Wall clock time and date at job start Tue Mar 31 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99521 * 2 1 4 4 O 1.21358 * 119.99517 * 185.65955 * 3 2 1 5 5 C 1.49447 * 120.00359 * 5.66216 * 3 2 1 6 6 O 1.21346 * 120.00161 * 5.74142 * 5 3 2 7 7 N 1.34786 * 120.00081 * 185.74241 * 5 3 2 8 8 C 1.46496 * 120.00009 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.47041 * 179.97438 * 8 7 5 10 10 C 1.38248 * 119.97408 * 269.72464 * 9 8 7 11 11 C 1.38204 * 120.02307 * 179.72360 * 10 9 8 12 12 C 1.38453 * 119.97231 * 0.57126 * 11 10 9 13 13 F 1.35107 * 120.02509 * 179.68231 * 12 11 10 14 14 C 1.38461 * 119.95385 * 359.70395 * 12 11 10 15 15 C 1.38197 * 119.97039 * 0.02562 * 14 12 11 16 16 C 1.46494 * 119.99978 * 179.97438 * 2 1 3 17 17 C 1.53494 * 114.20607 * 60.00409 * 16 2 1 18 18 N 1.47073 * 87.98901 * 220.14696 * 17 16 2 19 19 C 1.36930 * 136.05991 * 207.08908 * 18 17 16 20 20 H 1.08003 * 119.99828 * 354.83102 * 19 18 17 21 21 C 1.38803 * 120.00117 * 174.83073 * 19 18 17 22 22 N 1.31622 * 120.00174 * 184.34495 * 21 19 18 23 23 Si 1.86809 * 119.99978 * 4.34806 * 21 19 18 24 24 H 1.48498 * 109.47159 * 174.37967 * 23 21 19 25 25 H 1.48499 * 109.46971 * 294.37842 * 23 21 19 26 26 H 1.48502 * 109.47070 * 54.37895 * 23 21 19 27 27 C 1.47064 * 87.88000 * 27.34096 * 18 17 16 28 28 H 1.08997 * 109.47550 * 275.69648 * 1 2 3 29 29 H 1.09005 * 109.46879 * 35.69778 * 1 2 3 30 30 H 1.09000 * 109.47147 * 155.69248 * 1 2 3 31 31 H 0.97000 * 119.99479 * 0.02562 * 7 5 3 32 32 H 1.08997 * 109.46996 * 299.99535 * 8 7 5 33 33 H 1.08997 * 109.47358 * 59.99945 * 8 7 5 34 34 H 1.07999 * 119.98862 * 359.97438 * 10 9 8 35 35 H 1.07999 * 120.00671 * 180.25228 * 11 10 9 36 36 H 1.08001 * 120.01505 * 179.97438 * 14 12 11 37 37 H 1.08006 * 119.98450 * 180.02562 * 15 14 12 38 38 H 1.09003 * 113.28067 * 193.06786 * 16 2 1 39 39 H 1.09005 * 113.47112 * 105.36511 * 17 16 2 40 40 H 1.09006 * 113.52128 * 334.93174 * 17 16 2 41 41 H 0.97003 * 120.00056 * 5.00671 * 22 21 19 42 42 H 1.09005 * 113.46732 * 87.44200 * 27 18 17 43 43 H 1.09001 * 113.46658 * 217.87782 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3479 1.1698 -0.1037 5 6 1.3970 2.4583 0.1277 6 8 0.2015 2.4532 0.3357 7 7 2.0559 3.6284 0.0117 8 6 1.3288 4.8940 0.1375 9 6 2.2887 6.0435 -0.0303 10 6 2.9296 6.5749 1.0734 11 6 3.8145 7.6254 0.9199 12 6 4.0499 8.1534 -0.3381 13 9 4.9098 9.1845 -0.4885 14 6 3.4030 7.6241 -1.4421 15 6 2.5229 6.5700 -1.2869 16 6 2.1975 -1.2687 0.0006 17 6 1.9060 -2.1642 -1.2115 18 7 1.9169 -3.3164 -0.2975 19 6 2.1884 -4.6545 -0.4009 20 1 2.3964 -5.0902 -1.3670 21 6 2.1964 -5.4510 0.7358 22 7 2.5409 -6.7183 0.6490 23 14 1.7183 -4.7241 2.3890 24 1 1.6759 -5.8017 3.4099 25 1 2.7193 -3.7026 2.7887 26 1 0.3796 -4.0903 2.2824 27 6 1.5015 -2.4000 0.7751 28 1 -0.3634 0.1020 1.0225 29 1 -0.3633 0.8346 -0.5997 30 1 -0.3633 -0.9366 -0.4230 31 1 3.0114 3.6324 -0.1549 32 1 0.5584 4.9483 -0.6316 33 1 0.8641 4.9499 1.1219 34 1 2.7419 6.1663 2.0553 35 1 4.3181 8.0376 1.7818 36 1 3.5856 8.0355 -2.4239 37 1 2.0186 6.1567 -2.1480 38 1 3.2576 -1.1540 0.2269 39 1 2.7146 -2.1823 -1.9424 40 1 0.9322 -1.9791 -1.6650 41 1 2.8586 -7.0780 -0.1940 42 1 0.4208 -2.2763 0.8461 43 1 1.9653 -2.6188 1.7369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323993504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:07 Heat of formation + Delta-G solvation = -3.430066 kcal Electronic energy + Delta-G solvation = -27665.766570 eV Core-core repulsion = 23435.703792 eV Total energy + Delta-G solvation = -4230.062778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.39196 -40.96840 -39.85576 -39.04924 -37.89243 -35.73625 -34.42894 -32.28520 -31.72272 -31.58074 -28.29553 -27.26403 -26.69390 -25.46421 -24.51480 -23.64186 -22.27717 -21.74193 -20.35113 -19.19665 -18.27512 -17.94335 -17.58701 -17.17184 -17.00958 -16.27128 -16.13034 -16.06344 -15.98413 -15.44535 -15.02014 -14.78393 -14.49465 -14.14118 -14.02966 -13.96456 -13.63859 -13.21196 -12.92138 -12.88715 -12.82044 -12.36803 -12.23346 -12.17187 -12.02968 -11.65229 -11.57733 -11.41949 -11.30023 -10.62129 -10.43426 -9.69903 -9.64855 -9.54327 -9.40754 -9.20987 -9.15420 -8.97220 -8.44860 -7.23450 -6.36473 -3.30653 0.44225 0.65931 1.35407 2.24114 2.98734 3.12352 3.36532 3.40267 3.49006 3.61667 3.70601 4.02696 4.13024 4.26366 4.34485 4.54447 4.62172 4.67471 4.73204 4.99053 5.05528 5.12605 5.30948 5.33682 5.34323 5.40500 5.55573 5.60307 5.62789 5.66470 5.73580 5.82068 5.89764 6.03148 6.09150 6.17370 6.28544 6.29164 6.33012 6.68470 6.91873 6.99122 7.27487 7.58954 7.94186 8.17706 8.91041 9.42383 10.25490 11.14887 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.002002 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.852897 B =13985.109191 C =14114.243778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.567 5.567 3 C 0.502 3.498 4 O -0.525 6.525 5 C 0.510 3.490 6 O -0.512 6.512 7 N -0.702 5.702 8 C 0.162 3.838 9 C -0.122 4.122 10 C -0.068 4.068 11 C -0.155 4.155 12 C 0.107 3.893 13 F -0.138 7.138 14 C -0.156 4.156 15 C -0.068 4.068 16 C 0.097 3.903 17 C 0.114 3.886 18 N -0.619 5.619 19 C -0.303 4.303 20 H 0.085 0.915 21 C -0.022 4.022 22 N -0.931 5.931 23 Si 1.071 2.929 24 H -0.293 1.293 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.084 3.916 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.414 0.586 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.262 0.738 42 H 0.051 0.949 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 31.865 -1.566 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.299 5.299 3 C 0.284 3.716 4 O -0.402 6.402 5 C 0.291 3.709 6 O -0.388 6.388 7 N -0.357 5.357 8 C 0.039 3.961 9 C -0.123 4.123 10 C -0.086 4.086 11 C -0.174 4.174 12 C 0.088 3.912 13 F -0.117 7.117 14 C -0.174 4.174 15 C -0.087 4.087 16 C -0.007 4.007 17 C -0.014 4.014 18 N -0.348 5.348 19 C -0.429 4.429 20 H 0.103 0.897 21 C -0.221 4.221 22 N -0.572 5.572 23 Si 0.904 3.096 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.216 1.216 27 C -0.043 4.043 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.251 0.749 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.545 31.193 0.086 31.297 hybrid contribution 0.730 0.636 -1.791 2.036 sum -1.815 31.829 -1.705 31.926 Atomic orbital electron populations 1.22171 0.77885 1.03534 1.03188 1.47840 1.08197 1.05131 1.68766 1.20021 0.87505 0.84937 0.79131 1.90761 1.13567 1.87032 1.48808 1.20308 0.87386 0.85287 0.77936 1.90743 1.14275 1.87279 1.46480 1.45857 1.13451 1.04410 1.71965 1.20257 0.92703 0.79442 1.03679 1.19908 1.00147 0.98532 0.93718 1.21022 0.94065 0.94419 0.99127 1.21197 1.01082 0.98778 0.96360 1.17825 0.91413 0.87320 0.94674 1.91525 1.67642 1.55992 1.96528 1.21194 0.98946 0.98731 0.98569 1.21012 0.96074 0.94439 0.97147 1.23796 0.97839 0.79134 0.99934 1.22743 0.99013 0.85967 0.93667 1.45789 1.79185 1.03939 1.05838 1.20137 1.46330 0.80160 0.96314 0.89700 1.25728 0.99707 0.95009 1.01695 1.70919 1.45380 1.12346 1.28590 0.83705 0.76113 0.73693 0.76067 1.22065 1.21890 1.21554 1.23288 0.97912 0.88036 0.95024 0.91766 0.89425 0.90656 0.74935 0.89771 0.89777 0.84503 0.84358 0.84369 0.84523 0.85435 0.92904 0.94014 0.92805 0.93172 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.02 59.85 0.48 1.46 16 2 N -0.57 -8.68 3.11 -174.06 -0.54 -9.22 16 3 C 0.50 7.33 7.73 -11.59 -0.09 7.24 16 4 O -0.52 -8.71 16.03 5.49 0.09 -8.62 16 5 C 0.51 6.08 7.70 -11.58 -0.09 5.99 16 6 O -0.51 -6.67 13.39 5.50 0.07 -6.60 16 7 N -0.70 -6.22 5.54 -61.91 -0.34 -6.56 16 8 C 0.16 1.06 5.80 -5.20 -0.03 1.03 16 9 C -0.12 -0.71 5.25 -104.62 -0.55 -1.26 16 10 C -0.07 -0.38 9.70 -39.59 -0.38 -0.76 16 11 C -0.16 -0.94 10.03 -39.51 -0.40 -1.34 16 12 C 0.11 0.76 7.30 -39.42 -0.29 0.47 16 13 F -0.14 -1.14 17.27 2.25 0.04 -1.10 16 14 C -0.16 -0.93 10.03 -39.51 -0.40 -1.33 16 15 C -0.07 -0.37 9.70 -39.59 -0.38 -0.76 16 16 C 0.10 1.76 4.55 -67.68 -0.31 1.45 16 17 C 0.11 2.24 8.22 -8.51 -0.07 2.17 16 18 N -0.62 -15.13 3.69 -184.62 -0.68 -15.81 16 19 C -0.30 -8.69 11.09 -15.07 -0.17 -8.86 16 20 H 0.09 2.55 8.05 -52.48 -0.42 2.13 16 21 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 22 N -0.93 -29.19 13.70 55.49 0.76 -28.43 16 23 Si 1.07 26.65 25.11 -169.99 -4.27 22.38 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -6.83 6.30 56.52 0.36 -6.47 16 26 H -0.29 -6.67 6.70 56.52 0.38 -6.30 16 27 C 0.08 1.75 5.33 -8.38 -0.04 1.70 16 28 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.09 1.07 6.00 -51.93 -0.31 0.76 16 30 H 0.07 1.00 5.96 -51.93 -0.31 0.69 16 31 H 0.41 3.53 7.95 -40.82 -0.32 3.20 16 32 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.13 2.45 7.34 -51.93 -0.38 2.07 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.77 7.05 -51.93 -0.37 0.40 16 41 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 42 H 0.05 0.99 6.37 -51.93 -0.33 0.66 16 43 H 0.06 1.35 4.01 -51.93 -0.21 1.14 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -33.65 360.01 -7.51 -41.16 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.25 Total: 0.94 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -2.81 Total: 6.45 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.81 Total: -60.03 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.16 Total: -15.22 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -4.27 Total: 22.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.65 -7.51 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323993504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.732 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds