 C 0.45 19.50 7.85 87.66 0.69 20.19 16 17 O -0.61 -33.82 16.01 -3.05 -0.05 -33.87 16 18 N -0.59 -26.74 5.09 -306.99 -1.56 -28.31 16 19 C -0.33 -18.88 10.16 84.04 0.85 -18.02 16 20 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16 21 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 22 N -0.94 -55.94 13.96 21.66 0.30 -55.63 16 23 Si 0.97 37.22 27.74 68.60 1.90 39.12 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 25 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 26 H -0.23 -6.97 6.52 99.48 0.65 -6.32 16 27 C 0.00 -0.09 7.11 83.57 0.59 0.50 16 28 H 0.09 0.10 6.84 -2.39 -0.02 0.08 16 29 H 0.09 0.27 5.82 -2.38 -0.01 0.25 16 30 H 0.10 0.30 5.98 -2.39 -0.01 0.28 16 31 H 0.20 2.40 8.05 -2.91 -0.02 2.38 16 32 H 0.43 -1.32 9.06 -74.06 -0.67 -1.99 16 33 H 0.20 0.32 5.13 -2.91 -0.01 0.30 16 34 H 0.11 2.71 7.27 -2.39 -0.02 2.69 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 1.11 6.81 -2.38 -0.02 1.09 16 37 H 0.12 2.55 8.08 -2.39 -0.02 2.53 16 38 H 0.10 1.88 7.30 -2.38 -0.02 1.86 16 39 H 0.39 14.12 5.76 -92.71 -0.53 13.59 16 40 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.10 1.57 5.72 -2.39 -0.01 1.55 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -90.82 353.88 -4.28 -95.10 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.14 Total: 21.06 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 7.16 Total: 21.26 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -11.86 Total: -124.21 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.34 Total: -52.33 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.90 Total: 39.12 kcal Total: -90.82 -4.28 -95.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323947181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.490 kcal (2) G-P(sol) polarization free energy of solvation -90.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds